Wall clock time and date at job start Sun Mar 29 2020 22:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.50693 * 113.66784 * 139.92946 * 4 3 2 6 6 O 1.21287 * 120.00272 * 262.44715 * 5 4 3 7 7 N 1.34780 * 120.00156 * 82.44154 * 5 4 3 8 8 C 1.46497 * 119.99960 * 180.02562 * 7 5 4 9 9 C 1.53949 * 113.74041 * 253.74079 * 8 7 5 10 10 N 1.47818 * 86.03590 * 222.08940 * 9 8 7 11 11 C 1.36936 * 134.45301 * 204.64793 * 10 9 8 12 12 H 1.08004 * 119.99894 * 179.86406 * 11 10 9 13 13 C 1.38812 * 120.00203 * 359.86382 * 11 10 9 14 14 N 1.31620 * 120.00061 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99927 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47364 * 59.99781 * 15 13 11 17 17 H 1.48508 * 109.47206 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47129 * 299.99420 * 15 13 11 19 19 C 1.47574 * 91.05026 * 24.54971 * 10 9 8 20 20 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 21 21 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 22 22 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 23 23 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 24 24 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 25 25 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 26 26 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 27 27 H 1.09000 * 113.53827 * 270.81220 * 4 3 2 28 28 H 0.96998 * 119.99390 * 0.02562 * 7 5 4 29 29 H 1.08992 * 112.94827 * 25.33112 * 8 7 5 30 30 H 1.08999 * 113.76850 * 336.35019 * 9 8 7 31 31 H 1.09001 * 113.76773 * 107.74893 * 9 8 7 32 32 H 0.97003 * 120.00307 * 180.02562 * 14 13 11 33 33 H 1.09009 * 113.76764 * 221.15258 * 19 10 9 34 34 H 1.09003 * 113.76954 * 89.75918 * 19 10 9 35 35 H 1.09006 * 113.61506 * 254.52982 * 20 2 1 36 36 H 1.08996 * 113.61642 * 25.43366 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 3.5408 1.8288 -2.0933 6 8 3.0072 1.7276 -3.1778 7 7 4.4454 2.8040 -1.8758 8 6 4.7837 3.7420 -2.9490 9 6 6.1694 3.4963 -3.5730 10 7 6.3267 4.9659 -3.5502 11 6 7.0733 5.8618 -4.2680 12 1 7.0051 6.9176 -4.0513 13 6 7.9176 5.4128 -5.2742 14 7 8.0003 4.1261 -5.5386 15 14 8.9365 6.6349 -6.2529 16 1 9.8364 7.3772 -5.3340 17 1 9.7486 5.9071 -7.2610 18 1 8.0342 7.5918 -6.9423 19 6 5.3548 5.0800 -2.4456 20 6 2.1460 -0.1865 -1.3966 21 1 -0.3633 -0.9603 -0.3660 22 1 -0.3633 0.7971 -0.6487 23 1 -0.3634 0.1632 1.0147 24 1 1.9533 -0.6616 0.7559 25 1 1.4945 2.1704 -0.4289 26 1 2.5650 1.7024 0.9626 27 1 4.0711 0.4399 -0.5035 28 1 4.8723 2.8847 -1.0086 29 1 3.9856 3.8538 -3.6829 30 1 6.8607 2.9703 -2.9145 31 1 6.1305 3.0729 -4.5766 32 1 8.5907 3.8124 -6.2415 33 1 4.6665 5.9188 -2.5508 34 1 5.8062 5.0202 -1.4552 35 1 2.5651 -1.1795 -1.5599 36 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030204151.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:38 Heat of formation + Delta-G solvation = 5.998543 kcal Electronic energy + Delta-G solvation = -16782.304701 eV Core-core repulsion = 14074.655037 eV Total energy + Delta-G solvation = -2707.649663 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38497 -39.81468 -38.34018 -35.11724 -33.74329 -30.98093 -29.40698 -26.64390 -26.54895 -26.04534 -24.22911 -21.40589 -21.24124 -20.16281 -18.79974 -18.04780 -17.29819 -16.98024 -16.49830 -15.77300 -15.64568 -15.37969 -14.63462 -14.28624 -13.85357 -13.71904 -13.37109 -13.30857 -13.22542 -13.04443 -12.82745 -12.65176 -12.34579 -12.13162 -11.96143 -11.71885 -11.54072 -11.38429 -11.06068 -10.89695 -10.59050 -9.93452 -8.99533 -7.93427 -5.29357 1.44463 1.49015 1.55140 1.67447 2.23185 2.50735 3.24096 3.37947 3.56382 3.67772 3.79813 3.86635 3.89414 4.19474 4.38884 4.50967 4.56358 4.69899 4.72500 4.86152 4.88376 4.91081 4.95969 4.98893 5.16774 5.17651 5.22521 5.27229 5.43065 5.45434 5.64958 5.72711 5.87436 6.67755 6.85930 7.36385 7.56291 8.49421 9.23208 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.072778 B = 0.004322 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.637045 B = 6477.226866 C = 6647.484947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.135 4.135 5 C 0.514 3.486 6 O -0.594 6.594 7 N -0.702 5.702 8 C 0.118 3.882 9 C 0.152 3.848 10 N -0.640 5.640 11 C -0.239 4.239 12 H 0.091 0.909 13 C -0.070 4.070 14 N -0.956 5.956 15 Si 0.985 3.015 16 H -0.272 1.272 17 H -0.295 1.295 18 H -0.275 1.275 19 C 0.123 3.877 20 C -0.124 4.124 21 H 0.059 0.941 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.139 0.861 28 H 0.416 0.584 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.030 0.970 32 H 0.249 0.751 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.519 -7.072 15.802 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.149 4.149 4 C -0.156 4.156 5 C 0.303 3.697 6 O -0.475 6.475 7 N -0.353 5.353 8 C 0.011 3.989 9 C 0.025 3.975 10 N -0.367 5.367 11 C -0.367 4.367 12 H 0.109 0.891 13 C -0.262 4.262 14 N -0.605 5.605 15 Si 0.812 3.188 16 H -0.198 1.198 17 H -0.222 1.222 18 H -0.201 1.201 19 C -0.002 4.002 20 C -0.162 4.162 21 H 0.078 0.922 22 H 0.062 0.938 23 H 0.088 0.912 24 H 0.132 0.868 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.156 0.844 28 H 0.253 0.747 29 H 0.104 0.896 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.679 -7.015 14.811 20.124 hybrid contribution 1.132 0.531 -0.812 1.491 sum -10.547 -6.483 14.000 18.689 Atomic orbital electron populations 1.21725 0.94405 1.01700 1.02210 1.22470 0.96093 0.96905 0.96595 1.22975 0.95882 0.97315 0.98772 1.22930 1.00671 0.96517 0.95514 1.21363 0.77565 0.81438 0.89355 1.90666 1.54582 1.73890 1.28337 1.45932 1.42715 1.30806 1.15853 1.23109 0.95842 0.89675 0.90238 1.22594 0.91807 0.85579 0.97526 1.46055 1.49750 1.03283 1.37602 1.19427 1.17071 0.89198 1.11029 0.89125 1.25749 1.01670 0.98033 1.00795 1.70044 1.42036 1.14134 1.34237 0.85060 0.78218 0.77564 0.77916 1.19813 1.22172 1.20081 1.23006 0.90066 0.94981 0.92151 1.22934 0.96928 0.98214 0.98128 0.92170 0.93800 0.91193 0.86790 0.91083 0.88100 0.84350 0.74724 0.89587 0.95538 0.95149 0.94255 0.91854 0.91445 0.90509 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.70 71.98 0.70 -1.27 16 2 C -0.10 -1.46 4.35 -10.27 -0.04 -1.50 16 3 C -0.11 -1.75 7.20 31.18 0.22 -1.52 16 4 C -0.14 -2.76 4.15 -10.95 -0.05 -2.81 16 5 C 0.51 16.13 7.36 87.65 0.65 16.77 16 6 O -0.59 -24.87 15.52 -3.05 -0.05 -24.91 16 7 N -0.70 -21.13 5.37 -447.38 -2.40 -23.53 16 8 C 0.12 4.72 4.40 46.75 0.21 4.92 16 9 C 0.15 7.64 7.33 86.44 0.63 8.27 16 10 N -0.64 -33.58 3.70 -716.61 -2.65 -36.24 16 11 C -0.24 -13.67 10.70 84.03 0.90 -12.77 16 12 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 13 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 14 N -0.96 -59.88 11.39 21.65 0.25 -59.64 16 15 Si 0.99 46.45 29.55 68.60 2.03 48.48 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 19 C 0.12 4.80 8.69 86.49 0.75 5.55 16 20 C -0.12 -2.56 6.97 31.12 0.22 -2.35 16 21 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.04 0.72 7.98 -2.39 -0.02 0.70 16 23 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.07 1.35 7.94 -2.39 -0.02 1.33 16 26 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.42 9.32 8.71 -92.71 -0.81 8.51 16 29 H 0.09 3.88 7.51 -2.39 -0.02 3.86 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.79 7.16 -2.39 -0.02 1.77 16 32 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.07 2.25 8.11 -2.39 -0.02 2.24 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.79 7.39 -2.39 -0.02 1.77 16 Total: -1.00 -74.66 299.28 2.07 -72.58 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.25 Total: 13.55 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 4.65 Total: 9.70 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -4.81 Total: -119.41 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -74.66 2.07 -72.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030204151.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.583 kcal (2) G-P(sol) polarization free energy of solvation -74.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds