Wall clock time and date at job start Sun Mar 29 2020 22:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 110.63987 * 2 1 4 4 C 1.34784 * 119.99864 * 298.30923 * 3 2 1 5 5 O 1.21283 * 119.99649 * 359.72839 * 4 3 2 6 6 C 1.50694 * 119.99988 * 179.72721 * 4 3 2 7 7 C 1.52995 * 117.49753 * 248.62139 * 6 4 3 8 8 C 1.52994 * 60.00282 * 252.51014 * 7 6 4 9 9 C 1.55161 * 110.86997 * 123.24742 * 2 1 3 10 10 C 1.54913 * 101.58077 * 153.93971 * 9 2 1 11 11 N 1.47431 * 104.82732 * 322.98650 * 10 9 2 12 12 C 1.36942 * 125.64286 * 204.09723 * 11 10 9 13 13 H 1.07995 * 119.99423 * 180.02562 * 12 11 10 14 14 C 1.38810 * 120.00094 * 0.03659 * 12 11 10 15 15 N 1.31614 * 120.00235 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99695 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46966 * 90.00435 * 16 14 12 18 18 H 1.48495 * 109.47192 * 210.00172 * 16 14 12 19 19 H 1.48495 * 109.47521 * 330.00785 * 16 14 12 20 20 C 1.47021 * 108.70545 * 24.12952 * 11 10 9 21 21 H 1.08995 * 109.46933 * 59.30311 * 1 2 3 22 22 H 1.09007 * 109.47231 * 179.30270 * 1 2 3 23 23 H 1.09000 * 109.46842 * 299.29869 * 1 2 3 24 24 H 0.97000 * 120.00740 * 118.03615 * 3 2 1 25 25 H 1.08997 * 115.55039 * 34.32852 * 6 4 3 26 26 H 1.09002 * 117.50448 * 0.02562 * 7 6 4 27 27 H 1.09010 * 117.49952 * 145.02226 * 7 6 4 28 28 H 1.08995 * 117.50265 * 252.51175 * 8 7 6 29 29 H 1.08999 * 117.52102 * 107.47741 * 8 7 6 30 30 H 1.09003 * 111.00241 * 272.00524 * 9 2 1 31 31 H 1.08990 * 111.00837 * 35.86010 * 9 2 1 32 32 H 1.09001 * 110.36657 * 204.14910 * 10 9 2 33 33 H 1.08993 * 110.37086 * 81.82160 * 10 9 2 34 34 H 0.97005 * 119.99933 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.88520 * 239.52213 * 20 11 10 36 36 H 1.09002 * 110.00683 * 118.43109 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7659 2.1967 -1.0277 5 8 1.0901 1.8031 -1.9547 6 6 2.2920 3.6088 -1.0248 7 6 1.2756 4.7409 -0.8629 8 6 1.9389 4.4967 -2.2197 9 6 2.0828 -0.7949 1.2125 10 6 3.4674 -1.2455 0.6838 11 7 3.2471 -1.5462 -0.7426 12 6 4.0077 -2.3902 -1.5070 13 1 3.7633 -2.5440 -2.5476 14 6 5.0927 -3.0482 -0.9442 15 7 5.3901 -2.8612 0.3242 16 14 6.1298 -4.2000 -1.9869 17 1 7.2366 -3.4360 -2.6168 18 1 6.6944 -5.2718 -1.1280 19 1 5.2832 -4.8077 -3.0447 20 6 2.0760 -0.7892 -1.2086 21 1 -0.3633 0.5246 -0.8836 22 1 -0.3634 -1.0276 -0.0125 23 1 -0.3633 0.5029 0.8962 24 1 2.5869 1.6857 0.7414 25 1 3.2732 3.7440 -0.5698 26 1 0.2265 4.4643 -0.7580 27 1 1.5881 5.6213 -0.3011 28 1 2.6877 5.2162 -2.5507 29 1 1.3266 4.0592 -3.0082 30 1 2.1887 -0.1514 2.0860 31 1 1.4515 -1.6546 1.4367 32 1 3.8032 -2.1378 1.2122 33 1 4.1955 -0.4419 0.7940 34 1 6.1482 -3.3214 0.7175 35 1 1.3140 -1.4755 -1.5780 36 1 2.3686 -0.0994 -2.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046092730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:47 Heat of formation + Delta-G solvation = -6.469650 kcal Electronic energy + Delta-G solvation = -17589.136478 eV Core-core repulsion = 14880.946153 eV Total energy + Delta-G solvation = -2708.190325 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36518 -39.23727 -36.94422 -35.69365 -33.61549 -31.68320 -30.38566 -27.57151 -25.95447 -24.98679 -23.27878 -22.28877 -21.25702 -20.43906 -19.00908 -18.29487 -17.17853 -16.73143 -16.25270 -15.71486 -15.60071 -15.32828 -14.79764 -14.23218 -14.06763 -13.63665 -13.45478 -13.32164 -13.14100 -12.86416 -12.77992 -12.41042 -12.13571 -12.04519 -11.97482 -11.70362 -11.55615 -11.49273 -11.36791 -10.77039 -10.61110 -9.99738 -8.90690 -7.80726 -5.24460 1.43967 1.45641 1.54875 1.57882 2.21960 2.47083 2.96197 3.28454 3.57287 3.69000 3.81865 3.89931 4.01220 4.03966 4.16403 4.30898 4.61488 4.65341 4.75707 4.79912 4.84574 4.89491 4.94740 5.00267 5.05660 5.09258 5.25605 5.31312 5.40660 5.60087 5.70420 5.79056 6.29067 6.66483 7.09312 7.35041 7.75098 8.38864 9.20780 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032009 B = 0.006545 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.556462 B = 4277.362715 C = 4612.233102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.168 3.832 3 N -0.700 5.700 4 C 0.535 3.465 5 O -0.580 6.580 6 C -0.207 4.207 7 C -0.128 4.128 8 C -0.155 4.155 9 C -0.127 4.127 10 C 0.155 3.845 11 N -0.624 5.624 12 C -0.245 4.245 13 H 0.068 0.932 14 C -0.060 4.060 15 N -0.944 5.944 16 Si 0.979 3.021 17 H -0.287 1.287 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.136 3.864 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.411 0.589 25 H 0.140 0.860 26 H 0.092 0.908 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.077 0.923 33 H -0.007 1.007 34 H 0.249 0.751 35 H 0.019 0.981 36 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 13.736 3.555 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.081 3.919 3 N -0.351 5.351 4 C 0.323 3.677 5 O -0.460 6.460 6 C -0.228 4.228 7 C -0.165 4.165 8 C -0.192 4.192 9 C -0.165 4.165 10 C 0.030 3.970 11 N -0.350 5.350 12 C -0.374 4.374 13 H 0.086 0.914 14 C -0.253 4.253 15 N -0.594 5.594 16 Si 0.807 3.193 17 H -0.214 1.214 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.010 3.990 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.098 0.902 24 H 0.247 0.753 25 H 0.158 0.842 26 H 0.110 0.890 27 H 0.152 0.848 28 H 0.142 0.858 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.011 0.989 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -7.914 13.300 2.922 15.750 hybrid contribution 1.146 -0.799 -0.479 1.477 sum -6.767 12.500 2.443 14.423 Atomic orbital electron populations 1.21943 0.92267 1.02725 1.02819 1.21168 0.94263 0.81122 0.95331 1.45856 1.54072 1.11583 1.23607 1.20255 0.79018 0.87277 0.81128 1.90632 1.41224 1.77747 1.36435 1.22260 1.03006 0.88528 1.09029 1.23021 0.96912 0.97296 0.99286 1.22990 1.03825 1.00750 0.91681 1.23200 0.97442 0.99718 0.96170 1.21763 0.92361 0.98692 0.84145 1.44799 1.31110 1.50547 1.08521 1.19379 1.07045 1.17708 0.93237 0.91360 1.25562 0.99777 1.02216 0.97770 1.70010 1.30115 1.47158 1.12101 0.85069 0.78435 0.78167 0.77589 1.21412 1.21202 1.19893 1.21668 0.89029 0.92655 0.95667 0.92661 0.91371 0.90161 0.75301 0.84208 0.88984 0.84757 0.85797 0.89807 0.87958 0.89859 0.90556 0.98943 0.94090 0.96329 0.97469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 8.45 71.98 0.61 -3.65 16 2 C 0.17 6.01 0.81 4.80 0.00 6.01 16 3 N -0.70 -21.92 5.14 -417.56 -2.15 -24.07 16 4 C 0.53 17.43 6.84 87.65 0.60 18.03 16 5 O -0.58 -23.41 13.17 -3.04 -0.04 -23.45 16 6 C -0.21 -4.80 6.19 -11.54 -0.07 -4.88 16 7 C -0.13 -2.18 10.23 30.59 0.31 -1.86 16 8 C -0.16 -3.24 10.04 30.59 0.31 -2.94 16 9 C -0.13 -4.46 6.09 31.99 0.19 -4.26 16 10 C 0.16 7.54 5.87 86.86 0.51 8.05 16 11 N -0.62 -33.89 3.39 -691.98 -2.35 -36.24 16 12 C -0.24 -14.53 10.27 84.03 0.86 -13.66 16 13 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 14 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 15 N -0.94 -56.24 10.09 21.65 0.22 -56.03 16 16 Si 0.98 46.83 29.55 68.60 2.03 48.85 16 17 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 20 C 0.14 6.43 6.13 86.73 0.53 6.97 16 21 H 0.05 1.88 6.39 -2.39 -0.02 1.87 16 22 H 0.07 2.02 8.12 -2.38 -0.02 2.00 16 23 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.41 10.57 8.47 -92.71 -0.79 9.79 16 25 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.17 7.67 -2.39 -0.02 2.15 16 30 H 0.10 2.81 8.04 -2.39 -0.02 2.79 16 31 H 0.08 2.85 8.05 -2.39 -0.02 2.83 16 32 H 0.08 4.21 5.87 -2.39 -0.01 4.20 16 33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 35 H 0.02 0.91 7.80 -2.39 -0.02 0.89 16 36 H 0.01 0.38 6.46 -2.39 -0.02 0.37 16 Total: -1.00 -72.26 290.95 2.32 -69.94 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.29 Total: 16.23 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 4.33 Total: 4.76 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -4.28 Total: -116.34 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -72.26 2.32 -69.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046092730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.474 kcal (2) G-P(sol) polarization free energy of solvation -72.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds