Wall clock time and date at job start Sun Mar 29 2020 22:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47301 * 2 1 4 4 C 1.50702 * 109.47360 * 119.99790 * 2 1 3 5 5 O 1.21275 * 119.99989 * 265.96150 * 4 2 1 6 6 N 1.34779 * 119.99605 * 86.23997 * 4 2 1 7 7 C 1.47870 * 126.94580 * 4.70678 * 6 4 2 8 8 C 1.55997 * 105.11289 * 181.87769 * 7 6 4 9 9 H 1.09005 * 116.80998 * 159.41891 * 8 7 6 10 10 C 1.57081 * 99.47773 * 33.16375 * 8 7 6 11 11 C 1.49289 * 126.94291 * 185.02069 * 6 4 2 12 12 H 1.09008 * 116.15288 * 15.84687 * 11 6 4 13 13 C 1.56010 * 104.09565 * 246.69771 * 11 6 4 14 14 N 1.47870 * 105.10710 * 288.76874 * 13 11 6 15 15 C 1.36939 * 126.94912 * 182.01909 * 14 13 11 16 16 H 1.07992 * 120.00074 * 179.97438 * 15 14 13 17 17 C 1.38807 * 119.99707 * 359.97438 * 15 14 13 18 18 N 1.31628 * 120.00248 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00051 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46868 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46908 * 119.99673 * 19 17 15 22 22 H 1.48495 * 109.47283 * 240.00044 * 19 17 15 23 23 H 1.08997 * 109.47220 * 299.99786 * 1 2 3 24 24 H 1.08998 * 109.47469 * 60.00262 * 1 2 3 25 25 H 1.09004 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47648 * 240.00353 * 2 1 3 27 27 H 1.09003 * 109.46771 * 64.68009 * 3 2 1 28 28 H 1.08991 * 109.47459 * 184.68481 * 3 2 1 29 29 H 1.09008 * 109.46763 * 304.69014 * 3 2 1 30 30 H 1.08994 * 110.31390 * 300.91079 * 7 6 4 31 31 H 1.09002 * 110.31247 * 63.09569 * 7 6 4 32 32 H 1.09006 * 112.37051 * 191.51215 * 10 8 7 33 33 H 1.08999 * 112.36658 * 64.06979 * 10 8 7 34 34 H 1.09004 * 110.31548 * 47.67197 * 13 11 6 35 35 H 1.09005 * 110.31972 * 169.76033 * 13 11 6 36 36 H 0.96998 * 119.99624 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3042 -0.0765 2.2280 6 7 2.1848 -2.0495 1.2204 7 6 2.0001 -2.9564 0.0672 8 6 2.2562 -4.3883 0.6307 9 1 1.8466 -5.2218 0.0600 10 6 1.7009 -4.1960 2.0875 11 6 2.5679 -2.9176 2.3729 12 1 2.4818 -2.4683 3.3624 13 6 3.9759 -3.4657 1.9841 14 7 3.7263 -4.4263 0.8880 15 6 4.6556 -5.1957 0.2402 16 1 4.3470 -5.8644 -0.5497 17 6 5.9942 -5.1159 0.5988 18 7 6.3703 -4.3005 1.5611 19 14 7.2619 -6.1659 -0.2844 20 1 6.5874 -6.9909 -1.3187 21 1 8.2682 -5.2867 -0.9321 22 1 7.9378 -7.0544 0.6948 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.7467 1.9315 0.9290 28 1 3.1266 1.4437 -0.0839 29 1 1.6096 1.9800 -0.8451 30 1 0.9839 -2.8757 -0.3187 31 1 2.7225 -2.7251 -0.7156 32 1 1.9596 -5.0275 2.7432 33 1 0.6319 -3.9833 2.0992 34 1 4.6155 -2.6540 1.6375 35 1 4.4337 -3.9705 2.8349 36 1 7.3058 -4.2446 1.8114 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032282687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:26 Heat of formation + Delta-G solvation = -8.979406 kcal Electronic energy + Delta-G solvation = -17883.606431 eV Core-core repulsion = 15175.307275 eV Total energy + Delta-G solvation = -2708.299156 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.64507 -39.60398 -35.55148 -35.25663 -33.15100 -30.71907 -30.23763 -28.04127 -26.98452 -25.68143 -24.04384 -21.54270 -21.34002 -19.85143 -18.81389 -18.05764 -17.31591 -16.65793 -16.17786 -15.69702 -15.37438 -15.05912 -14.51763 -13.92056 -13.76256 -13.58856 -13.38910 -13.18647 -13.05622 -12.92677 -12.77953 -12.70752 -12.33587 -12.13580 -12.07647 -12.01950 -11.96517 -11.79362 -11.53597 -10.88487 -10.62403 -9.52287 -8.92193 -7.85416 -5.21773 1.46179 1.46849 1.57233 1.66191 2.03649 2.47727 3.32084 3.36490 3.58182 3.77801 3.89035 3.95422 4.04482 4.12465 4.20947 4.43113 4.59359 4.69230 4.77258 4.81300 4.86964 4.91563 4.93606 5.01010 5.06851 5.14348 5.24169 5.29327 5.32642 5.44510 5.54338 5.64181 6.08817 6.70642 7.01623 7.20131 7.69978 8.40638 9.25957 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.033203 B = 0.007123 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.090782 B = 3929.896040 C = 4104.873449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.133 4.133 4 C 0.520 3.480 5 O -0.600 6.600 6 N -0.611 5.611 7 C 0.093 3.907 8 C 0.134 3.866 9 H 0.138 0.862 10 C -0.127 4.127 11 C 0.096 3.904 12 H 0.109 0.891 13 C 0.188 3.812 14 N -0.618 5.618 15 C -0.228 4.228 16 H 0.098 0.902 17 C -0.075 4.075 18 N -0.959 5.959 19 Si 0.978 3.022 20 H -0.256 1.256 21 H -0.301 1.301 22 H -0.297 1.297 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.105 0.895 34 H -0.008 1.008 35 H 0.015 0.985 36 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 3.696 -5.718 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.128 4.128 3 C -0.190 4.190 4 C 0.311 3.689 5 O -0.482 6.482 6 N -0.343 5.343 7 C -0.031 4.031 8 C 0.028 3.972 9 H 0.156 0.844 10 C -0.166 4.166 11 C -0.007 4.007 12 H 0.127 0.873 13 C 0.062 3.938 14 N -0.342 5.342 15 C -0.357 4.357 16 H 0.116 0.884 17 C -0.267 4.267 18 N -0.609 5.609 19 Si 0.807 3.193 20 H -0.180 1.180 21 H -0.228 1.228 22 H -0.224 1.224 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.010 0.990 35 H 0.033 0.967 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -14.261 4.046 -5.248 15.726 hybrid contribution 1.778 -0.277 0.152 1.805 sum -12.483 3.770 -5.096 14.001 Atomic orbital electron populations 1.21681 0.90204 1.03278 1.03529 1.21327 0.99587 0.97242 0.94631 1.21661 1.00312 0.93967 1.03071 1.21181 0.76670 0.80493 0.90594 1.90613 1.53938 1.65932 1.37694 1.49378 1.66618 1.05579 1.12758 1.23199 1.01412 0.90896 0.87627 1.23622 0.83346 0.95006 0.95225 0.84421 1.24056 0.99249 0.95452 0.97878 1.24154 0.95738 0.90157 0.90697 0.87308 1.21488 0.91478 0.90471 0.90357 1.45524 1.02850 1.46281 1.39571 1.19609 0.87348 1.15674 1.13048 0.88400 1.25713 0.99483 1.01432 1.00113 1.70192 1.15158 1.41980 1.33567 0.84996 0.78866 0.77684 0.77725 1.17973 1.22829 1.22420 0.92963 0.88697 0.91360 0.88319 0.92892 0.94382 0.88687 0.87667 0.93067 0.90240 0.87675 0.98982 0.96669 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.17 71.98 0.66 -1.75 16 2 C -0.11 -2.77 2.86 -11.54 -0.03 -2.80 16 3 C -0.13 -3.32 8.83 71.98 0.64 -2.69 16 4 C 0.52 19.08 6.99 87.66 0.61 19.69 16 5 O -0.60 -26.92 16.38 -3.02 -0.05 -26.97 16 6 N -0.61 -22.21 2.95 -768.37 -2.26 -24.48 16 7 C 0.09 2.86 5.60 87.15 0.49 3.35 16 8 C 0.13 4.56 5.52 46.92 0.26 4.82 16 9 H 0.14 3.85 8.14 -2.38 -0.02 3.83 16 10 C -0.13 -3.97 6.80 33.46 0.23 -3.74 16 11 C 0.10 3.81 5.24 46.93 0.25 4.06 16 12 H 0.11 4.34 8.08 -2.38 -0.02 4.32 16 13 C 0.19 9.64 4.77 87.16 0.42 10.05 16 14 N -0.62 -29.85 3.03 -648.58 -1.96 -31.82 16 15 C -0.23 -12.11 10.38 84.03 0.87 -11.24 16 16 H 0.10 4.76 7.83 -2.91 -0.02 4.74 16 17 C -0.08 -4.26 5.49 84.86 0.47 -3.79 16 18 N -0.96 -59.47 10.56 21.65 0.23 -59.24 16 19 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.16 7.80 -2.38 -0.02 1.14 16 26 H 0.10 2.36 7.44 -2.39 -0.02 2.35 16 27 H 0.05 1.47 7.69 -2.39 -0.02 1.45 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.11 2.26 7.80 -2.39 -0.02 2.24 16 31 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 32 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 34 H -0.01 -0.49 7.68 -2.39 -0.02 -0.51 16 35 H 0.02 0.88 7.46 -2.38 -0.02 0.86 16 36 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -73.55 290.62 3.87 -69.68 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.04 Total: 9.35 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 4.85 Total: 15.96 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -4.00 Total: -115.53 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -73.55 3.87 -69.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032282687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.701 kcal (2) G-P(sol) polarization free energy of solvation -73.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds