Wall clock time and date at job start Sun Mar 29 2020 22:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46573 * 2 1 4 4 O 1.21274 * 120.00042 * 359.72068 * 3 2 1 5 5 N 1.34777 * 119.99766 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00266 * 179.97438 * 5 3 2 7 7 H 1.09006 * 110.55413 * 36.45139 * 6 5 3 8 8 C 1.54849 * 110.62929 * 273.55364 * 6 5 3 9 9 C 1.55854 * 103.44352 * 241.50668 * 8 6 5 10 10 H 1.08999 * 115.55698 * 158.81155 * 9 8 6 11 11 C 1.55838 * 105.06252 * 288.17210 * 9 8 6 12 12 C 1.54857 * 103.44550 * 71.82416 * 11 9 8 13 13 C 1.55846 * 103.44529 * 0.02562 * 12 11 9 14 14 H 1.08995 * 116.13052 * 159.15082 * 13 12 11 15 15 N 1.50237 * 101.04944 * 32.93775 * 9 8 6 16 16 C 1.36938 * 130.83896 * 126.01085 * 15 9 8 17 17 H 1.08001 * 119.99585 * 180.02562 * 16 15 9 18 18 C 1.38808 * 119.99741 * 0.02581 * 16 15 9 19 19 N 1.31617 * 120.00184 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99603 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47409 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47492 * 120.00035 * 20 18 16 23 23 H 1.48504 * 109.47063 * 239.99734 * 20 18 16 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 299.99934 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00657 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00066 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99343 * 2 1 3 29 29 H 0.96999 * 120.00043 * 0.02562 * 5 3 2 30 30 H 1.08998 * 110.62707 * 359.97438 * 8 6 5 31 31 H 1.09001 * 110.63178 * 122.85959 * 8 6 5 32 32 H 1.08995 * 110.62667 * 190.31190 * 11 9 8 33 33 H 1.08997 * 110.63179 * 313.33754 * 11 9 8 34 34 H 1.08993 * 110.62889 * 241.51008 * 12 11 9 35 35 H 1.09002 * 110.76054 * 118.54862 * 12 11 9 36 36 H 0.97009 * 119.99478 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 -0.0051 5 7 3.3573 1.6673 0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1988 3.6833 0.6057 8 6 3.9435 3.5919 -1.4467 9 6 5.4604 3.9088 -1.6129 10 1 5.8201 3.9608 -2.6405 11 6 5.7090 5.1714 -0.7340 12 6 5.6110 4.6280 0.7128 13 6 5.3172 3.1108 0.5109 14 1 5.5504 2.4604 1.3539 15 7 6.0738 2.8369 -0.7574 16 6 7.0288 1.8986 -1.0452 17 1 7.3461 1.2003 -0.2848 18 6 7.5891 1.8452 -2.3141 19 7 7.2020 2.6960 -3.2407 20 14 8.8913 0.5648 -2.7068 21 1 9.1479 -0.2658 -1.5029 22 1 8.4151 -0.3020 -3.8145 23 1 10.1468 1.2448 -3.1151 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.9876 0.9300 0.0005 30 1 3.6291 2.8336 -2.1638 31 1 3.3453 4.4963 -1.5586 32 1 6.7007 5.5820 -0.9235 33 1 4.9403 5.9226 -0.9147 34 1 4.7937 5.1097 1.2494 35 1 6.5529 4.7690 1.2431 36 1 7.5934 2.6583 -4.1276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096692240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:29 Heat of formation + Delta-G solvation = -23.421114 kcal Electronic energy + Delta-G solvation = -17757.994950 eV Core-core repulsion = 15049.069555 eV Total energy + Delta-G solvation = -2708.925395 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26771 -39.85819 -35.24634 -34.40582 -33.57752 -30.97693 -30.42426 -29.34185 -26.20233 -25.22832 -22.63808 -21.53284 -20.98711 -20.23962 -18.84286 -17.99982 -17.21728 -16.76313 -16.42019 -15.77639 -15.49264 -14.99238 -14.53636 -14.26663 -13.72394 -13.65484 -13.09658 -12.89802 -12.87413 -12.76924 -12.66753 -12.59475 -12.08827 -12.00553 -11.93944 -11.87645 -11.70593 -11.19886 -10.95422 -10.93238 -10.58262 -9.88992 -8.87063 -7.75388 -5.15452 1.49464 1.50544 1.59532 1.75157 2.41902 2.51150 3.38116 3.45499 3.88042 4.03103 4.08985 4.25051 4.29304 4.29459 4.46155 4.48716 4.62495 4.67732 4.79840 4.83570 4.91624 5.01064 5.08696 5.10098 5.17264 5.19704 5.35328 5.38449 5.53055 5.62580 5.75434 5.90445 6.27279 6.72443 7.06337 7.37956 7.73181 8.59102 9.32370 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.008287 C = 0.006784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.382209 B = 3377.918271 C = 4126.297737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.139 4.139 3 C 0.500 3.500 4 O -0.593 6.593 5 N -0.708 5.708 6 C 0.138 3.862 7 H 0.081 0.919 8 C -0.132 4.132 9 C 0.139 3.861 10 H 0.115 0.885 11 C -0.132 4.132 12 C -0.119 4.119 13 C 0.128 3.872 14 H 0.105 0.895 15 N -0.610 5.610 16 C -0.212 4.212 17 H 0.088 0.912 18 C -0.070 4.070 19 N -0.950 5.950 20 Si 0.975 3.025 21 H -0.264 1.264 22 H -0.299 1.299 23 H -0.300 1.300 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.407 0.593 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 -3.572 8.030 11.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.179 4.179 3 C 0.289 3.711 4 O -0.474 6.474 5 N -0.357 5.357 6 C 0.031 3.969 7 H 0.099 0.901 8 C -0.173 4.173 9 C 0.032 3.968 10 H 0.132 0.868 11 C -0.171 4.171 12 C -0.159 4.159 13 C 0.021 3.979 14 H 0.123 0.877 15 N -0.331 5.331 16 C -0.341 4.341 17 H 0.106 0.894 18 C -0.262 4.262 19 N -0.600 5.600 20 Si 0.805 3.195 21 H -0.188 1.188 22 H -0.226 1.226 23 H -0.228 1.228 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.242 0.758 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.742 -3.093 7.872 11.466 hybrid contribution 1.131 -0.628 -0.801 1.522 sum -6.611 -3.722 7.071 10.371 Atomic orbital electron populations 1.21500 0.92999 1.02582 1.01859 1.21692 0.98532 0.91598 1.06053 1.21516 0.81904 0.93031 0.74664 1.90625 1.56228 1.48256 1.52330 1.46068 1.07016 1.09144 1.73492 1.22412 0.95676 0.82643 0.96137 0.90088 1.23306 0.98646 0.99119 0.96225 1.23586 0.89042 0.86590 0.97548 0.86815 1.22948 0.99785 0.97976 0.96419 1.22828 1.01239 0.95583 0.96229 1.23376 0.88915 0.95781 0.89867 0.87681 1.46721 1.43083 1.35345 1.07967 1.19422 1.11463 1.07273 0.95919 0.89430 1.25452 1.02814 1.01593 0.96343 1.69738 1.46780 1.39917 1.03597 0.85038 0.78348 0.78388 0.77714 1.18827 1.22616 1.22794 0.89491 0.93040 0.93929 0.87856 0.86432 0.75793 0.95049 0.92029 0.94272 0.91247 0.90099 0.92068 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.20 71.98 0.66 -2.13 16 2 C -0.14 -3.06 6.42 29.85 0.19 -2.87 16 3 C 0.50 16.05 7.83 87.66 0.69 16.74 16 4 O -0.59 -23.44 15.70 -3.01 -0.05 -23.49 16 5 N -0.71 -23.32 5.10 -434.82 -2.22 -25.54 16 6 C 0.14 5.02 2.73 46.63 0.13 5.15 16 7 H 0.08 2.91 7.37 -2.38 -0.02 2.89 16 8 C -0.13 -5.52 6.22 32.21 0.20 -5.32 16 9 C 0.14 6.44 4.72 46.23 0.22 6.66 16 10 H 0.11 6.25 5.52 -2.39 -0.01 6.24 16 11 C -0.13 -5.14 6.44 32.21 0.21 -4.93 16 12 C -0.12 -4.04 6.44 32.21 0.21 -3.83 16 13 C 0.13 4.70 5.04 46.26 0.23 4.94 16 14 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 15 N -0.61 -28.49 2.98 -615.21 -1.84 -30.32 16 16 C -0.21 -10.90 10.59 84.03 0.89 -10.01 16 17 H 0.09 4.24 7.83 -2.91 -0.02 4.21 16 18 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 19 N -0.95 -54.92 10.46 21.65 0.23 -54.69 16 20 Si 0.98 44.05 29.55 68.60 2.03 46.08 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 24 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.16 8.10 -2.39 -0.02 1.15 16 26 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 27 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.41 12.60 8.62 -92.71 -0.80 11.80 16 30 H 0.03 1.44 7.98 -2.39 -0.02 1.42 16 31 H 0.06 2.40 7.82 -2.39 -0.02 2.38 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 2.38 7.82 -2.39 -0.02 2.36 16 34 H 0.08 2.30 7.82 -2.39 -0.02 2.28 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.24 13.92 8.31 -92.70 -0.77 13.15 16 Total: -1.00 -64.62 290.38 2.51 -62.11 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.27 Total: 24.76 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 4.09 Total: 1.09 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -3.83 Total: -110.56 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -64.62 2.51 -62.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096692240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.693 kcal (2) G-P(sol) polarization free energy of solvation -64.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds