Wall clock time and date at job start Sun Mar 29 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 110.88779 * 2 1 4 4 C 1.34771 * 119.99952 * 56.12298 * 3 2 1 5 5 O 1.21284 * 120.00405 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99969 * 180.02562 * 4 3 2 7 7 C 1.52999 * 117.49659 * 248.74232 * 6 4 3 8 8 C 1.52998 * 117.49860 * 180.08485 * 6 4 3 9 9 C 1.55157 * 111.00245 * 236.11883 * 2 1 3 10 10 C 1.54330 * 102.94216 * 206.39025 * 9 2 1 11 11 N 1.47024 * 107.27024 * 22.18785 * 10 9 2 12 12 C 1.36934 * 125.64602 * 181.02080 * 11 10 9 13 13 H 1.08005 * 119.99977 * 185.20920 * 12 11 10 14 14 C 1.38812 * 120.00225 * 5.21594 * 12 11 10 15 15 N 1.31622 * 119.99713 * 352.94307 * 14 12 11 16 16 Si 1.86795 * 120.00112 * 172.94052 * 14 12 11 17 17 H 1.48497 * 109.47264 * 275.00935 * 16 14 12 18 18 H 1.48508 * 109.47101 * 35.01234 * 16 14 12 19 19 H 1.48504 * 109.47228 * 155.00619 * 16 14 12 20 20 C 1.47420 * 108.70353 * 1.29157 * 11 10 9 21 21 H 1.09002 * 109.47397 * 183.88065 * 1 2 3 22 22 H 1.09009 * 109.47174 * 303.88331 * 1 2 3 23 23 H 1.09002 * 109.47029 * 63.87904 * 1 2 3 24 24 H 0.96997 * 119.99570 * 236.11793 * 3 2 1 25 25 H 1.09000 * 115.55131 * 34.40894 * 6 4 3 26 26 H 1.09003 * 117.50076 * 359.97438 * 7 6 4 27 27 H 1.09002 * 117.49902 * 145.01599 * 7 6 4 28 28 H 1.08999 * 117.49761 * 214.97700 * 8 6 4 29 29 H 1.08993 * 117.50182 * 359.97305 * 8 6 4 30 30 H 1.08999 * 110.72281 * 88.02863 * 9 2 1 31 31 H 1.09003 * 110.72157 * 324.74502 * 9 2 1 32 32 H 1.09000 * 109.87816 * 262.77979 * 10 9 2 33 33 H 1.08998 * 109.88395 * 141.61356 * 10 9 2 34 34 H 0.96999 * 119.99432 * 180.02562 * 15 14 12 35 35 H 1.09003 * 110.36644 * 94.47668 * 20 11 10 36 36 H 1.08995 * 110.36947 * 216.80156 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6847 2.2302 0.9690 5 8 0.9211 1.8726 1.8408 6 6 2.2216 3.6384 0.9687 7 6 3.1984 4.0222 2.0819 8 6 1.7683 4.5675 2.0966 9 6 2.0861 -0.8075 -1.2025 10 6 3.4678 -1.2732 -0.6968 11 7 3.4279 -1.2422 0.7726 12 6 4.4652 -1.5656 1.6060 13 1 4.3112 -1.5920 2.6747 14 6 5.7148 -1.8591 1.0774 15 7 5.8702 -1.9633 -0.2255 16 14 7.1756 -2.1063 2.2150 17 1 7.7794 -0.7888 2.5387 18 1 6.7223 -2.7642 3.4669 19 1 8.1863 -2.9627 1.5438 20 6 2.0844 -0.8118 1.2001 21 1 -0.3634 -1.0253 0.0696 22 1 -0.3634 0.5730 0.8532 23 1 -0.3633 0.4525 -0.9227 24 1 2.6627 1.6548 -0.6974 25 1 2.3802 4.0808 -0.0148 26 1 3.4525 3.2564 2.8148 27 1 3.9996 4.7174 1.8309 28 1 1.6290 5.6213 1.8552 29 1 1.0814 4.1605 2.8385 30 1 2.1915 -0.1694 -2.0799 31 1 1.4471 -1.6631 -1.4211 32 1 4.2424 -0.5983 -1.0609 33 1 3.6657 -2.2883 -1.0411 34 1 6.7432 -2.1688 -0.5948 35 1 1.4537 -1.6784 1.3986 36 1 2.1523 -0.1802 2.0858 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046092731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:49 Heat of formation + Delta-G solvation = -7.541551 kcal Electronic energy + Delta-G solvation = -17751.752469 eV Core-core repulsion = 15043.515663 eV Total energy + Delta-G solvation = -2708.236806 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30759 -39.22441 -36.94554 -35.60798 -33.61765 -31.70112 -30.36549 -27.53719 -25.93304 -25.02859 -23.29774 -22.21967 -21.22695 -20.43921 -18.97184 -18.28230 -17.12015 -16.69483 -16.12853 -15.78430 -15.71182 -15.43966 -14.74664 -14.24623 -13.91282 -13.62673 -13.43218 -13.40057 -13.13753 -12.82477 -12.76585 -12.43094 -12.12373 -12.05354 -11.99140 -11.72434 -11.62303 -11.45626 -11.36386 -10.71072 -10.55066 -9.96345 -8.88430 -7.88725 -5.21583 1.42623 1.44314 1.52559 1.59472 2.23852 2.46741 2.99136 3.29160 3.55503 3.68035 3.83680 3.92530 4.00981 4.04600 4.18653 4.25727 4.62378 4.68179 4.74760 4.80477 4.84549 4.90433 4.93338 5.00275 5.04230 5.09172 5.24644 5.36531 5.41106 5.63413 5.69923 5.77859 6.18045 6.69217 7.09537 7.36409 7.75011 8.40153 9.21546 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.008544 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.834352 B = 3276.525484 C = 4064.284097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.165 3.835 3 N -0.696 5.696 4 C 0.536 3.464 5 O -0.579 6.579 6 C -0.199 4.199 7 C -0.156 4.156 8 C -0.137 4.137 9 C -0.128 4.128 10 C 0.184 3.816 11 N -0.621 5.621 12 C -0.246 4.246 13 H 0.068 0.932 14 C -0.057 4.057 15 N -0.943 5.943 16 Si 0.973 3.027 17 H -0.284 1.284 18 H -0.276 1.276 19 H -0.289 1.289 20 C 0.131 3.869 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.408 0.592 25 H 0.152 0.848 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.021 0.979 33 H 0.006 0.994 34 H 0.249 0.751 35 H 0.023 0.977 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 11.593 -2.823 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.078 3.922 3 N -0.346 5.346 4 C 0.324 3.676 5 O -0.460 6.460 6 C -0.220 4.220 7 C -0.194 4.194 8 C -0.174 4.174 9 C -0.167 4.167 10 C 0.059 3.941 11 N -0.347 5.347 12 C -0.375 4.375 13 H 0.085 0.915 14 C -0.250 4.250 15 N -0.592 5.592 16 Si 0.801 3.199 17 H -0.211 1.211 18 H -0.201 1.201 19 H -0.215 1.215 20 C 0.005 3.995 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.244 0.756 25 H 0.169 0.831 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.039 0.961 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.353 11.245 -2.238 14.185 hybrid contribution 1.405 -0.592 0.370 1.569 sum -6.947 10.653 -1.868 12.855 Atomic orbital electron populations 1.21955 0.92021 1.03026 1.03131 1.21382 0.94127 0.81198 0.95487 1.45738 1.48459 1.10993 1.29364 1.20202 0.79927 0.87100 0.80377 1.90595 1.37779 1.79441 1.38173 1.22309 1.08117 0.92730 0.98845 1.22973 0.94474 1.03182 0.98744 1.22992 0.96641 0.99345 0.98406 1.23099 0.96811 1.00024 0.96726 1.20965 0.93034 0.97385 0.82691 1.44687 1.08545 1.78802 1.02651 1.19301 0.88887 1.39863 0.89459 0.91450 1.25540 0.99748 1.02198 0.97545 1.70153 1.22658 1.55574 1.10791 0.85185 0.79234 0.77454 0.78005 1.21061 1.20125 1.21545 1.22009 0.86374 0.94928 0.96234 0.90980 0.91987 0.90545 0.75632 0.83061 0.91089 0.85284 0.84806 0.89573 0.88391 0.89117 0.96069 0.97536 0.94200 0.95900 0.95859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.59 71.98 0.62 -3.65 16 2 C 0.17 5.83 0.82 5.07 0.00 5.84 16 3 N -0.70 -22.67 5.19 -416.31 -2.16 -24.83 16 4 C 0.54 17.89 7.00 87.66 0.61 18.50 16 5 O -0.58 -23.20 13.09 -3.04 -0.04 -23.24 16 6 C -0.20 -4.89 6.19 -11.54 -0.07 -4.96 16 7 C -0.16 -3.75 10.24 30.62 0.31 -3.43 16 8 C -0.14 -2.94 10.05 30.62 0.31 -2.64 16 9 C -0.13 -4.40 5.97 31.78 0.19 -4.21 16 10 C 0.18 8.87 5.37 86.73 0.47 9.34 16 11 N -0.62 -32.97 3.39 -691.54 -2.35 -35.32 16 12 C -0.25 -14.43 10.26 84.03 0.86 -13.57 16 13 H 0.07 3.94 7.84 -2.91 -0.02 3.91 16 14 C -0.06 -3.28 5.48 84.86 0.46 -2.81 16 15 N -0.94 -56.28 10.36 21.65 0.22 -56.06 16 16 Si 0.97 46.65 29.56 68.60 2.03 48.68 16 17 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 C 0.13 5.97 6.18 86.93 0.54 6.51 16 21 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 22 H 0.06 2.10 5.92 -2.38 -0.01 2.09 16 23 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.41 11.68 8.51 -92.71 -0.79 10.89 16 25 H 0.15 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 2.23 7.67 -2.39 -0.02 2.21 16 30 H 0.10 2.74 8.09 -2.39 -0.02 2.72 16 31 H 0.09 2.83 8.04 -2.39 -0.02 2.81 16 32 H 0.02 1.11 7.30 -2.39 -0.02 1.10 16 33 H 0.01 0.35 7.61 -2.39 -0.02 0.33 16 34 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.02 1.05 7.99 -2.39 -0.02 1.03 16 36 H 0.02 1.17 6.89 -2.39 -0.02 1.15 16 Total: -1.00 -71.15 291.99 2.29 -68.86 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.28 Total: 16.99 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.31 Total: 4.92 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -4.28 Total: -116.20 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.04 Total: -23.24 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -71.15 2.29 -68.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046092731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.315 kcal (2) G-P(sol) polarization free energy of solvation -71.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds