Wall clock time and date at job start Sun Mar 29 2020 22:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47224 * 2 1 4 4 C 1.52995 * 109.47413 * 119.99864 * 2 1 3 5 5 C 1.50698 * 109.47256 * 64.99927 * 4 2 1 6 6 N 1.30276 * 126.28250 * 90.02168 * 5 4 2 7 7 N 1.28674 * 109.37873 * 179.97438 * 6 5 4 8 8 C 1.30272 * 109.38187 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.28028 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47333 * 90.02341 * 9 8 7 11 11 C 1.53000 * 109.47390 * 179.97438 * 10 9 8 12 12 C 1.50691 * 109.46990 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00498 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99678 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99919 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99671 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47355 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46538 * 120.00532 * 16 14 12 19 19 H 1.48500 * 109.47111 * 240.00152 * 16 14 12 20 20 O 1.34364 * 107.43764 * 359.97438 * 8 7 6 21 21 H 1.09003 * 109.46617 * 300.00239 * 1 2 3 22 22 H 1.08997 * 109.47167 * 60.00037 * 1 2 3 23 23 H 1.08995 * 109.47166 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46924 * 240.00203 * 2 1 3 25 25 H 1.09000 * 109.47064 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.46845 * 300.00032 * 3 2 1 27 27 H 1.08997 * 109.47100 * 59.99780 * 3 2 1 28 28 H 1.09002 * 109.47602 * 305.00070 * 4 2 1 29 29 H 1.09002 * 109.47598 * 185.00261 * 4 2 1 30 30 H 1.08995 * 109.47102 * 210.02300 * 9 8 7 31 31 H 1.09003 * 109.47108 * 330.02056 * 9 8 7 32 32 H 1.09004 * 109.46778 * 299.99900 * 10 9 8 33 33 H 1.08998 * 109.46817 * 59.99962 * 10 9 8 34 34 H 1.09000 * 109.47046 * 300.00501 * 11 10 9 35 35 H 1.09003 * 109.47016 * 59.99737 * 11 10 9 36 36 H 0.96998 * 119.99738 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 -2.1732 1.1889 6 7 2.3350 -3.1418 0.6617 7 7 1.6898 -4.2478 0.7898 8 6 0.5625 -4.0222 1.4026 9 6 -0.4848 -5.0487 1.7496 10 6 -0.1949 -5.6240 3.1374 11 6 -1.2586 -6.6657 3.4901 12 6 -0.9726 -7.2327 4.8566 13 1 -0.1181 -6.8847 5.4178 14 6 -1.8028 -8.1953 5.3911 15 7 -2.8437 -8.6188 4.7080 16 14 -1.4479 -8.8987 7.0849 17 1 -0.2275 -8.2605 7.6402 18 1 -2.5992 -8.6299 7.9835 19 1 -1.2355 -10.3645 6.9776 20 8 0.5055 -2.7065 1.6693 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6055 -0.2617 2.1370 29 1 3.1264 -0.6442 1.2952 30 1 -1.4682 -4.5788 1.7493 31 1 -0.4653 -5.8512 1.0123 32 1 0.7886 -6.0939 3.1377 33 1 -0.2144 -4.8214 3.8747 34 1 -2.2419 -6.1954 3.4898 35 1 -1.2396 -7.4683 2.7528 36 1 -3.4279 -9.2956 5.0842 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118367258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:58 Heat of formation + Delta-G solvation = -3.632598 kcal Electronic energy + Delta-G solvation = -16332.431673 eV Core-core repulsion = 13624.364372 eV Total energy + Delta-G solvation = -2708.067301 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.03601 -36.98986 -35.94539 -35.06027 -32.71834 -31.09454 -28.57458 -27.50186 -26.66041 -24.09821 -22.74605 -21.92279 -20.50775 -20.35769 -17.13275 -17.05923 -16.34008 -15.56901 -15.15783 -14.59726 -14.32787 -14.16271 -14.13887 -13.07374 -12.65642 -12.52550 -12.34258 -12.23735 -12.08170 -11.72012 -11.63373 -11.49028 -11.33077 -11.11116 -10.92048 -10.88229 -10.73028 -10.55511 -9.84548 -9.64534 -9.26254 -9.01864 -8.39373 -6.04338 -4.06762 1.33665 2.42205 2.57052 3.29633 3.37271 3.41740 3.91240 4.39336 4.43685 4.45825 4.60247 4.79387 4.98733 5.17285 5.31261 5.31831 5.32673 5.40242 5.51596 5.55177 5.62998 5.65241 5.66826 5.74794 5.82444 5.92441 6.00166 6.10289 6.49377 6.63539 6.94248 7.59665 7.71177 7.94283 8.36007 8.50786 8.99624 9.57690 11.07034 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049998 B = 0.003776 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.883181 B = 7414.398439 C = 7423.033961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.018 4.018 5 C 0.148 3.852 6 N -0.289 5.289 7 N -0.298 5.298 8 C 0.186 3.814 9 C -0.029 4.029 10 C -0.107 4.107 11 C 0.023 3.977 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 O -0.224 6.224 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.020 0.980 35 H 0.022 0.978 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.338 18.380 -8.539 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.056 4.056 5 C -0.063 4.063 6 N -0.136 5.136 7 N -0.144 5.144 8 C -0.024 4.024 9 C -0.068 4.068 10 C -0.145 4.145 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 O -0.103 6.103 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.156 17.622 -9.133 21.099 hybrid contribution -0.820 0.080 1.538 1.744 sum 6.336 17.702 -7.595 20.278 Atomic orbital electron populations 1.21914 0.94570 1.02173 1.02287 1.21170 0.96550 0.96499 0.97182 1.21812 1.01280 0.94776 1.02384 1.20281 1.02849 0.81917 1.00592 1.27791 0.82404 0.99425 0.96670 1.74319 1.25659 0.94850 1.18761 1.74413 1.03839 1.18586 1.17562 1.28602 0.97825 0.80996 0.94961 1.20611 0.92537 0.91966 1.01691 1.21744 1.02088 0.99744 0.90950 1.19109 0.92845 0.92689 0.96802 1.21238 1.11167 1.21694 1.01888 0.92578 1.25016 0.95082 0.96574 0.97740 1.69964 1.15315 1.30433 1.37669 0.86521 0.78247 0.78925 0.84250 1.19729 1.20986 1.20931 1.84813 1.39689 1.23027 1.62793 0.92093 0.92163 0.92804 0.90253 0.92170 0.92060 0.92220 0.88588 0.87335 0.88822 0.87319 0.92254 0.92815 0.96179 0.96011 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.01 37.16 0.33 -0.96 16 2 C -0.09 -0.75 2.91 -90.62 -0.26 -1.02 16 3 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 4 C -0.02 -0.16 5.32 -27.89 -0.15 -0.31 16 5 C 0.15 2.10 6.89 -12.94 -0.09 2.01 16 6 N -0.29 -4.93 12.22 32.55 0.40 -4.53 16 7 N -0.30 -5.54 12.22 32.55 0.40 -5.14 16 8 C 0.19 3.20 7.73 -12.94 -0.10 3.10 16 9 C -0.03 -0.49 5.84 -27.88 -0.16 -0.65 16 10 C -0.11 -2.16 5.13 -26.73 -0.14 -2.30 16 11 C 0.02 0.56 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 16 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 O -0.22 -3.52 10.31 5.37 0.06 -3.46 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.57 6.92 -51.93 -0.36 0.22 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 307.43 15.07 4.63 4.63 Total: -1.00 -31.74 307.43 -5.39 -37.14 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -5.82 Total: -5.79 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -0.77 Total: -13.62 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 1.53 Total: -35.45 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: 0.06 Total: -3.46 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.74 -5.39 -37.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118367258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.506 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds