Wall clock time and date at job start Sun Mar 29 2020 22:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 110.63987 * 2 1 4 4 C 1.34784 * 119.99864 * 298.30923 * 3 2 1 5 5 O 1.21283 * 119.99649 * 359.72839 * 4 3 2 6 6 C 1.50694 * 119.99988 * 179.72721 * 4 3 2 7 7 C 1.52995 * 117.49753 * 248.62139 * 6 4 3 8 8 C 1.52994 * 60.00282 * 252.51014 * 7 6 4 9 9 C 1.55161 * 110.86997 * 123.24742 * 2 1 3 10 10 C 1.54913 * 101.58077 * 153.93971 * 9 2 1 11 11 N 1.47431 * 104.82732 * 322.98650 * 10 9 2 12 12 C 1.36942 * 125.64286 * 204.09723 * 11 10 9 13 13 H 1.07995 * 119.99423 * 180.02562 * 12 11 10 14 14 C 1.38810 * 120.00094 * 0.03659 * 12 11 10 15 15 N 1.31614 * 120.00235 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99695 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46966 * 90.00435 * 16 14 12 18 18 H 1.48495 * 109.47192 * 210.00172 * 16 14 12 19 19 H 1.48495 * 109.47521 * 330.00785 * 16 14 12 20 20 C 1.47021 * 108.70545 * 24.12952 * 11 10 9 21 21 H 1.08995 * 109.46933 * 59.30311 * 1 2 3 22 22 H 1.09007 * 109.47231 * 179.30270 * 1 2 3 23 23 H 1.09000 * 109.46842 * 299.29869 * 1 2 3 24 24 H 0.97000 * 120.00740 * 118.03615 * 3 2 1 25 25 H 1.08997 * 115.55039 * 34.32852 * 6 4 3 26 26 H 1.09002 * 117.50448 * 0.02562 * 7 6 4 27 27 H 1.09010 * 117.49952 * 145.02226 * 7 6 4 28 28 H 1.08995 * 117.50265 * 252.51175 * 8 7 6 29 29 H 1.08999 * 117.52102 * 107.47741 * 8 7 6 30 30 H 1.09003 * 111.00241 * 272.00524 * 9 2 1 31 31 H 1.08990 * 111.00837 * 35.86010 * 9 2 1 32 32 H 1.09001 * 110.36657 * 204.14910 * 10 9 2 33 33 H 1.08993 * 110.37086 * 81.82160 * 10 9 2 34 34 H 0.97005 * 119.99933 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.88520 * 239.52213 * 20 11 10 36 36 H 1.09002 * 110.00683 * 118.43109 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7659 2.1967 -1.0277 5 8 1.0901 1.8031 -1.9547 6 6 2.2920 3.6088 -1.0248 7 6 1.2756 4.7409 -0.8629 8 6 1.9389 4.4967 -2.2197 9 6 2.0828 -0.7949 1.2125 10 6 3.4674 -1.2455 0.6838 11 7 3.2471 -1.5462 -0.7426 12 6 4.0077 -2.3902 -1.5070 13 1 3.7633 -2.5440 -2.5476 14 6 5.0927 -3.0482 -0.9442 15 7 5.3901 -2.8612 0.3242 16 14 6.1298 -4.2000 -1.9869 17 1 7.2366 -3.4360 -2.6168 18 1 6.6944 -5.2718 -1.1280 19 1 5.2832 -4.8077 -3.0447 20 6 2.0760 -0.7892 -1.2086 21 1 -0.3633 0.5246 -0.8836 22 1 -0.3634 -1.0276 -0.0125 23 1 -0.3633 0.5029 0.8962 24 1 2.5869 1.6857 0.7414 25 1 3.2732 3.7440 -0.5698 26 1 0.2265 4.4643 -0.7580 27 1 1.5881 5.6213 -0.3011 28 1 2.6877 5.2162 -2.5507 29 1 1.3266 4.0592 -3.0082 30 1 2.1887 -0.1514 2.0860 31 1 1.4515 -1.6546 1.4367 32 1 3.8032 -2.1378 1.2122 33 1 4.1955 -0.4419 0.7940 34 1 6.1482 -3.3214 0.7175 35 1 1.3140 -1.4755 -1.5780 36 1 2.3686 -0.0994 -2.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046092730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:47 Heat of formation + Delta-G solvation = 15.338270 kcal Electronic energy + Delta-G solvation = -17588.190816 eV Core-core repulsion = 14880.946153 eV Total energy + Delta-G solvation = -2707.244662 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.00143 -37.75128 -35.78484 -33.94264 -31.81290 -29.96370 -28.65197 -25.67296 -24.61483 -23.35266 -22.45769 -20.44440 -19.92047 -18.96334 -17.35319 -16.74441 -15.59671 -15.13898 -14.65223 -14.39214 -14.13915 -13.66324 -13.18401 -12.72274 -12.42393 -12.20553 -11.98411 -11.73028 -11.58160 -11.53199 -10.92311 -10.84729 -10.63392 -10.51675 -10.35808 -10.28390 -10.06137 -9.89421 -9.62934 -9.21157 -8.62289 -8.56526 -6.77978 -5.62570 -3.02678 2.78495 3.42337 3.45819 3.47578 3.49677 3.90848 4.52318 4.74734 4.84578 4.88395 5.12267 5.31922 5.41994 5.50837 5.53107 5.60133 5.73504 5.77680 5.91322 6.06453 6.10330 6.18758 6.25668 6.39185 6.48723 6.54511 6.74389 6.88092 7.20373 7.48195 7.66528 7.83662 7.93800 8.38094 8.61616 9.26150 9.86889 10.52044 11.41888 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032009 B = 0.006545 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.556462 B = 4277.362715 C = 4612.233102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 N -0.704 5.704 4 C 0.543 3.457 5 O -0.540 6.540 6 C -0.192 4.192 7 C -0.155 4.155 8 C -0.149 4.149 9 C -0.146 4.146 10 C 0.153 3.847 11 N -0.604 5.604 12 C -0.216 4.216 13 H 0.077 0.923 14 C -0.014 4.014 15 N -0.926 5.926 16 Si 0.914 3.086 17 H -0.290 1.290 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.137 3.863 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.397 0.603 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.010 0.990 34 H 0.251 0.749 35 H 0.029 0.971 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 12.358 2.477 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.072 3.928 3 N -0.354 5.354 4 C 0.329 3.671 5 O -0.418 6.418 6 C -0.213 4.213 7 C -0.193 4.193 8 C -0.186 4.186 9 C -0.185 4.185 10 C 0.028 3.972 11 N -0.330 5.330 12 C -0.345 4.345 13 H 0.094 0.906 14 C -0.208 4.208 15 N -0.575 5.575 16 Si 0.745 3.255 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.010 3.990 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.231 0.769 25 H 0.139 0.861 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.028 0.972 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.595 11.896 1.821 14.231 hybrid contribution 1.036 -0.376 -0.096 1.106 sum -6.559 11.520 1.724 13.368 Atomic orbital electron populations 1.22029 0.94419 1.02209 1.02072 1.21349 0.92866 0.80524 0.98013 1.45905 1.53975 1.12552 1.22962 1.19501 0.79805 0.85763 0.81998 1.90650 1.39364 1.76654 1.35091 1.22241 1.01386 0.90589 1.07114 1.22894 0.97864 0.97926 1.00600 1.22908 1.03165 1.00718 0.91817 1.23350 1.01251 0.98818 0.95100 1.21932 0.89373 1.00590 0.85297 1.44513 1.30540 1.50529 1.07462 1.19107 1.05914 1.16515 0.92947 0.90562 1.24756 0.98796 1.00826 0.96470 1.69777 1.30032 1.46714 1.10978 0.86065 0.80235 0.80234 0.78968 1.21727 1.21669 1.20693 1.21598 0.90218 0.93134 0.94037 0.91152 0.91779 0.93199 0.76853 0.86083 0.88430 0.88120 0.88205 0.87445 0.91931 0.90574 0.87458 0.97208 0.93836 0.95325 0.94750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.45 37.16 0.31 -2.10 16 2 C 0.16 2.91 0.81 -129.98 -0.11 2.81 16 3 N -0.70 -11.48 5.14 -45.91 -0.24 -11.72 16 4 C 0.54 9.02 6.84 -10.98 -0.08 8.95 16 5 O -0.54 -10.72 13.17 5.56 0.07 -10.65 16 6 C -0.19 -2.41 6.19 -91.78 -0.57 -2.98 16 7 C -0.16 -1.56 10.23 -26.74 -0.27 -1.83 16 8 C -0.15 -1.68 10.04 -26.73 -0.27 -1.95 16 9 C -0.15 -2.70 6.09 -24.58 -0.15 -2.85 16 10 C 0.15 3.69 5.87 -2.52 -0.01 3.67 16 11 N -0.60 -16.02 3.39 -170.07 -0.58 -16.60 16 12 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 13 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 14 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 15 N -0.93 -27.15 10.09 55.49 0.56 -26.60 16 16 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.14 3.15 6.13 -3.07 -0.02 3.13 16 21 H 0.07 1.23 6.39 -51.93 -0.33 0.90 16 22 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.40 5.55 8.47 -40.82 -0.35 5.21 16 25 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.11 1.39 7.67 -51.93 -0.40 0.99 16 30 H 0.06 0.97 8.04 -51.93 -0.42 0.56 16 31 H 0.08 1.38 8.05 -51.93 -0.42 0.97 16 32 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.03 0.67 7.80 -51.93 -0.41 0.27 16 36 H 0.03 0.87 6.46 -51.93 -0.34 0.53 16 LS Contribution 290.95 15.07 4.38 4.38 Total: -1.00 -32.28 290.95 -7.69 -39.97 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.46 Total: 3.71 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.41 Total: -0.04 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.25 Total: -54.91 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.28 -7.69 -39.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046092730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.310 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds