Wall clock time and date at job start Sun Mar 29 2020 22:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.46955 * 2 1 4 4 C 1.50701 * 109.47141 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99914 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00080 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99975 * 180.02562 * 6 4 3 8 8 H 1.09003 * 115.49040 * 9.61405 * 7 6 4 9 9 C 1.57271 * 116.89822 * 223.09583 * 7 6 4 10 10 H 1.09006 * 120.67576 * 3.42902 * 9 7 6 11 11 C 1.54386 * 118.10824 * 161.54142 * 9 7 6 12 12 N 1.48146 * 104.71862 * 86.05466 * 11 9 7 13 13 C 1.36934 * 127.83756 * 140.35768 * 12 11 9 14 14 H 1.07999 * 119.99882 * 195.61312 * 13 12 11 15 15 C 1.38816 * 120.00098 * 15.61148 * 13 12 11 16 16 N 1.31612 * 120.00108 * 9.10877 * 15 13 12 17 17 Si 1.86803 * 119.99782 * 189.10834 * 15 13 12 18 18 H 1.48496 * 109.47148 * 90.00143 * 17 15 13 19 19 H 1.48501 * 109.46707 * 210.00271 * 17 15 13 20 20 H 1.48502 * 109.47337 * 329.99715 * 17 15 13 21 21 C 1.48143 * 104.32403 * 320.35279 * 12 11 9 22 22 C 1.52994 * 117.44266 * 155.00215 * 7 6 4 23 23 H 1.08997 * 119.54403 * 354.27965 * 22 7 6 24 24 H 1.08998 * 109.46480 * 60.00178 * 1 2 3 25 25 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47214 * 300.00012 * 1 2 3 27 27 H 1.09002 * 109.46994 * 239.99662 * 2 1 3 28 28 H 1.08999 * 109.47005 * 119.99801 * 2 1 3 29 29 H 1.09002 * 109.47545 * 59.99999 * 3 2 1 30 30 H 1.09005 * 109.47449 * 299.99959 * 3 2 1 31 31 H 0.96999 * 119.99987 * 0.02562 * 6 4 3 32 32 H 1.09003 * 110.40937 * 327.20591 * 11 9 7 33 33 H 1.09006 * 110.40453 * 204.89346 * 11 9 7 34 34 H 0.96998 * 120.00174 * 179.97438 * 16 15 13 35 35 H 1.08994 * 110.40818 * 158.37311 * 21 12 11 36 36 H 1.09000 * 110.40483 * 280.80198 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1535 0.3921 0.0006 6 7 4.2209 2.6097 0.0002 7 6 5.6859 2.6097 0.0003 8 1 6.1550 1.6396 -0.1637 9 6 6.3974 3.6342 0.9582 10 1 5.8143 4.2675 1.6270 11 6 7.8784 3.3868 1.3171 12 7 8.6431 4.0216 0.2185 13 6 9.8035 4.7429 0.3103 14 1 10.1232 5.3589 -0.5172 15 6 10.5687 4.6824 1.4668 16 7 10.2806 3.8014 2.4012 17 14 12.0075 5.8513 1.6970 18 1 11.5373 7.0887 2.3700 19 1 13.0472 5.1980 2.5322 20 1 12.5820 6.1963 0.3717 21 6 7.8677 3.6990 -1.0019 22 6 6.3910 3.8401 -0.5739 23 1 5.8014 4.6264 -1.0452 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7359 3.4497 -0.0001 32 1 8.0864 2.3175 1.3566 33 1 8.1220 3.8560 2.2703 34 1 10.8155 3.7589 3.2092 35 1 8.1017 4.4051 -1.7986 36 1 8.0741 2.6786 -1.3246 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113781828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:12 Heat of formation + Delta-G solvation = -12.264557 kcal Electronic energy + Delta-G solvation = -16599.170126 eV Core-core repulsion = 13890.728515 eV Total energy + Delta-G solvation = -2708.441611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02798 -39.75229 -36.07561 -35.23675 -34.30431 -32.08775 -29.03605 -28.87112 -27.39654 -23.96198 -22.61007 -21.94554 -21.17377 -20.81286 -18.88006 -18.01818 -17.57193 -16.78420 -16.71698 -15.73079 -15.32801 -15.06486 -14.88394 -14.64853 -13.94982 -13.80373 -13.37032 -13.23104 -12.93935 -12.84351 -12.72684 -12.60727 -12.13333 -12.03938 -11.99888 -11.87927 -11.66454 -11.58552 -10.98752 -10.81742 -10.70382 -9.62502 -8.94637 -7.92966 -5.30743 1.46222 1.48449 1.57144 1.57662 2.02620 2.47863 2.79267 3.27425 3.53444 3.76654 3.80499 3.93480 4.04044 4.12132 4.16154 4.36964 4.50991 4.58672 4.74840 4.78034 4.82916 4.89696 4.96996 4.98044 5.26478 5.27885 5.31068 5.41538 5.44212 5.49248 5.56564 5.62665 6.14702 6.57346 6.98146 7.28330 7.65448 8.44051 9.20924 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.073583 B = 0.004131 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.429155 B = 6777.047215 C = 6911.305938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.128 4.128 4 C 0.506 3.494 5 O -0.592 6.592 6 N -0.685 5.685 7 C 0.113 3.887 8 H 0.103 0.897 9 C -0.189 4.189 10 H 0.125 0.875 11 C 0.188 3.812 12 N -0.617 5.617 13 C -0.243 4.243 14 H 0.085 0.915 15 C -0.064 4.064 16 N -0.949 5.949 17 Si 0.984 3.016 18 H -0.283 1.283 19 H -0.296 1.296 20 H -0.266 1.266 21 C 0.146 3.854 22 C -0.155 4.155 23 H 0.140 0.860 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.420 0.580 32 H -0.009 1.009 33 H 0.057 0.943 34 H 0.250 0.750 35 H 0.067 0.933 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.921 -0.147 -5.476 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.167 4.167 4 C 0.296 3.704 5 O -0.472 6.472 6 N -0.335 5.335 7 C 0.006 3.994 8 H 0.121 0.879 9 C -0.210 4.210 10 H 0.143 0.857 11 C 0.062 3.938 12 N -0.342 5.342 13 C -0.372 4.372 14 H 0.103 0.897 15 C -0.258 4.258 16 N -0.597 5.597 17 Si 0.812 3.188 18 H -0.209 1.209 19 H -0.222 1.222 20 H -0.190 1.190 21 C 0.020 3.980 22 C -0.176 4.176 23 H 0.157 0.843 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.257 0.743 32 H 0.009 0.991 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -19.295 -0.827 -5.362 20.043 hybrid contribution 1.132 0.568 0.478 1.354 sum -18.163 -0.260 -4.884 18.810 Atomic orbital electron populations 1.21748 0.93294 1.02392 1.02896 1.21285 0.96987 0.94924 1.01909 1.21775 0.87518 1.00364 1.07040 1.21711 0.92122 0.82589 0.74027 1.90701 1.71904 1.33193 1.51426 1.45268 1.04456 1.09758 1.73979 1.22065 0.80745 0.94678 1.01957 0.87868 1.25148 0.97498 1.04206 0.94153 0.85685 1.20765 0.86374 0.93613 0.93057 1.45498 1.25064 1.61336 1.02259 1.19436 0.97409 1.18676 1.01632 0.89734 1.25816 1.01608 1.00521 0.97848 1.70114 1.42600 1.37293 1.09699 0.84998 0.78081 0.77810 0.77933 1.20930 1.22216 1.19034 1.21297 0.89034 0.97615 0.90034 1.24251 0.96949 0.99864 0.96511 0.84275 0.91375 0.92455 0.91582 0.92950 0.93255 0.86202 0.85817 0.74260 0.99125 0.92446 0.94099 0.91488 0.96493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.11 -1.96 5.22 30.59 0.16 -1.80 16 3 C -0.13 -1.88 5.70 29.85 0.17 -1.71 16 4 C 0.51 13.05 7.83 87.66 0.69 13.74 16 5 O -0.59 -21.80 15.55 -3.05 -0.05 -21.85 16 6 N -0.68 -16.38 5.57 -435.43 -2.42 -18.81 16 7 C 0.11 3.76 6.19 46.49 0.29 4.05 16 8 H 0.10 4.14 7.40 -2.39 -0.02 4.13 16 9 C -0.19 -7.13 7.26 -8.28 -0.06 -7.19 16 10 H 0.13 4.20 8.14 -2.38 -0.02 4.18 16 11 C 0.19 9.60 5.72 86.53 0.49 10.10 16 12 N -0.62 -32.62 3.38 -688.15 -2.33 -34.94 16 13 C -0.24 -13.78 10.35 84.03 0.87 -12.91 16 14 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 15 C -0.06 -3.70 5.40 84.86 0.46 -3.24 16 16 N -0.95 -58.28 10.86 21.65 0.24 -58.05 16 17 Si 0.98 45.75 29.56 68.60 2.03 47.78 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 C 0.15 6.14 7.03 86.54 0.61 6.75 16 22 C -0.16 -5.17 6.91 -9.78 -0.07 -5.24 16 23 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 24 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 28 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 29 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.42 6.62 8.83 -92.71 -0.82 5.81 16 32 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 33 H 0.06 3.28 6.51 -2.38 -0.02 3.27 16 34 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -73.94 300.29 2.03 -71.91 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.24 Total: 12.35 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 4.32 Total: 1.60 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -4.52 Total: -111.80 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -73.94 2.03 -71.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113781828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.646 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds