Wall clock time and date at job start Sun Mar 29 2020 22:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 115.55094 * 2 1 4 4 C 1.52998 * 117.49473 * 214.32661 * 2 1 3 5 5 C 1.52999 * 117.49564 * 145.66900 * 2 1 3 6 6 H 1.09006 * 117.49693 * 214.97957 * 5 2 1 7 7 C 1.50698 * 117.50158 * 359.97438 * 5 2 1 8 8 O 1.21282 * 119.99663 * 359.97438 * 7 5 2 9 9 N 1.34773 * 120.00070 * 180.02562 * 7 5 2 10 10 C 1.46507 * 119.99740 * 180.02562 * 9 7 5 11 11 C 1.53952 * 113.73577 * 253.73646 * 10 9 7 12 12 N 1.47822 * 86.03154 * 222.08610 * 11 10 9 13 13 C 1.36936 * 134.45160 * 204.64247 * 12 11 10 14 14 H 1.08001 * 119.99664 * 179.86514 * 13 12 11 15 15 C 1.38818 * 120.00463 * 359.87043 * 13 12 11 16 16 N 1.31624 * 119.99444 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00301 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46758 * 89.99652 * 17 15 13 19 19 H 1.48491 * 109.47315 * 209.99788 * 17 15 13 20 20 H 1.48504 * 109.47205 * 330.00037 * 17 15 13 21 21 C 1.47575 * 91.05443 * 24.54871 * 12 11 10 22 22 H 1.09001 * 109.47002 * 34.41649 * 1 2 3 23 23 H 1.08993 * 109.46955 * 154.42086 * 1 2 3 24 24 H 1.09000 * 109.47050 * 274.41915 * 1 2 3 25 25 H 1.08997 * 109.46759 * 85.58170 * 3 2 1 26 26 H 1.08993 * 109.46954 * 205.58320 * 3 2 1 27 27 H 1.08995 * 109.47058 * 325.58161 * 3 2 1 28 28 H 1.08992 * 117.50074 * 0.02562 * 4 2 1 29 29 H 1.09001 * 117.49625 * 145.02619 * 4 2 1 30 30 H 0.96995 * 120.00281 * 359.97438 * 9 7 5 31 31 H 1.08997 * 112.94864 * 25.32054 * 10 9 7 32 32 H 1.08999 * 113.76746 * 336.34269 * 11 10 9 33 33 H 1.08998 * 113.77337 * 107.74967 * 11 10 9 34 34 H 0.97002 * 119.99446 * 179.97438 * 16 15 13 35 35 H 1.08999 * 113.77478 * 221.15292 * 21 12 11 36 36 H 1.09004 * 113.77057 * 89.75594 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2364 -1.1208 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 3.1715 -0.8747 1.2687 7 6 1.3720 -2.1398 1.4621 8 8 0.1638 -2.0519 1.4032 9 7 1.9415 -3.1482 2.1514 10 6 1.1010 -4.1391 2.8282 11 6 1.0683 -3.9818 4.3593 12 7 1.1722 -5.4555 4.4101 13 6 0.8184 -6.4109 5.3251 14 1 1.0061 -7.4539 5.1168 15 6 0.2186 -6.0389 6.5205 16 7 -0.0097 -4.7677 6.7745 17 14 -0.2646 -7.3421 7.7684 18 1 0.8683 -7.5809 8.6985 19 1 -1.4468 -6.8772 8.5372 20 1 -0.5991 -8.6045 7.0614 21 6 1.8076 -5.4839 3.0784 22 1 -0.3633 0.8478 -0.5808 23 1 -0.3633 -0.9269 -0.4437 24 1 -0.3633 0.0792 1.0246 25 1 2.2752 1.7423 1.0246 26 1 3.1829 1.3084 -0.4437 27 1 1.5819 2.0738 -0.5808 28 1 1.6112 -1.8578 -1.2691 29 1 3.1715 -0.8749 -1.2685 30 1 2.9078 -3.2183 2.1989 31 1 0.1143 -4.2392 2.3762 32 1 1.9378 -3.4660 4.7666 33 1 0.1242 -3.5934 4.7410 34 1 -0.4292 -4.5078 7.6096 35 1 1.4525 -6.2922 2.4392 36 1 2.8947 -5.4100 3.1086 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030226930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:00 Heat of formation + Delta-G solvation = 38.527055 kcal Electronic energy + Delta-G solvation = -16880.489025 eV Core-core repulsion = 14174.249904 eV Total energy + Delta-G solvation = -2706.239121 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04219 -38.14956 -36.59288 -33.46018 -31.80688 -29.49463 -27.47860 -27.41581 -24.82124 -24.49661 -22.49253 -20.25724 -19.70142 -18.76305 -16.89516 -16.75791 -15.61797 -15.06419 -14.74647 -14.18314 -14.04929 -13.83775 -13.60688 -13.10581 -12.64609 -12.49666 -12.10583 -11.88109 -11.73587 -11.44289 -11.43377 -11.21778 -10.88621 -10.77118 -10.43592 -10.18951 -10.03003 -9.83837 -9.54404 -9.15751 -8.80786 -8.38194 -6.91899 -5.77273 -3.11340 2.78163 3.38685 3.42741 3.46574 3.49817 3.79849 4.45249 4.61602 4.69855 4.80808 5.04699 5.11280 5.27487 5.48406 5.51105 5.57819 5.60014 5.61896 5.86009 5.87939 5.98750 6.03851 6.05524 6.20852 6.23315 6.42607 6.55740 6.60618 6.82790 7.24356 7.38410 7.56710 7.94640 7.97367 8.64130 9.02758 9.69104 10.55966 11.39518 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.056143 B = 0.004615 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.610491 B = 6065.879297 C = 6264.165198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.096 4.096 3 C -0.116 4.116 4 C -0.149 4.149 5 C -0.187 4.187 6 H 0.119 0.881 7 C 0.539 3.461 8 O -0.538 6.538 9 N -0.713 5.713 10 C 0.092 3.908 11 C 0.154 3.846 12 N -0.607 5.607 13 C -0.226 4.226 14 H 0.082 0.918 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.914 3.086 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.112 3.888 22 H 0.045 0.955 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.396 0.604 31 H 0.109 0.891 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.255 0.745 35 H 0.049 0.951 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 9.171 -13.979 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.097 4.097 3 C -0.173 4.173 4 C -0.187 4.187 5 C -0.208 4.208 6 H 0.137 0.863 7 C 0.324 3.676 8 O -0.416 6.416 9 N -0.363 5.363 10 C -0.012 4.012 11 C 0.028 3.972 12 N -0.334 5.334 13 C -0.354 4.354 14 H 0.099 0.901 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.015 4.015 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.229 0.771 31 H 0.127 0.873 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.501 9.086 -13.692 17.329 hybrid contribution 0.547 -0.784 0.977 1.367 sum 6.048 8.302 -12.715 16.346 Atomic orbital electron populations 1.21351 0.90641 1.01186 1.02794 1.21561 0.96059 0.90430 1.01609 1.21390 0.99749 0.93966 1.02182 1.23196 1.02625 1.01690 0.91180 1.22426 1.01954 1.00948 0.95459 0.86257 1.19612 0.88159 0.81385 0.78398 1.90692 1.14536 1.74567 1.61791 1.46114 1.10184 1.27571 1.52420 1.23868 0.95235 0.87420 0.94717 1.22709 1.00495 0.85473 0.88526 1.45729 1.68499 1.02772 1.16415 1.18995 1.33390 0.87278 0.95727 0.90055 1.24822 1.01182 0.96404 0.97894 1.69838 1.47511 1.14163 1.25026 0.86088 0.77813 0.80421 0.81239 1.21570 1.21544 1.20523 1.22866 0.95627 0.94402 0.88555 0.93608 0.91659 0.91195 0.91963 0.92459 0.91795 0.88359 0.88164 0.77071 0.87279 0.95431 0.90554 0.93526 0.93307 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 8.09 37.16 0.30 -1.02 16 2 C -0.10 -1.07 2.70 -154.50 -0.42 -1.49 16 3 C -0.12 -1.01 9.85 37.16 0.37 -0.64 16 4 C -0.15 -1.51 9.53 -26.69 -0.25 -1.77 16 5 C -0.19 -2.22 5.91 -91.74 -0.54 -2.77 16 6 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 7 C 0.54 8.64 7.60 -10.99 -0.08 8.55 16 8 O -0.54 -10.52 12.73 5.56 0.07 -10.45 16 9 N -0.71 -11.29 5.37 -55.33 -0.30 -11.59 16 10 C 0.09 1.84 4.40 -70.13 -0.31 1.53 16 11 C 0.15 3.77 7.33 -2.83 -0.02 3.75 16 12 N -0.61 -15.87 3.70 -177.87 -0.66 -16.52 16 13 C -0.23 -6.45 10.70 -15.06 -0.16 -6.61 16 14 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 16 N -0.92 -27.86 11.39 55.49 0.63 -27.23 16 17 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 C 0.11 2.29 8.69 -2.97 -0.03 2.26 16 22 H 0.04 0.49 7.93 -51.93 -0.41 0.08 16 23 H 0.06 0.93 7.01 -51.93 -0.36 0.57 16 24 H 0.07 1.05 7.26 -51.93 -0.38 0.67 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 27 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 28 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 29 H 0.10 0.78 8.05 -51.93 -0.42 0.37 16 30 H 0.40 5.11 8.71 -40.82 -0.36 4.76 16 31 H 0.11 2.36 7.51 -51.93 -0.39 1.97 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 2.12 7.17 -51.93 -0.37 1.75 16 34 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -32.64 298.68 -7.60 -40.24 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.59 Total: 2.19 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.24 Total: 1.52 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.32 Total: -55.34 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.64 -7.60 -40.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030226930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.768 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds