Wall clock time and date at job start Sun Mar 29 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 110.88779 * 2 1 4 4 C 1.34771 * 119.99952 * 56.12298 * 3 2 1 5 5 O 1.21284 * 120.00405 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99969 * 180.02562 * 4 3 2 7 7 C 1.52999 * 117.49659 * 248.74232 * 6 4 3 8 8 C 1.52998 * 117.49860 * 180.08485 * 6 4 3 9 9 C 1.55157 * 111.00245 * 236.11883 * 2 1 3 10 10 C 1.54330 * 102.94216 * 206.39025 * 9 2 1 11 11 N 1.47024 * 107.27024 * 22.18785 * 10 9 2 12 12 C 1.36934 * 125.64602 * 181.02080 * 11 10 9 13 13 H 1.08005 * 119.99977 * 185.20920 * 12 11 10 14 14 C 1.38812 * 120.00225 * 5.21594 * 12 11 10 15 15 N 1.31622 * 119.99713 * 352.94307 * 14 12 11 16 16 Si 1.86795 * 120.00112 * 172.94052 * 14 12 11 17 17 H 1.48497 * 109.47264 * 275.00935 * 16 14 12 18 18 H 1.48508 * 109.47101 * 35.01234 * 16 14 12 19 19 H 1.48504 * 109.47228 * 155.00619 * 16 14 12 20 20 C 1.47420 * 108.70353 * 1.29157 * 11 10 9 21 21 H 1.09002 * 109.47397 * 183.88065 * 1 2 3 22 22 H 1.09009 * 109.47174 * 303.88331 * 1 2 3 23 23 H 1.09002 * 109.47029 * 63.87904 * 1 2 3 24 24 H 0.96997 * 119.99570 * 236.11793 * 3 2 1 25 25 H 1.09000 * 115.55131 * 34.40894 * 6 4 3 26 26 H 1.09003 * 117.50076 * 359.97438 * 7 6 4 27 27 H 1.09002 * 117.49902 * 145.01599 * 7 6 4 28 28 H 1.08999 * 117.49761 * 214.97700 * 8 6 4 29 29 H 1.08993 * 117.50182 * 359.97305 * 8 6 4 30 30 H 1.08999 * 110.72281 * 88.02863 * 9 2 1 31 31 H 1.09003 * 110.72157 * 324.74502 * 9 2 1 32 32 H 1.09000 * 109.87816 * 262.77979 * 10 9 2 33 33 H 1.08998 * 109.88395 * 141.61356 * 10 9 2 34 34 H 0.96999 * 119.99432 * 180.02562 * 15 14 12 35 35 H 1.09003 * 110.36644 * 94.47668 * 20 11 10 36 36 H 1.08995 * 110.36947 * 216.80156 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6847 2.2302 0.9690 5 8 0.9211 1.8726 1.8408 6 6 2.2216 3.6384 0.9687 7 6 3.1984 4.0222 2.0819 8 6 1.7683 4.5675 2.0966 9 6 2.0861 -0.8075 -1.2025 10 6 3.4678 -1.2732 -0.6968 11 7 3.4279 -1.2422 0.7726 12 6 4.4652 -1.5656 1.6060 13 1 4.3112 -1.5920 2.6747 14 6 5.7148 -1.8591 1.0774 15 7 5.8702 -1.9633 -0.2255 16 14 7.1756 -2.1063 2.2150 17 1 7.7794 -0.7888 2.5387 18 1 6.7223 -2.7642 3.4669 19 1 8.1863 -2.9627 1.5438 20 6 2.0844 -0.8118 1.2001 21 1 -0.3634 -1.0253 0.0696 22 1 -0.3634 0.5730 0.8532 23 1 -0.3633 0.4525 -0.9227 24 1 2.6627 1.6548 -0.6974 25 1 2.3802 4.0808 -0.0148 26 1 3.4525 3.2564 2.8148 27 1 3.9996 4.7174 1.8309 28 1 1.6290 5.6213 1.8552 29 1 1.0814 4.1605 2.8385 30 1 2.1915 -0.1694 -2.0799 31 1 1.4471 -1.6631 -1.4211 32 1 4.2424 -0.5983 -1.0609 33 1 3.6657 -2.2883 -1.0411 34 1 6.7432 -2.1688 -0.5948 35 1 1.4537 -1.6784 1.3986 36 1 2.1523 -0.1802 2.0858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046092731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:49 Heat of formation + Delta-G solvation = 13.798394 kcal Electronic energy + Delta-G solvation = -17750.827099 eV Core-core repulsion = 15043.515663 eV Total energy + Delta-G solvation = -2707.311436 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.91501 -37.70824 -35.71754 -33.84736 -31.81939 -29.97760 -28.65435 -25.66102 -24.55467 -23.37247 -22.33247 -20.42121 -19.80801 -18.97725 -17.30793 -16.70037 -15.54186 -14.95252 -14.62110 -14.39051 -14.21737 -13.63982 -13.20776 -12.80236 -12.34623 -12.00591 -11.89118 -11.81714 -11.64514 -11.46613 -10.88321 -10.86740 -10.53389 -10.40818 -10.30767 -10.30713 -10.06358 -9.96060 -9.65727 -9.16076 -8.61523 -8.45419 -6.77971 -5.70431 -3.01016 2.87099 3.41405 3.46700 3.48144 3.50294 4.04393 4.52457 4.84349 4.93488 4.99503 5.15351 5.29248 5.41226 5.51837 5.65725 5.66870 5.75810 5.82463 6.06112 6.07220 6.18172 6.20094 6.21196 6.40193 6.43472 6.57933 6.73373 6.83106 7.19226 7.55029 7.59807 7.81820 8.00699 8.27976 8.68138 9.24959 9.85293 10.52145 11.42015 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.008544 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.834352 B = 3276.525484 C = 4064.284097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 N -0.697 5.697 4 C 0.545 3.455 5 O -0.545 6.545 6 C -0.193 4.193 7 C -0.151 4.151 8 C -0.151 4.151 9 C -0.147 4.147 10 C 0.177 3.823 11 N -0.603 5.603 12 C -0.223 4.223 13 H 0.076 0.924 14 C -0.009 4.009 15 N -0.923 5.923 16 Si 0.909 3.091 17 H -0.289 1.289 18 H -0.282 1.282 19 H -0.291 1.291 20 C 0.134 3.866 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.399 0.601 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.251 0.749 35 H 0.025 0.975 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 10.062 -1.910 12.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.070 3.930 3 N -0.346 5.346 4 C 0.331 3.669 5 O -0.423 6.423 6 C -0.214 4.214 7 C -0.189 4.189 8 C -0.189 4.189 9 C -0.186 4.186 10 C 0.052 3.948 11 N -0.329 5.329 12 C -0.351 4.351 13 H 0.094 0.906 14 C -0.205 4.205 15 N -0.571 5.571 16 Si 0.739 3.261 17 H -0.216 1.216 18 H -0.208 1.208 19 H -0.218 1.218 20 C 0.007 3.993 21 H 0.080 0.920 22 H 0.097 0.903 23 H 0.067 0.933 24 H 0.233 0.767 25 H 0.137 0.863 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.910 9.699 -1.318 12.585 hybrid contribution 1.277 -0.080 0.026 1.280 sum -6.633 9.619 -1.292 11.756 Atomic orbital electron populations 1.22041 0.94332 1.02308 1.02458 1.21506 0.92637 0.80925 0.97976 1.45716 1.48328 1.11596 1.28923 1.19484 0.80535 0.85649 0.81193 1.90610 1.36208 1.78462 1.37040 1.22202 1.07622 0.94750 0.96798 1.22926 0.93025 1.03272 0.99630 1.22911 0.98070 0.97916 0.99954 1.23224 1.00441 0.98922 0.95968 1.21162 0.90093 0.99821 0.83749 1.44442 1.07860 1.78838 1.01790 1.19043 0.87478 1.39409 0.89182 0.90631 1.24779 0.97467 1.02204 0.96001 1.69962 1.22458 1.55157 1.09481 0.86176 0.82685 0.77514 0.79680 1.21633 1.20793 1.21753 1.21908 0.87550 0.94771 0.95096 0.92003 0.90330 0.93298 0.76711 0.86347 0.88023 0.88068 0.88399 0.87551 0.91776 0.90928 0.93481 0.94064 0.93852 0.95780 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.59 37.16 0.32 -2.13 16 2 C 0.16 2.86 0.82 -129.55 -0.11 2.75 16 3 N -0.70 -11.80 5.19 -45.52 -0.24 -12.03 16 4 C 0.55 9.31 7.00 -10.99 -0.08 9.24 16 5 O -0.54 -10.84 13.09 5.55 0.07 -10.76 16 6 C -0.19 -2.56 6.19 -91.77 -0.57 -3.13 16 7 C -0.15 -1.92 10.24 -26.70 -0.27 -2.19 16 8 C -0.15 -1.79 10.05 -26.70 -0.27 -2.06 16 9 C -0.15 -2.66 5.97 -24.89 -0.15 -2.81 16 10 C 0.18 4.21 5.37 -3.06 -0.02 4.20 16 11 N -0.60 -15.66 3.39 -169.93 -0.58 -16.23 16 12 C -0.22 -6.36 10.26 -15.06 -0.15 -6.52 16 13 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 14 C -0.01 -0.25 5.48 -17.43 -0.10 -0.34 16 15 N -0.92 -27.04 10.36 55.49 0.57 -26.46 16 16 Si 0.91 22.43 29.56 -169.99 -5.02 17.41 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 C 0.13 3.00 6.18 -2.41 -0.01 2.99 16 21 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 22 H 0.08 1.38 5.92 -51.92 -0.31 1.07 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.40 6.09 8.51 -40.82 -0.35 5.74 16 25 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.11 1.41 7.67 -51.93 -0.40 1.01 16 30 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 32 H 0.05 1.22 7.30 -51.93 -0.38 0.84 16 33 H 0.04 1.09 7.61 -51.93 -0.40 0.70 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.02 0.55 7.99 -51.93 -0.41 0.13 16 36 H 0.05 1.19 6.89 -51.93 -0.36 0.83 16 LS Contribution 291.99 15.07 4.40 4.40 Total: -1.00 -31.84 291.99 -7.71 -39.55 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.52 Total: 4.15 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.40 Total: -0.01 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.24 Total: -54.73 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.84 -7.71 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046092731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.346 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds