Wall clock time and date at job start Sun Mar 29 2020 22:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47301 * 2 1 4 4 C 1.50702 * 109.47360 * 119.99790 * 2 1 3 5 5 O 1.21275 * 119.99989 * 265.96150 * 4 2 1 6 6 N 1.34779 * 119.99605 * 86.23997 * 4 2 1 7 7 C 1.47870 * 126.94580 * 4.70678 * 6 4 2 8 8 C 1.55997 * 105.11289 * 181.87769 * 7 6 4 9 9 H 1.09005 * 116.80998 * 159.41891 * 8 7 6 10 10 C 1.57081 * 99.47773 * 33.16375 * 8 7 6 11 11 C 1.49289 * 126.94291 * 185.02069 * 6 4 2 12 12 H 1.09008 * 116.15288 * 15.84687 * 11 6 4 13 13 C 1.56010 * 104.09565 * 246.69771 * 11 6 4 14 14 N 1.47870 * 105.10710 * 288.76874 * 13 11 6 15 15 C 1.36939 * 126.94912 * 182.01909 * 14 13 11 16 16 H 1.07992 * 120.00074 * 179.97438 * 15 14 13 17 17 C 1.38807 * 119.99707 * 359.97438 * 15 14 13 18 18 N 1.31628 * 120.00248 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00051 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46868 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46908 * 119.99673 * 19 17 15 22 22 H 1.48495 * 109.47283 * 240.00044 * 19 17 15 23 23 H 1.08997 * 109.47220 * 299.99786 * 1 2 3 24 24 H 1.08998 * 109.47469 * 60.00262 * 1 2 3 25 25 H 1.09004 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47648 * 240.00353 * 2 1 3 27 27 H 1.09003 * 109.46771 * 64.68009 * 3 2 1 28 28 H 1.08991 * 109.47459 * 184.68481 * 3 2 1 29 29 H 1.09008 * 109.46763 * 304.69014 * 3 2 1 30 30 H 1.08994 * 110.31390 * 300.91079 * 7 6 4 31 31 H 1.09002 * 110.31247 * 63.09569 * 7 6 4 32 32 H 1.09006 * 112.37051 * 191.51215 * 10 8 7 33 33 H 1.08999 * 112.36658 * 64.06979 * 10 8 7 34 34 H 1.09004 * 110.31548 * 47.67197 * 13 11 6 35 35 H 1.09005 * 110.31972 * 169.76033 * 13 11 6 36 36 H 0.96998 * 119.99624 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3042 -0.0765 2.2280 6 7 2.1848 -2.0495 1.2204 7 6 2.0001 -2.9564 0.0672 8 6 2.2562 -4.3883 0.6307 9 1 1.8466 -5.2218 0.0600 10 6 1.7009 -4.1960 2.0875 11 6 2.5679 -2.9176 2.3729 12 1 2.4818 -2.4683 3.3624 13 6 3.9759 -3.4657 1.9841 14 7 3.7263 -4.4263 0.8880 15 6 4.6556 -5.1957 0.2402 16 1 4.3470 -5.8644 -0.5497 17 6 5.9942 -5.1159 0.5988 18 7 6.3703 -4.3005 1.5611 19 14 7.2619 -6.1659 -0.2844 20 1 6.5874 -6.9909 -1.3187 21 1 8.2682 -5.2867 -0.9321 22 1 7.9378 -7.0544 0.6948 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.7467 1.9315 0.9290 28 1 3.1266 1.4437 -0.0839 29 1 1.6096 1.9800 -0.8451 30 1 0.9839 -2.8757 -0.3187 31 1 2.7225 -2.7251 -0.7156 32 1 1.9596 -5.0275 2.7432 33 1 0.6319 -3.9833 2.0992 34 1 4.6155 -2.6540 1.6375 35 1 4.4337 -3.9705 2.8349 36 1 7.3058 -4.2446 1.8114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032282687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:26 Heat of formation + Delta-G solvation = 11.327327 kcal Electronic energy + Delta-G solvation = -17882.725864 eV Core-core repulsion = 15175.307275 eV Total energy + Delta-G solvation = -2707.418590 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.11097 -38.07214 -34.19145 -33.54396 -31.39398 -29.02924 -28.52526 -27.08292 -25.20831 -24.10153 -22.53802 -20.05202 -19.71371 -18.26687 -17.25348 -16.39044 -15.61208 -15.17459 -14.50010 -14.17975 -13.95883 -13.45160 -13.07145 -12.51793 -12.48456 -12.21015 -11.91361 -11.73558 -11.62143 -11.30244 -11.12703 -10.93537 -10.91498 -10.86388 -10.72016 -10.58364 -10.22148 -10.05181 -9.64256 -9.27111 -8.70424 -7.95221 -6.92861 -5.77042 -3.11904 3.10884 3.36515 3.41397 3.44668 3.45769 4.41285 4.75875 4.96918 5.11711 5.12607 5.20764 5.36646 5.52804 5.57212 5.63556 5.66083 5.77050 5.78774 5.86910 5.93936 5.98644 6.17313 6.24294 6.30069 6.35129 6.42397 6.52552 6.59979 6.72600 7.43046 7.50685 7.72668 8.09377 8.16947 8.66875 9.09845 9.70728 10.40026 11.34964 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033203 B = 0.007123 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.090782 B = 3929.896040 C = 4104.873449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C -0.134 4.134 4 C 0.531 3.469 5 O -0.557 6.557 6 N -0.607 5.607 7 C 0.085 3.915 8 C 0.140 3.860 9 H 0.106 0.894 10 C -0.151 4.151 11 C 0.096 3.904 12 H 0.112 0.888 13 C 0.175 3.825 14 N -0.598 5.598 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.913 3.087 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.290 1.290 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.615 4.361 -3.511 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.191 4.191 4 C 0.319 3.681 5 O -0.436 6.436 6 N -0.340 5.340 7 C -0.040 4.040 8 C 0.031 3.969 9 H 0.124 0.876 10 C -0.191 4.191 11 C -0.007 4.007 12 H 0.130 0.870 13 C 0.049 3.951 14 N -0.322 5.322 15 C -0.359 4.359 16 H 0.099 0.901 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.743 3.257 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.174 4.734 -2.995 12.500 hybrid contribution 0.868 -0.510 -0.539 1.142 sum -10.306 4.225 -3.534 11.685 Atomic orbital electron populations 1.21675 0.93060 1.02271 1.02374 1.21229 0.97391 0.97645 0.97074 1.21640 1.01317 0.93962 1.02213 1.20191 0.77575 0.80725 0.89575 1.90637 1.52134 1.65142 1.35663 1.49248 1.66939 1.05119 1.12680 1.23257 0.99074 0.92687 0.89006 1.23167 0.86886 0.93106 0.93727 0.87599 1.24159 0.97748 0.97738 0.99437 1.24325 0.98036 0.88220 0.90071 0.87030 1.21911 0.89478 0.92176 0.91493 1.45252 1.00162 1.46883 1.39891 1.19093 0.86794 1.16440 1.13615 0.90091 1.24837 0.97102 0.99602 0.98811 1.69940 1.15718 1.39576 1.31289 0.86039 0.81578 0.79415 0.78655 1.20454 1.21794 1.21717 0.92186 0.91764 0.92293 0.89427 0.91525 0.92443 0.92327 0.92847 0.91190 0.89836 0.91721 0.93530 0.92727 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.17 37.15 0.34 -1.21 16 2 C -0.11 -1.59 2.86 -91.77 -0.26 -1.85 16 3 C -0.13 -1.78 8.83 37.16 0.33 -1.45 16 4 C 0.53 9.93 6.99 -10.98 -0.08 9.86 16 5 O -0.56 -12.25 16.38 5.56 0.09 -12.16 16 6 N -0.61 -11.41 2.95 -156.80 -0.46 -11.87 16 7 C 0.09 1.45 5.60 -1.69 -0.01 1.44 16 8 C 0.14 2.59 5.52 -62.56 -0.35 2.25 16 9 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 10 C -0.15 -2.58 6.80 -22.30 -0.15 -2.73 16 11 C 0.10 1.90 5.24 -62.55 -0.33 1.58 16 12 H 0.11 2.17 8.08 -51.92 -0.42 1.75 16 13 C 0.17 4.26 4.77 -1.68 -0.01 4.25 16 14 N -0.60 -14.46 3.03 -156.35 -0.47 -14.93 16 15 C -0.23 -6.17 10.38 -15.06 -0.16 -6.33 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 18 N -0.92 -27.00 10.56 55.49 0.59 -26.41 16 19 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.65 7.80 -51.93 -0.40 0.25 16 26 H 0.09 1.19 7.44 -51.93 -0.39 0.80 16 27 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.05 0.73 7.80 -51.93 -0.40 0.33 16 31 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 1.32 7.68 -51.93 -0.40 0.92 16 35 H 0.05 1.47 7.46 -51.93 -0.39 1.08 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 290.62 15.07 4.38 4.38 Total: -1.00 -31.53 290.62 -7.39 -38.92 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.73 Total: -0.18 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.76 Total: 5.52 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.35 Total: -53.21 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.53 -7.39 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032282687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.251 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds