Wall clock time and date at job start Sun Mar 29 2020 22:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46874 * 2 1 4 4 C 1.50700 * 109.47002 * 180.02562 * 3 2 1 5 5 O 1.21288 * 119.99711 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00126 * 179.97438 * 4 3 2 7 7 C 1.47869 * 126.94530 * 359.68999 * 6 4 3 8 8 C 1.55957 * 105.13454 * 180.59818 * 7 6 4 9 9 H 1.09003 * 116.55021 * 160.11699 * 8 7 6 10 10 C 1.58974 * 98.68034 * 34.66434 * 8 7 6 11 11 C 1.49296 * 126.94618 * 179.97438 * 6 4 3 12 12 H 1.09003 * 116.14720 * 16.70817 * 11 6 4 13 13 C 1.56012 * 104.09369 * 247.56533 * 11 6 4 14 14 N 1.47866 * 105.10321 * 288.76517 * 13 11 6 15 15 C 1.36940 * 126.94601 * 181.98613 * 14 13 11 16 16 H 1.07994 * 120.00543 * 173.69395 * 15 14 13 17 17 C 1.38819 * 119.99856 * 353.68378 * 15 14 13 18 18 N 1.31619 * 119.99698 * 6.44905 * 17 15 14 19 19 Si 1.86792 * 120.00201 * 186.44184 * 17 15 14 20 20 H 1.48498 * 109.47429 * 94.98684 * 19 17 15 21 21 H 1.48494 * 109.47390 * 214.99127 * 19 17 15 22 22 H 1.48506 * 109.47334 * 334.98798 * 19 17 15 23 23 H 1.08997 * 109.46898 * 299.99840 * 1 2 3 24 24 H 1.09003 * 109.47115 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47132 * 60.00022 * 1 2 3 26 26 H 1.08995 * 109.47132 * 119.99978 * 2 1 3 27 27 H 1.08997 * 109.46898 * 240.00160 * 2 1 3 28 28 H 1.08995 * 109.47223 * 299.99923 * 3 2 1 29 29 H 1.08997 * 109.47227 * 60.00362 * 3 2 1 30 30 H 1.08995 * 110.31501 * 300.90738 * 7 6 4 31 31 H 1.09006 * 110.31659 * 63.08801 * 7 6 4 32 32 H 1.08998 * 112.08495 * 190.72205 * 10 8 7 33 33 H 1.09002 * 113.29823 * 62.73796 * 10 8 7 34 34 H 1.08999 * 110.31891 * 47.67186 * 13 11 6 35 35 H 1.09004 * 110.31582 * 169.76098 * 13 11 6 36 36 H 0.97001 * 119.99744 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2209 2.6097 -0.0013 7 6 3.6418 3.9703 -0.0078 8 6 4.8676 4.9344 -0.0212 9 1 4.6818 5.9540 -0.3591 10 6 5.8505 4.0605 -0.9141 11 6 5.7029 2.7903 -0.0014 12 1 6.2930 1.9179 -0.2823 13 6 6.0102 3.4102 1.3969 14 7 5.4877 4.7918 1.3291 15 6 5.5579 5.7472 2.3075 16 1 5.2287 6.7552 2.1027 17 6 6.0522 5.4202 3.5629 18 7 6.5704 4.2293 3.7762 19 14 5.9820 6.6702 4.9491 20 1 4.7599 6.4411 5.7609 21 1 7.1829 6.5227 5.8099 22 1 5.9474 8.0408 4.3784 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.0143 4.1102 -0.8879 31 1 3.0640 4.1401 0.9008 32 1 6.8661 4.4562 -0.9130 33 1 5.4789 3.8908 -1.9247 34 1 5.4988 2.8502 2.1798 35 1 7.0849 3.4189 1.5791 36 1 6.9161 4.0008 4.6533 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032251112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:24 Heat of formation + Delta-G solvation = -11.841006 kcal Electronic energy + Delta-G solvation = -17604.015185 eV Core-core repulsion = 14895.591940 eV Total energy + Delta-G solvation = -2708.423244 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51603 -39.45884 -35.46102 -35.26466 -33.26926 -30.91241 -30.22691 -28.55733 -26.97389 -25.17623 -23.11803 -21.60105 -21.44171 -19.94556 -18.80907 -17.83876 -17.39222 -16.88646 -16.36003 -15.76686 -15.50314 -15.03644 -14.57651 -14.00903 -13.83758 -13.57362 -13.34521 -13.18932 -12.93280 -12.83257 -12.76881 -12.61201 -12.29402 -12.09956 -12.04119 -12.00550 -11.82398 -11.63968 -11.55225 -10.90275 -10.67012 -9.51563 -8.91478 -7.87257 -5.22552 1.46306 1.47748 1.56849 1.67994 2.05837 2.47679 3.29817 3.38838 3.61222 3.81731 3.92100 4.00468 4.03011 4.11170 4.19877 4.51809 4.59098 4.69016 4.70754 4.75797 4.84018 4.91464 4.97542 5.02447 5.14284 5.21418 5.25328 5.27846 5.43519 5.46620 5.55517 5.63769 6.08644 6.71801 7.01076 7.21104 7.69647 8.41033 9.24700 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.006820 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.086641 B = 4104.658096 C = 4447.379624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.125 4.125 4 C 0.514 3.486 5 O -0.601 6.601 6 N -0.613 5.613 7 C 0.091 3.909 8 C 0.135 3.865 9 H 0.137 0.863 10 C -0.130 4.130 11 C 0.096 3.904 12 H 0.107 0.893 13 C 0.187 3.813 14 N -0.615 5.615 15 C -0.231 4.231 16 H 0.098 0.902 17 C -0.071 4.071 18 N -0.958 5.958 19 Si 0.977 3.023 20 H -0.292 1.292 21 H -0.302 1.302 22 H -0.259 1.259 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.106 0.894 34 H -0.002 1.002 35 H 0.011 0.989 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.697 -0.348 -11.436 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.164 4.164 4 C 0.305 3.695 5 O -0.483 6.483 6 N -0.346 5.346 7 C -0.033 4.033 8 C 0.028 3.972 9 H 0.155 0.845 10 C -0.170 4.170 11 C -0.007 4.007 12 H 0.125 0.875 13 C 0.061 3.939 14 N -0.340 5.340 15 C -0.360 4.360 16 H 0.116 0.884 17 C -0.264 4.264 18 N -0.607 5.607 19 Si 0.806 3.194 20 H -0.219 1.219 21 H -0.229 1.229 22 H -0.183 1.183 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.016 0.984 35 H 0.029 0.971 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.376 -0.901 -11.186 15.284 hybrid contribution 0.643 0.101 1.580 1.709 sum -9.733 -0.800 -9.606 13.698 Atomic orbital electron populations 1.21740 0.93075 1.02574 1.02737 1.21257 0.97123 0.94285 1.01870 1.21703 0.88491 1.00475 1.05723 1.21220 0.91718 0.81605 0.74968 1.90625 1.71883 1.32186 1.53623 1.49399 1.07399 1.06594 1.71164 1.23209 0.97512 0.80817 1.01769 1.23860 0.90875 0.97979 0.84452 0.84531 1.24400 1.00899 0.93919 0.97753 1.24130 0.81666 0.98068 0.96854 0.87505 1.21511 0.95433 0.85189 0.91781 1.45437 1.65832 1.09669 1.13017 1.19567 1.35207 0.91330 0.89877 0.88437 1.25716 1.01615 0.98737 1.00332 1.70187 1.46369 1.22280 1.21870 0.85065 0.76225 0.78994 0.79121 1.21918 1.22941 1.18264 0.92314 0.91840 0.91051 0.93813 0.92162 0.86077 0.88654 0.87328 0.93025 0.90397 0.87586 0.98402 0.97080 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 71.98 0.71 -1.76 16 2 C -0.11 -2.63 5.22 30.60 0.16 -2.47 16 3 C -0.12 -3.17 4.99 29.85 0.15 -3.02 16 4 C 0.51 18.67 7.90 87.66 0.69 19.36 16 5 O -0.60 -26.63 16.33 -3.05 -0.05 -26.68 16 6 N -0.61 -22.13 2.94 -768.39 -2.26 -24.39 16 7 C 0.09 2.77 6.02 87.14 0.52 3.29 16 8 C 0.13 4.57 5.55 47.63 0.26 4.83 16 9 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 10 C -0.13 -4.06 6.94 34.19 0.24 -3.82 16 11 C 0.10 3.81 5.18 46.94 0.24 4.05 16 12 H 0.11 4.26 8.06 -2.39 -0.02 4.24 16 13 C 0.19 9.52 4.79 87.16 0.42 9.94 16 14 N -0.62 -29.60 3.06 -644.92 -1.98 -31.58 16 15 C -0.23 -12.23 10.36 84.03 0.87 -11.36 16 16 H 0.10 4.72 7.84 -2.91 -0.02 4.70 16 17 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 18 N -0.96 -59.12 10.61 21.65 0.23 -58.89 16 19 Si 0.98 45.21 29.56 68.60 2.03 47.24 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 27 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 28 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.00 -0.14 7.53 -2.39 -0.02 -0.15 16 35 H 0.01 0.63 7.64 -2.38 -0.02 0.62 16 36 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -72.66 293.15 3.75 -68.91 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.04 Total: 9.89 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 4.74 Total: 15.50 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -4.00 Total: -114.85 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.66 3.75 -68.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032251112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.066 kcal (2) G-P(sol) polarization free energy of solvation -72.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds