Wall clock time and date at job start Sun Mar 29 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46823 * 2 1 4 4 H 1.09001 * 115.55205 * 29.32996 * 3 2 1 5 5 C 1.52994 * 117.52013 * 243.62686 * 3 2 1 6 6 C 1.52995 * 60.00054 * 252.51909 * 5 3 2 7 7 H 1.09003 * 117.51365 * 107.48060 * 6 5 3 8 8 C 1.50698 * 117.49988 * 252.50513 * 6 5 3 9 9 O 1.21286 * 119.99934 * 68.62686 * 8 6 5 10 10 N 1.34779 * 120.00148 * 248.62229 * 8 6 5 11 11 C 1.46499 * 119.99696 * 180.02562 * 10 8 6 12 12 C 1.53504 * 114.20382 * 205.00090 * 11 10 8 13 13 N 1.47066 * 88.04678 * 220.37387 * 12 11 10 14 14 C 1.36941 * 136.05541 * 207.05070 * 13 12 11 15 15 H 1.07998 * 119.99878 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99593 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00459 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99771 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46679 * 89.99981 * 18 16 14 20 20 H 1.48491 * 109.47288 * 209.99798 * 18 16 14 21 21 H 1.48502 * 109.47105 * 330.00301 * 18 16 14 22 22 C 1.47064 * 87.88659 * 27.09306 * 13 12 11 23 23 H 1.09001 * 109.47441 * 60.00378 * 1 2 3 24 24 H 1.09006 * 109.46867 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47419 * 299.99763 * 1 2 3 26 26 H 1.09000 * 109.46919 * 240.00209 * 2 1 3 27 27 H 1.08996 * 109.47093 * 119.99928 * 2 1 3 28 28 H 1.08999 * 117.49926 * 145.02944 * 5 3 2 29 29 H 1.09005 * 117.49936 * 0.02562 * 5 3 2 30 30 H 0.96992 * 119.99913 * 0.02562 * 10 8 6 31 31 H 1.09002 * 113.41645 * 338.19910 * 11 10 8 32 32 H 1.09002 * 113.46865 * 105.56483 * 12 11 10 33 33 H 1.08999 * 113.46581 * 335.18259 * 12 11 10 34 34 H 0.97000 * 120.00117 * 180.02562 * 17 16 14 35 35 H 1.08999 * 113.47096 * 87.65665 * 22 13 12 36 36 H 1.09005 * 113.46966 * 218.04058 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8438 1.9081 -1.2156 6 6 3.5500 1.6580 0.1184 7 1 4.1802 0.7720 0.1961 8 6 4.0227 2.8618 0.8919 9 8 3.2156 3.6162 1.3924 10 7 5.3423 3.1000 1.0277 11 6 5.8017 4.2700 1.7803 12 6 7.1969 4.7686 1.3785 13 7 7.4712 4.9962 2.8053 14 6 8.2764 5.8308 3.5336 15 1 8.9127 6.5430 3.0294 16 6 8.2746 5.7614 4.9200 17 7 7.4994 4.8932 5.5345 18 14 9.3724 6.9004 5.9136 19 1 8.6358 8.1521 6.2230 20 1 9.7638 6.2305 7.1797 21 1 10.5902 7.2240 5.1277 22 6 6.5011 3.9325 3.1057 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7210 2.9434 -1.5337 29 1 3.0092 1.1868 -2.0160 30 1 5.9877 2.4968 0.6273 31 1 5.0514 5.0567 1.8585 32 1 7.1771 5.6850 0.7886 33 1 7.8230 3.9949 0.9342 34 1 7.4979 4.8450 6.5033 35 1 6.9412 2.9354 3.1216 36 1 5.8904 4.1375 3.9850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030980260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:51 Heat of formation + Delta-G solvation = 34.629024 kcal Electronic energy + Delta-G solvation = -16519.352059 eV Core-core repulsion = 13812.943906 eV Total energy + Delta-G solvation = -2706.408152 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86945 -38.16558 -36.66626 -33.48139 -32.20891 -31.75812 -27.64860 -24.91155 -24.61167 -23.88453 -22.54506 -20.63396 -19.95728 -19.43699 -17.03972 -16.75388 -15.84689 -15.07235 -14.82639 -14.78173 -14.14527 -14.09499 -13.82659 -12.79822 -12.55320 -12.52326 -12.25965 -11.98199 -11.50984 -11.48184 -11.39711 -11.16347 -10.92317 -10.81858 -10.43198 -10.31692 -10.11100 -10.05464 -9.49542 -9.42324 -8.83707 -8.35687 -6.93600 -5.78709 -3.13122 2.74733 3.38009 3.41222 3.45420 3.47158 3.82477 4.43440 4.58002 4.69949 4.77796 5.03577 5.13436 5.18876 5.27848 5.32580 5.46880 5.52963 5.57287 5.65658 5.77332 5.85766 5.94917 5.98417 6.02826 6.23644 6.27715 6.39770 6.54803 6.77709 7.20559 7.35689 7.54586 7.91921 7.95111 8.59756 9.00565 9.67137 10.58563 11.38406 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.058516 B = 0.004155 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.384103 B = 6736.540929 C = 6999.567741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.120 4.120 4 H 0.118 0.882 5 C -0.151 4.151 6 C -0.188 4.188 7 H 0.121 0.879 8 C 0.539 3.461 9 O -0.545 6.545 10 N -0.709 5.709 11 C 0.086 3.914 12 C 0.111 3.889 13 N -0.604 5.604 14 C -0.221 4.221 15 H 0.084 0.916 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.916 3.084 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.145 3.855 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.397 0.603 31 H 0.115 0.885 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.026 0.974 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.976 -9.896 -13.340 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.139 4.139 4 H 0.136 0.864 5 C -0.188 4.188 6 C -0.210 4.210 7 H 0.139 0.861 8 C 0.325 3.675 9 O -0.422 6.422 10 N -0.358 5.358 11 C -0.019 4.019 12 C -0.016 4.016 13 N -0.330 5.330 14 C -0.348 4.348 15 H 0.101 0.899 16 C -0.204 4.204 17 N -0.563 5.563 18 Si 0.746 3.254 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.018 3.982 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.231 0.769 31 H 0.133 0.867 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.375 -9.178 -12.642 18.220 hybrid contribution 1.186 0.131 0.448 1.275 sum -8.189 -9.048 -12.194 17.252 Atomic orbital electron populations 1.21741 0.95295 1.01479 1.02171 1.21150 0.96188 0.93803 1.02064 1.22458 0.91770 0.98547 1.01093 0.86430 1.23073 1.02407 1.03001 0.90317 1.22345 0.97531 0.99289 1.01814 0.86087 1.19613 0.82678 0.85400 0.79790 1.90686 1.53990 1.48746 1.48822 1.45934 1.06483 1.28503 1.54877 1.23643 0.95685 0.87940 0.94657 1.22709 0.91877 0.97649 0.89361 1.45254 1.48650 1.39156 0.99974 1.18904 1.16706 1.11223 0.88005 0.89865 1.24847 0.99995 0.99280 0.96229 1.69844 1.41117 1.37258 1.08126 0.86063 0.79828 0.79890 0.79615 1.21363 1.21568 1.20599 1.22539 0.89571 0.91182 0.94923 0.92606 0.92756 0.92415 0.91797 0.91374 0.88368 0.88054 0.76916 0.86707 0.93687 0.94848 0.93504 0.95594 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.87 37.16 0.37 -0.80 16 2 C -0.09 -0.81 6.22 -26.73 -0.17 -0.98 16 3 C -0.12 -1.31 5.25 -90.63 -0.48 -1.78 16 4 H 0.12 1.52 7.60 -51.93 -0.39 1.13 16 5 C -0.15 -1.47 9.88 -26.74 -0.26 -1.74 16 6 C -0.19 -2.20 5.91 -91.78 -0.54 -2.75 16 7 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 8 C 0.54 8.77 7.61 -10.99 -0.08 8.69 16 9 O -0.54 -11.16 15.85 5.55 0.09 -11.08 16 10 N -0.71 -11.26 5.39 -53.51 -0.29 -11.55 16 11 C 0.09 1.73 4.61 -67.70 -0.31 1.41 16 12 C 0.11 2.29 8.45 -8.50 -0.07 2.22 16 13 N -0.60 -15.87 3.78 -184.57 -0.70 -16.57 16 14 C -0.22 -6.31 10.75 -15.06 -0.16 -6.47 16 15 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 17 N -0.92 -27.83 11.51 55.49 0.64 -27.20 16 18 Si 0.92 22.34 29.55 -169.99 -5.02 17.31 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.14 3.54 7.22 -8.44 -0.06 3.48 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.46 7.88 -51.93 -0.41 0.06 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 30 H 0.40 5.07 8.75 -40.82 -0.36 4.72 16 31 H 0.12 2.54 7.45 -51.93 -0.39 2.15 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 2.09 7.12 -51.93 -0.37 1.72 16 LS Contribution 304.92 15.07 4.60 4.60 Total: -1.00 -33.22 304.92 -8.24 -41.46 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.69 Total: 2.03 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.87 Total: 1.00 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.35 Total: -55.32 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.22 -8.24 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030980260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.092 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds