Wall clock time and date at job start Sun Mar 29 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46823 * 2 1 4 4 H 1.09001 * 115.55205 * 29.32996 * 3 2 1 5 5 C 1.52994 * 117.52013 * 243.62686 * 3 2 1 6 6 C 1.52995 * 60.00054 * 252.51909 * 5 3 2 7 7 H 1.09003 * 117.51365 * 107.48060 * 6 5 3 8 8 C 1.50698 * 117.49988 * 252.50513 * 6 5 3 9 9 O 1.21286 * 119.99934 * 68.62686 * 8 6 5 10 10 N 1.34779 * 120.00148 * 248.62229 * 8 6 5 11 11 C 1.46499 * 119.99696 * 180.02562 * 10 8 6 12 12 C 1.53504 * 114.20382 * 205.00090 * 11 10 8 13 13 N 1.47066 * 88.04678 * 220.37387 * 12 11 10 14 14 C 1.36941 * 136.05541 * 207.05070 * 13 12 11 15 15 H 1.07998 * 119.99878 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99593 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00459 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99771 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46679 * 89.99981 * 18 16 14 20 20 H 1.48491 * 109.47288 * 209.99798 * 18 16 14 21 21 H 1.48502 * 109.47105 * 330.00301 * 18 16 14 22 22 C 1.47064 * 87.88659 * 27.09306 * 13 12 11 23 23 H 1.09001 * 109.47441 * 60.00378 * 1 2 3 24 24 H 1.09006 * 109.46867 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47419 * 299.99763 * 1 2 3 26 26 H 1.09000 * 109.46919 * 240.00209 * 2 1 3 27 27 H 1.08996 * 109.47093 * 119.99928 * 2 1 3 28 28 H 1.08999 * 117.49926 * 145.02944 * 5 3 2 29 29 H 1.09005 * 117.49936 * 0.02562 * 5 3 2 30 30 H 0.96992 * 119.99913 * 0.02562 * 10 8 6 31 31 H 1.09002 * 113.41645 * 338.19910 * 11 10 8 32 32 H 1.09002 * 113.46865 * 105.56483 * 12 11 10 33 33 H 1.08999 * 113.46581 * 335.18259 * 12 11 10 34 34 H 0.97000 * 120.00117 * 180.02562 * 17 16 14 35 35 H 1.08999 * 113.47096 * 87.65665 * 22 13 12 36 36 H 1.09005 * 113.46966 * 218.04058 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8438 1.9081 -1.2156 6 6 3.5500 1.6580 0.1184 7 1 4.1802 0.7720 0.1961 8 6 4.0227 2.8618 0.8919 9 8 3.2156 3.6162 1.3924 10 7 5.3423 3.1000 1.0277 11 6 5.8017 4.2700 1.7803 12 6 7.1969 4.7686 1.3785 13 7 7.4712 4.9962 2.8053 14 6 8.2764 5.8308 3.5336 15 1 8.9127 6.5430 3.0294 16 6 8.2746 5.7614 4.9200 17 7 7.4994 4.8932 5.5345 18 14 9.3724 6.9004 5.9136 19 1 8.6358 8.1521 6.2230 20 1 9.7638 6.2305 7.1797 21 1 10.5902 7.2240 5.1277 22 6 6.5011 3.9325 3.1057 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7210 2.9434 -1.5337 29 1 3.0092 1.1868 -2.0160 30 1 5.9877 2.4968 0.6273 31 1 5.0514 5.0567 1.8585 32 1 7.1771 5.6850 0.7886 33 1 7.8230 3.9949 0.9342 34 1 7.4979 4.8450 6.5033 35 1 6.9412 2.9354 3.1216 36 1 5.8904 4.1375 3.9850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030980260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:51 Heat of formation + Delta-G solvation = 11.958823 kcal Electronic energy + Delta-G solvation = -16520.335113 eV Core-core repulsion = 13812.943906 eV Total energy + Delta-G solvation = -2707.391206 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.22429 -39.72939 -37.81630 -35.15700 -33.82780 -32.81572 -29.61322 -26.46260 -26.28728 -24.71008 -24.11012 -21.52788 -21.48658 -20.84612 -18.80402 -18.21161 -17.38329 -16.97759 -16.05540 -15.80724 -15.70173 -15.29348 -15.13573 -14.57576 -13.84403 -13.49659 -13.42429 -13.30940 -13.17746 -12.94173 -12.87952 -12.72685 -12.30859 -12.15002 -11.97911 -11.88601 -11.43462 -11.20813 -10.99849 -10.92856 -10.72528 -9.92949 -9.01906 -7.95391 -5.31655 1.44312 1.47794 1.51237 1.56233 2.11940 2.48119 2.89694 3.25872 3.40996 3.70856 3.77183 3.80538 3.92770 4.18994 4.32114 4.34235 4.48620 4.53019 4.62021 4.70812 4.82385 4.85110 4.97230 5.04675 5.14935 5.18704 5.19510 5.27690 5.33495 5.42632 5.53480 5.68324 5.85255 6.63083 6.83510 7.31289 7.53711 8.51642 9.22111 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.058516 B = 0.004155 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.384103 B = 6736.540929 C = 6999.567741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.128 4.128 6 C -0.193 4.193 7 H 0.152 0.848 8 C 0.534 3.466 9 O -0.595 6.595 10 N -0.695 5.695 11 C 0.114 3.886 12 C 0.122 3.878 13 N -0.638 5.638 14 C -0.233 4.233 15 H 0.093 0.907 16 C -0.070 4.070 17 N -0.956 5.956 18 Si 0.987 3.013 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.263 1.263 22 C 0.143 3.857 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.137 0.863 30 H 0.417 0.583 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.249 0.751 35 H 0.028 0.972 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 -11.011 -15.664 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.147 4.147 4 H 0.106 0.894 5 C -0.166 4.166 6 C -0.214 4.214 7 H 0.169 0.831 8 C 0.323 3.677 9 O -0.476 6.476 10 N -0.346 5.346 11 C 0.007 3.993 12 C -0.004 4.004 13 N -0.365 5.365 14 C -0.360 4.360 15 H 0.111 0.889 16 C -0.263 4.263 17 N -0.604 5.604 18 Si 0.814 3.186 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.187 1.187 22 C 0.016 3.984 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.155 0.845 30 H 0.254 0.746 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.620 -10.320 -15.036 20.172 hybrid contribution 0.888 0.468 1.114 1.500 sum -7.731 -9.853 -13.922 18.727 Atomic orbital electron populations 1.21751 0.95070 1.02253 1.01712 1.21156 0.96375 0.92061 1.03060 1.22499 0.90775 0.99545 1.01840 0.89419 1.23206 0.99852 1.03386 0.90116 1.22347 0.98412 0.97919 1.02753 0.83050 1.20485 0.81999 0.86107 0.79150 1.90672 1.55173 1.50824 1.50886 1.45699 1.07197 1.27568 1.54151 1.22899 0.95131 0.88595 0.92675 1.22814 0.91684 0.99101 0.86820 1.45574 1.48761 1.39343 1.02782 1.19377 1.16450 1.11489 0.88706 0.88889 1.25788 1.01820 1.01214 0.97492 1.70058 1.43123 1.39391 1.07820 0.84956 0.78400 0.77523 0.77690 1.21216 1.22019 1.18721 1.22486 0.89521 0.91020 0.95394 0.92229 0.91325 0.93815 0.89466 0.91606 0.89447 0.84473 0.74560 0.89069 0.92280 0.91589 0.94209 0.95394 0.95328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.87 71.98 0.71 -1.40 16 2 C -0.09 -1.30 6.22 30.59 0.19 -1.11 16 3 C -0.13 -2.59 5.25 -10.80 -0.06 -2.65 16 4 H 0.09 2.33 7.60 -2.39 -0.02 2.31 16 5 C -0.13 -2.12 9.88 30.59 0.30 -1.82 16 6 C -0.19 -4.07 5.91 -11.54 -0.07 -4.14 16 7 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 8 C 0.53 17.03 7.61 87.66 0.67 17.70 16 9 O -0.59 -25.06 15.85 -3.05 -0.05 -25.11 16 10 N -0.70 -21.18 5.39 -441.60 -2.38 -23.56 16 11 C 0.11 4.57 4.61 45.49 0.21 4.78 16 12 C 0.12 4.80 8.45 83.18 0.70 5.50 16 13 N -0.64 -33.65 3.78 -737.86 -2.79 -36.44 16 14 C -0.23 -13.29 10.75 84.03 0.90 -12.39 16 15 H 0.09 4.97 7.83 -2.91 -0.02 4.95 16 16 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 17 N -0.96 -59.91 11.51 21.65 0.25 -59.66 16 18 Si 0.99 46.41 29.55 68.60 2.03 48.43 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 22 C 0.14 7.17 7.22 83.22 0.60 7.77 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.09 0.89 7.88 -2.39 -0.02 0.88 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.14 1.35 8.03 -2.38 -0.02 1.33 16 30 H 0.42 9.48 8.75 -92.71 -0.81 8.66 16 31 H 0.09 4.15 7.45 -2.39 -0.02 4.13 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 2.24 8.13 -2.39 -0.02 2.23 16 34 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.03 1.67 7.12 -2.38 -0.02 1.66 16 Total: -1.00 -74.96 304.92 1.93 -73.03 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.25 Total: 14.70 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 4.63 Total: 8.61 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -4.92 Total: -119.66 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.96 1.93 -73.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030980260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.985 kcal (2) G-P(sol) polarization free energy of solvation -74.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds