Wall clock time and date at job start Sun Mar 29 2020 22:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.46955 * 2 1 4 4 C 1.50701 * 109.47141 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99914 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00080 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99975 * 180.02562 * 6 4 3 8 8 H 1.09003 * 115.49040 * 9.61405 * 7 6 4 9 9 C 1.57271 * 116.89822 * 223.09583 * 7 6 4 10 10 H 1.09006 * 120.67576 * 3.42902 * 9 7 6 11 11 C 1.54386 * 118.10824 * 161.54142 * 9 7 6 12 12 N 1.48146 * 104.71862 * 86.05466 * 11 9 7 13 13 C 1.36934 * 127.83756 * 140.35768 * 12 11 9 14 14 H 1.07999 * 119.99882 * 195.61312 * 13 12 11 15 15 C 1.38816 * 120.00098 * 15.61148 * 13 12 11 16 16 N 1.31612 * 120.00108 * 9.10877 * 15 13 12 17 17 Si 1.86803 * 119.99782 * 189.10834 * 15 13 12 18 18 H 1.48496 * 109.47148 * 90.00143 * 17 15 13 19 19 H 1.48501 * 109.46707 * 210.00271 * 17 15 13 20 20 H 1.48502 * 109.47337 * 329.99715 * 17 15 13 21 21 C 1.48143 * 104.32403 * 320.35279 * 12 11 9 22 22 C 1.52994 * 117.44266 * 155.00215 * 7 6 4 23 23 H 1.08997 * 119.54403 * 354.27965 * 22 7 6 24 24 H 1.08998 * 109.46480 * 60.00178 * 1 2 3 25 25 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47214 * 300.00012 * 1 2 3 27 27 H 1.09002 * 109.46994 * 239.99662 * 2 1 3 28 28 H 1.08999 * 109.47005 * 119.99801 * 2 1 3 29 29 H 1.09002 * 109.47545 * 59.99999 * 3 2 1 30 30 H 1.09005 * 109.47449 * 299.99959 * 3 2 1 31 31 H 0.96999 * 119.99987 * 0.02562 * 6 4 3 32 32 H 1.09003 * 110.40937 * 327.20591 * 11 9 7 33 33 H 1.09006 * 110.40453 * 204.89346 * 11 9 7 34 34 H 0.96998 * 120.00174 * 179.97438 * 16 15 13 35 35 H 1.08994 * 110.40818 * 158.37311 * 21 12 11 36 36 H 1.09000 * 110.40483 * 280.80198 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1535 0.3921 0.0006 6 7 4.2209 2.6097 0.0002 7 6 5.6859 2.6097 0.0003 8 1 6.1550 1.6396 -0.1637 9 6 6.3974 3.6342 0.9582 10 1 5.8143 4.2675 1.6270 11 6 7.8784 3.3868 1.3171 12 7 8.6431 4.0216 0.2185 13 6 9.8035 4.7429 0.3103 14 1 10.1232 5.3589 -0.5172 15 6 10.5687 4.6824 1.4668 16 7 10.2806 3.8014 2.4012 17 14 12.0075 5.8513 1.6970 18 1 11.5373 7.0887 2.3700 19 1 13.0472 5.1980 2.5322 20 1 12.5820 6.1963 0.3717 21 6 7.8677 3.6990 -1.0019 22 6 6.3910 3.8401 -0.5739 23 1 5.8014 4.6264 -1.0452 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7359 3.4497 -0.0001 32 1 8.0864 2.3175 1.3566 33 1 8.1220 3.8560 2.2703 34 1 10.8155 3.7589 3.2092 35 1 8.1017 4.4051 -1.7986 36 1 8.0741 2.6786 -1.3246 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113781828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:13 Heat of formation + Delta-G solvation = 9.519020 kcal Electronic energy + Delta-G solvation = -16598.225519 eV Core-core repulsion = 13890.728515 eV Total energy + Delta-G solvation = -2707.497004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76191 -38.22196 -34.61944 -34.30320 -32.59317 -30.27521 -28.08134 -27.13562 -25.52808 -22.64730 -21.35958 -20.46954 -19.94454 -19.21254 -16.98393 -16.80460 -16.18820 -15.89456 -14.74073 -14.35191 -14.12156 -13.64474 -13.37914 -13.11573 -12.74648 -12.34147 -12.19893 -11.95385 -11.50233 -11.40863 -11.33696 -10.98973 -10.90881 -10.83174 -10.38826 -10.18525 -10.15356 -9.76017 -9.71260 -9.17514 -8.73971 -8.22494 -6.86715 -5.79260 -3.14002 2.67974 3.17752 3.38666 3.43531 3.45793 4.26319 4.46076 4.65625 4.73746 4.83562 5.11375 5.24871 5.29365 5.37184 5.39825 5.42464 5.53916 5.59525 5.82113 5.84142 5.90003 5.97995 6.14947 6.19360 6.27650 6.53396 6.68838 6.82956 6.89893 7.37537 7.54692 7.62118 7.72125 8.20878 8.33496 9.11054 9.73726 10.50974 11.34968 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.073583 B = 0.004131 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.429155 B = 6777.047215 C = 6911.305938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.511 3.489 5 O -0.540 6.540 6 N -0.700 5.700 7 C 0.093 3.907 8 H 0.133 0.867 9 C -0.182 4.182 10 H 0.103 0.897 11 C 0.184 3.816 12 N -0.593 5.593 13 C -0.229 4.229 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.914 5.914 17 Si 0.914 3.086 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.155 3.845 22 C -0.180 4.180 23 H 0.100 0.900 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.398 0.602 32 H 0.026 0.974 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.051 0.949 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.588 -1.952 -4.366 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.180 4.180 4 C 0.298 3.702 5 O -0.417 6.417 6 N -0.348 5.348 7 C -0.013 4.013 8 H 0.150 0.850 9 C -0.203 4.203 10 H 0.121 0.879 11 C 0.058 3.942 12 N -0.317 5.317 13 C -0.357 4.357 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.560 5.560 17 Si 0.744 3.256 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.028 3.972 22 C -0.201 4.201 23 H 0.118 0.882 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.232 0.768 32 H 0.044 0.956 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -16.907 -2.664 -4.218 17.627 hybrid contribution 0.412 1.224 0.175 1.304 sum -16.494 -1.440 -4.043 17.044 Atomic orbital electron populations 1.21796 0.95615 1.01884 1.01682 1.21281 0.95065 0.94777 1.03704 1.21717 0.91841 1.00179 1.04240 1.20733 0.90134 0.83592 0.75737 1.90708 1.70487 1.31269 1.49207 1.45434 1.06447 1.08473 1.74464 1.22552 0.78414 0.96363 1.03971 0.84953 1.25463 1.00211 1.01972 0.92683 0.87864 1.21053 0.82647 0.96176 0.94325 1.45184 1.24802 1.61399 1.00299 1.19002 0.96592 1.18665 1.01403 0.90509 1.24914 0.98609 0.98748 0.97999 1.69900 1.41395 1.35408 1.09327 0.86097 0.81668 0.80134 0.77717 1.21516 1.21630 1.20530 1.21132 0.87200 0.97838 0.91049 1.24353 0.98698 0.98826 0.98235 0.88160 0.92767 0.92459 0.92716 0.91212 0.91139 0.88985 0.89049 0.76828 0.95639 0.89116 0.93509 0.93004 0.95531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.71 16 2 C -0.11 -1.05 5.22 -26.73 -0.14 -1.19 16 3 C -0.14 -1.27 5.70 -27.89 -0.16 -1.43 16 4 C 0.51 7.08 7.83 -10.98 -0.09 6.99 16 5 O -0.54 -9.89 15.55 5.55 0.09 -9.80 16 6 N -0.70 -9.36 5.57 -51.56 -0.29 -9.65 16 7 C 0.09 1.60 6.19 -65.61 -0.41 1.19 16 8 H 0.13 2.59 7.40 -51.93 -0.38 2.21 16 9 C -0.18 -3.51 7.26 -86.74 -0.63 -4.14 16 10 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 11 C 0.18 4.52 5.72 -2.41 -0.01 4.50 16 12 N -0.59 -15.40 3.38 -168.86 -0.57 -15.97 16 13 C -0.23 -6.41 10.35 -15.06 -0.16 -6.57 16 14 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 15 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 16 N -0.91 -27.03 10.86 55.49 0.60 -26.43 16 17 Si 0.91 22.00 29.56 -169.99 -5.03 16.97 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.15 3.29 7.03 -2.41 -0.02 3.28 16 22 C -0.18 -3.21 6.91 -89.06 -0.62 -3.82 16 23 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.40 4.05 8.83 -40.82 -0.36 3.69 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 2.47 6.51 -51.93 -0.34 2.13 16 34 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 300.29 15.07 4.53 4.53 Total: -1.00 -32.31 300.29 -8.32 -40.63 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.70 Total: 1.87 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.95 Total: -2.14 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.25 Total: -52.05 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.31 -8.32 -40.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113781828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.146 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds