Wall clock time and date at job start Sun Mar 29 2020 22:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46573 * 2 1 4 4 O 1.21274 * 120.00042 * 359.72068 * 3 2 1 5 5 N 1.34777 * 119.99766 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00266 * 179.97438 * 5 3 2 7 7 H 1.09006 * 110.55413 * 36.45139 * 6 5 3 8 8 C 1.54849 * 110.62929 * 273.55364 * 6 5 3 9 9 C 1.55854 * 103.44352 * 241.50668 * 8 6 5 10 10 H 1.08999 * 115.55698 * 158.81155 * 9 8 6 11 11 C 1.55838 * 105.06252 * 288.17210 * 9 8 6 12 12 C 1.54857 * 103.44550 * 71.82416 * 11 9 8 13 13 C 1.55846 * 103.44529 * 0.02562 * 12 11 9 14 14 H 1.08995 * 116.13052 * 159.15082 * 13 12 11 15 15 N 1.50237 * 101.04944 * 32.93775 * 9 8 6 16 16 C 1.36938 * 130.83896 * 126.01085 * 15 9 8 17 17 H 1.08001 * 119.99585 * 180.02562 * 16 15 9 18 18 C 1.38808 * 119.99741 * 0.02581 * 16 15 9 19 19 N 1.31617 * 120.00184 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99603 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47409 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47492 * 120.00035 * 20 18 16 23 23 H 1.48504 * 109.47063 * 239.99734 * 20 18 16 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 299.99934 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00657 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00066 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99343 * 2 1 3 29 29 H 0.96999 * 120.00043 * 0.02562 * 5 3 2 30 30 H 1.08998 * 110.62707 * 359.97438 * 8 6 5 31 31 H 1.09001 * 110.63178 * 122.85959 * 8 6 5 32 32 H 1.08995 * 110.62667 * 190.31190 * 11 9 8 33 33 H 1.08997 * 110.63179 * 313.33754 * 11 9 8 34 34 H 1.08993 * 110.62889 * 241.51008 * 12 11 9 35 35 H 1.09002 * 110.76054 * 118.54862 * 12 11 9 36 36 H 0.97009 * 119.99478 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 -0.0051 5 7 3.3573 1.6673 0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1988 3.6833 0.6057 8 6 3.9435 3.5919 -1.4467 9 6 5.4604 3.9088 -1.6129 10 1 5.8201 3.9608 -2.6405 11 6 5.7090 5.1714 -0.7340 12 6 5.6110 4.6280 0.7128 13 6 5.3172 3.1108 0.5109 14 1 5.5504 2.4604 1.3539 15 7 6.0738 2.8369 -0.7574 16 6 7.0288 1.8986 -1.0452 17 1 7.3461 1.2003 -0.2848 18 6 7.5891 1.8452 -2.3141 19 7 7.2020 2.6960 -3.2407 20 14 8.8913 0.5648 -2.7068 21 1 9.1479 -0.2658 -1.5029 22 1 8.4151 -0.3020 -3.8145 23 1 10.1468 1.2448 -3.1151 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.9876 0.9300 0.0005 30 1 3.6291 2.8336 -2.1638 31 1 3.3453 4.4963 -1.5586 32 1 6.7007 5.5820 -0.9235 33 1 4.9403 5.9226 -0.9147 34 1 4.7937 5.1097 1.2494 35 1 6.5529 4.7690 1.2431 36 1 7.5934 2.6583 -4.1276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096692240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:29 Heat of formation + Delta-G solvation = -4.752317 kcal Electronic energy + Delta-G solvation = -17757.185411 eV Core-core repulsion = 15049.069555 eV Total energy + Delta-G solvation = -2708.115856 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74695 -38.35824 -33.70404 -32.66467 -32.40201 -29.12599 -28.82993 -27.76660 -24.46195 -23.91910 -21.17768 -19.83498 -19.55629 -18.61573 -17.00872 -16.69970 -15.72545 -15.23483 -14.81990 -14.07584 -13.96502 -13.45679 -13.12573 -12.95980 -12.14088 -11.99547 -11.82179 -11.62365 -11.24761 -11.10682 -11.02169 -10.94574 -10.91848 -10.49516 -10.36084 -10.09309 -9.91560 -9.62369 -9.23129 -9.10247 -8.97257 -8.39179 -6.96071 -5.76190 -3.15329 3.06892 3.34430 3.39547 3.42507 3.73080 4.39047 5.03346 5.13153 5.20859 5.24035 5.35128 5.64566 5.69792 5.72611 5.85444 5.87858 6.01857 6.07202 6.13616 6.16557 6.27574 6.33336 6.43964 6.51290 6.62394 6.76627 6.84182 6.96596 7.16768 7.34592 7.46326 7.78592 8.07516 8.16476 8.71632 9.05648 9.68889 10.50350 11.32896 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.008287 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.382209 B = 3377.918271 C = 4126.297737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C 0.506 3.494 4 O -0.556 6.556 5 N -0.708 5.708 6 C 0.128 3.872 7 H 0.076 0.924 8 C -0.142 4.142 9 C 0.153 3.847 10 H 0.153 0.847 11 C -0.138 4.138 12 C -0.127 4.127 13 C 0.125 3.875 14 H 0.087 0.913 15 N -0.591 5.591 16 C -0.214 4.214 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.291 1.291 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.402 0.598 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -2.489 6.122 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.186 4.186 3 C 0.292 3.708 4 O -0.435 6.435 5 N -0.357 5.357 6 C 0.022 3.978 7 H 0.094 0.906 8 C -0.182 4.182 9 C 0.047 3.953 10 H 0.169 0.831 11 C -0.178 4.178 12 C -0.167 4.167 13 C 0.017 3.983 14 H 0.105 0.895 15 N -0.312 5.312 16 C -0.342 4.342 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.567 5.567 20 Si 0.746 3.254 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.218 1.218 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.236 0.764 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.247 -1.995 5.923 9.570 hybrid contribution 1.031 -0.992 -0.221 1.447 sum -6.216 -2.986 5.702 8.948 Atomic orbital electron populations 1.21491 0.93472 1.01008 1.03143 1.21629 0.98248 0.94665 1.04088 1.20680 0.82608 0.91414 0.76100 1.90643 1.55505 1.46610 1.50746 1.46064 1.06446 1.09712 1.73497 1.22618 0.95847 0.81488 0.97862 0.90630 1.23446 1.00041 0.99413 0.95328 1.23760 0.88001 0.84916 0.98651 0.83052 1.23046 1.00042 0.98920 0.95752 1.22867 0.99855 0.96641 0.97370 1.23166 0.89568 0.94645 0.90963 0.89471 1.46537 1.43037 1.35510 1.06094 1.19050 1.11871 1.07296 0.95962 0.90352 1.24708 1.00434 0.99501 0.96020 1.69480 1.45431 1.38138 1.03669 0.85994 0.81092 0.80482 0.77850 1.20611 1.21851 1.21805 0.92538 0.92236 0.92111 0.89118 0.89379 0.76399 0.92365 0.92934 0.92627 0.93311 0.93024 0.92471 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.20 37.16 0.34 -1.22 16 2 C -0.15 -1.81 6.42 -27.88 -0.18 -1.99 16 3 C 0.51 8.54 7.83 -10.98 -0.09 8.45 16 4 O -0.56 -11.27 15.70 5.56 0.09 -11.18 16 5 N -0.71 -12.28 5.10 -51.37 -0.26 -12.54 16 6 C 0.13 2.44 2.73 -65.41 -0.18 2.26 16 7 H 0.08 1.45 7.37 -51.93 -0.38 1.07 16 8 C -0.14 -2.97 6.22 -24.23 -0.15 -3.12 16 9 C 0.15 3.52 4.72 -62.80 -0.30 3.22 16 10 H 0.15 3.99 5.52 -51.93 -0.29 3.70 16 11 C -0.14 -2.76 6.44 -24.24 -0.16 -2.92 16 12 C -0.13 -2.33 6.44 -24.23 -0.16 -2.48 16 13 C 0.13 2.44 5.04 -62.78 -0.32 2.13 16 14 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 15 N -0.59 -13.99 2.98 -145.81 -0.44 -14.42 16 16 C -0.21 -5.56 10.59 -15.06 -0.16 -5.72 16 17 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.92 -25.78 10.46 55.49 0.58 -25.20 16 20 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.40 6.62 8.62 -40.82 -0.35 6.27 16 30 H 0.06 1.32 7.98 -51.93 -0.41 0.91 16 31 H 0.05 1.04 7.82 -51.93 -0.41 0.63 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.88 7.82 -51.93 -0.41 0.47 16 34 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -29.68 290.38 -7.69 -37.36 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.58 Total: 7.11 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.43 Total: -1.78 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.12 Total: -52.16 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.68 -7.69 -37.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096692240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.611 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds