Wall clock time and date at job start Sun Mar 29 2020 22:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46874 * 2 1 4 4 C 1.50700 * 109.47002 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99711 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00126 * 179.97438 * 4 3 2 7 7 C 1.47869 * 126.94530 * 359.68999 * 6 4 3 8 8 C 1.55957 * 105.13454 * 180.59818 * 7 6 4 9 9 H 1.09003 * 116.55021 * 160.11699 * 8 7 6 10 10 C 1.58974 * 98.68034 * 34.66434 * 8 7 6 11 11 C 1.49296 * 126.94618 * 179.97438 * 6 4 3 12 12 H 1.09003 * 116.14720 * 16.70817 * 11 6 4 13 13 C 1.56012 * 104.09369 * 247.56533 * 11 6 4 14 14 N 1.47866 * 105.10321 * 288.76517 * 13 11 6 15 15 C 1.36940 * 126.94601 * 181.98613 * 14 13 11 16 16 H 1.07994 * 120.00543 * 173.69395 * 15 14 13 17 17 C 1.38819 * 119.99856 * 353.68378 * 15 14 13 18 18 N 1.31619 * 119.99698 * 6.44905 * 17 15 14 19 19 Si 1.86792 * 120.00201 * 186.44184 * 17 15 14 20 20 H 1.48498 * 109.47429 * 94.98684 * 19 17 15 21 21 H 1.48494 * 109.47390 * 214.99127 * 19 17 15 22 22 H 1.48506 * 109.47334 * 334.98798 * 19 17 15 23 23 H 1.08997 * 109.46898 * 299.99840 * 1 2 3 24 24 H 1.09003 * 109.47115 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47132 * 60.00022 * 1 2 3 26 26 H 1.08995 * 109.47132 * 119.99978 * 2 1 3 27 27 H 1.08997 * 109.46898 * 240.00160 * 2 1 3 28 28 H 1.08995 * 109.47223 * 299.99923 * 3 2 1 29 29 H 1.08997 * 109.47227 * 60.00362 * 3 2 1 30 30 H 1.08995 * 110.31501 * 300.90738 * 7 6 4 31 31 H 1.09006 * 110.31659 * 63.08801 * 7 6 4 32 32 H 1.08998 * 112.08495 * 190.72205 * 10 8 7 33 33 H 1.09002 * 113.29823 * 62.73796 * 10 8 7 34 34 H 1.08999 * 110.31891 * 47.67186 * 13 11 6 35 35 H 1.09004 * 110.31582 * 169.76098 * 13 11 6 36 36 H 0.97001 * 119.99744 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2209 2.6097 -0.0013 7 6 3.6418 3.9703 -0.0078 8 6 4.8676 4.9344 -0.0212 9 1 4.6818 5.9540 -0.3591 10 6 5.8505 4.0605 -0.9141 11 6 5.7029 2.7903 -0.0014 12 1 6.2930 1.9179 -0.2823 13 6 6.0102 3.4102 1.3969 14 7 5.4877 4.7918 1.3291 15 6 5.5579 5.7472 2.3075 16 1 5.2287 6.7552 2.1027 17 6 6.0522 5.4202 3.5629 18 7 6.5704 4.2293 3.7762 19 14 5.9820 6.6702 4.9491 20 1 4.7599 6.4411 5.7609 21 1 7.1829 6.5227 5.8099 22 1 5.9474 8.0408 4.3784 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.0143 4.1102 -0.8879 31 1 3.0640 4.1401 0.9008 32 1 6.8661 4.4562 -0.9130 33 1 5.4789 3.8908 -1.9247 34 1 5.4988 2.8502 2.1798 35 1 7.0849 3.4189 1.5791 36 1 6.9161 4.0008 4.6533 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032251112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:24 Heat of formation + Delta-G solvation = 7.933481 kcal Electronic energy + Delta-G solvation = -17603.157699 eV Core-core repulsion = 14895.591940 eV Total energy + Delta-G solvation = -2707.565758 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.97655 -37.92183 -34.17425 -33.60695 -31.51719 -29.25173 -28.56079 -27.42529 -25.17881 -23.50887 -21.87709 -20.18744 -19.83714 -18.33998 -17.13945 -16.20072 -15.82574 -15.51779 -14.71515 -14.21993 -13.92637 -13.54219 -13.12346 -12.85690 -12.31263 -12.01811 -11.85999 -11.65437 -11.62763 -11.32724 -11.09875 -10.98403 -10.85857 -10.74098 -10.64343 -10.54999 -10.23256 -10.07341 -9.66993 -9.33004 -8.69251 -7.95726 -6.93587 -5.79854 -3.13832 3.13147 3.35962 3.40848 3.43762 3.47322 4.40446 4.81436 5.01311 5.08423 5.10419 5.21779 5.34575 5.52215 5.55410 5.58398 5.62216 5.73486 5.78306 5.79541 5.93706 6.02523 6.20672 6.24794 6.30660 6.38382 6.42361 6.51637 6.59445 6.72372 7.39822 7.51815 7.71249 8.08079 8.17347 8.67345 9.08101 9.69252 10.39227 11.32614 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.006820 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.086641 B = 4104.658096 C = 4447.379624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.135 4.135 4 C 0.525 3.475 5 O -0.559 6.559 6 N -0.608 5.608 7 C 0.083 3.917 8 C 0.142 3.858 9 H 0.106 0.894 10 C -0.155 4.155 11 C 0.097 3.903 12 H 0.110 0.890 13 C 0.174 3.826 14 N -0.595 5.595 15 C -0.234 4.234 16 H 0.081 0.919 17 C -0.004 4.004 18 N -0.917 5.917 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 -2.072 -9.154 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.175 4.175 4 C 0.314 3.686 5 O -0.439 6.439 6 N -0.342 5.342 7 C -0.043 4.043 8 C 0.033 3.967 9 H 0.123 0.877 10 C -0.195 4.195 11 C -0.006 4.006 12 H 0.128 0.872 13 C 0.049 3.951 14 N -0.319 5.319 15 C -0.362 4.362 16 H 0.099 0.901 17 C -0.201 4.201 18 N -0.563 5.563 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.205 1.205 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.049 -2.670 -8.851 12.258 hybrid contribution -0.077 0.653 0.916 1.128 sum -8.126 -2.017 -7.934 11.535 Atomic orbital electron populations 1.21792 0.95819 1.01586 1.01675 1.21265 0.94857 0.95131 1.03355 1.21651 0.92430 0.99448 1.03929 1.20273 0.89752 0.82414 0.76183 1.90648 1.70620 1.30724 1.51901 1.49261 1.08039 1.05484 1.71372 1.23244 0.98195 0.82634 1.00188 1.23421 0.90295 0.95674 0.87327 0.87650 1.24494 1.01170 0.96970 0.96856 1.24313 0.80286 0.96942 0.99048 0.87166 1.21927 0.98476 0.84490 0.90232 1.45177 1.65267 1.10480 1.10965 1.19052 1.37505 0.90224 0.89427 0.90099 1.24856 1.00719 0.96958 0.97593 1.69940 1.44192 1.19967 1.22186 0.86110 0.77206 0.80207 0.82278 1.21618 1.21737 1.20531 0.92710 0.92662 0.92865 0.91313 0.91501 0.89565 0.89226 0.92624 0.91298 0.90016 0.91499 0.93174 0.93105 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.15 16 2 C -0.11 -1.40 5.22 -26.73 -0.14 -1.54 16 3 C -0.13 -1.88 4.99 -27.88 -0.14 -2.02 16 4 C 0.52 9.78 7.90 -10.99 -0.09 9.69 16 5 O -0.56 -12.21 16.33 5.55 0.09 -12.12 16 6 N -0.61 -11.43 2.94 -156.80 -0.46 -11.89 16 7 C 0.08 1.41 6.02 -1.71 -0.01 1.40 16 8 C 0.14 2.63 5.55 -61.49 -0.34 2.29 16 9 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 10 C -0.16 -2.64 6.94 -21.18 -0.15 -2.79 16 11 C 0.10 1.92 5.18 -62.54 -0.32 1.59 16 12 H 0.11 2.15 8.06 -51.93 -0.42 1.73 16 13 C 0.17 4.23 4.79 -1.68 -0.01 4.22 16 14 N -0.60 -14.36 3.06 -155.19 -0.48 -14.83 16 15 C -0.23 -6.22 10.36 -15.06 -0.16 -6.38 16 16 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 17 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 18 N -0.92 -26.86 10.61 55.49 0.59 -26.28 16 19 Si 0.91 21.65 29.56 -169.99 -5.02 16.62 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 27 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.05 1.41 7.53 -51.93 -0.39 1.02 16 35 H 0.05 1.36 7.64 -51.93 -0.40 0.96 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 293.15 15.07 4.42 4.42 Total: -1.00 -31.33 293.15 -7.76 -39.10 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.82 Total: -0.12 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.08 Total: 5.10 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.35 Total: -53.00 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.33 -7.76 -39.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032251112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.029 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds