Wall clock time and date at job start Sun Mar 29 2020 22:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47224 * 2 1 4 4 C 1.52995 * 109.47413 * 119.99864 * 2 1 3 5 5 C 1.50698 * 109.47256 * 64.99927 * 4 2 1 6 6 N 1.30276 * 126.28250 * 90.02168 * 5 4 2 7 7 N 1.28674 * 109.37873 * 179.97438 * 6 5 4 8 8 C 1.30272 * 109.38187 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.28028 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47333 * 90.02341 * 9 8 7 11 11 C 1.53000 * 109.47390 * 179.97438 * 10 9 8 12 12 C 1.50691 * 109.46990 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00498 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99678 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99919 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99671 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47355 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46538 * 120.00532 * 16 14 12 19 19 H 1.48500 * 109.47111 * 240.00152 * 16 14 12 20 20 O 1.34364 * 107.43764 * 359.97438 * 8 7 6 21 21 H 1.09003 * 109.46617 * 300.00239 * 1 2 3 22 22 H 1.08997 * 109.47167 * 60.00037 * 1 2 3 23 23 H 1.08995 * 109.47166 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46924 * 240.00203 * 2 1 3 25 25 H 1.09000 * 109.47064 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.46845 * 300.00032 * 3 2 1 27 27 H 1.08997 * 109.47100 * 59.99780 * 3 2 1 28 28 H 1.09002 * 109.47602 * 305.00070 * 4 2 1 29 29 H 1.09002 * 109.47598 * 185.00261 * 4 2 1 30 30 H 1.08995 * 109.47102 * 210.02300 * 9 8 7 31 31 H 1.09003 * 109.47108 * 330.02056 * 9 8 7 32 32 H 1.09004 * 109.46778 * 299.99900 * 10 9 8 33 33 H 1.08998 * 109.46817 * 59.99962 * 10 9 8 34 34 H 1.09000 * 109.47046 * 300.00501 * 11 10 9 35 35 H 1.09003 * 109.47016 * 59.99737 * 11 10 9 36 36 H 0.96998 * 119.99738 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 -2.1732 1.1889 6 7 2.3350 -3.1418 0.6617 7 7 1.6898 -4.2478 0.7898 8 6 0.5625 -4.0222 1.4026 9 6 -0.4848 -5.0487 1.7496 10 6 -0.1949 -5.6240 3.1374 11 6 -1.2586 -6.6657 3.4901 12 6 -0.9726 -7.2327 4.8566 13 1 -0.1181 -6.8847 5.4178 14 6 -1.8028 -8.1953 5.3911 15 7 -2.8437 -8.6188 4.7080 16 14 -1.4479 -8.8987 7.0849 17 1 -0.2275 -8.2605 7.6402 18 1 -2.5992 -8.6299 7.9835 19 1 -1.2355 -10.3645 6.9776 20 8 0.5055 -2.7065 1.6693 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6055 -0.2617 2.1370 29 1 3.1264 -0.6442 1.2952 30 1 -1.4682 -4.5788 1.7493 31 1 -0.4653 -5.8512 1.0123 32 1 0.7886 -6.0939 3.1377 33 1 -0.2144 -4.8214 3.8747 34 1 -2.2419 -6.1954 3.4898 35 1 -1.2396 -7.4683 2.7528 36 1 -3.4279 -9.2956 5.0842 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118367258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:58 Heat of formation + Delta-G solvation = -25.810165 kcal Electronic energy + Delta-G solvation = -16333.393364 eV Core-core repulsion = 13624.364372 eV Total energy + Delta-G solvation = -2709.028992 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.29158 -37.72862 -37.21918 -36.71169 -34.61389 -32.47103 -30.00705 -28.08141 -27.97094 -25.87463 -23.89334 -23.38679 -22.08668 -21.19150 -18.62734 -18.36289 -18.07768 -16.60412 -16.56648 -16.08951 -15.66422 -15.39014 -15.00669 -14.36929 -13.99332 -13.84040 -13.51854 -13.34557 -13.15825 -12.96803 -12.84304 -12.76872 -12.72959 -12.46930 -12.26011 -12.03268 -11.93227 -11.66539 -11.61628 -11.49796 -11.26428 -10.55719 -10.43907 -8.20970 -6.31088 0.11803 1.24098 1.29824 1.40036 1.41069 1.53705 2.40937 2.80571 3.12937 3.37637 3.73862 3.80561 4.00871 4.07302 4.15741 4.20726 4.28701 4.40740 4.59694 4.68406 4.71529 4.77563 4.84272 4.89144 4.94707 4.95332 5.04632 5.12513 5.20896 5.35372 5.43930 5.49370 5.69839 5.83183 6.23259 6.84609 7.23911 7.37830 8.90809 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049998 B = 0.003776 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.883181 B = 7414.398439 C = 7423.033961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.021 4.021 5 C 0.169 3.831 6 N -0.323 5.323 7 N -0.323 5.323 8 C 0.179 3.821 9 C -0.019 4.019 10 C -0.091 4.091 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.056 0.944 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.278 1.278 20 O -0.226 6.226 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.026 0.974 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.007 0.993 35 H 0.003 0.997 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.954 20.106 -7.886 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 C -0.197 4.197 4 C -0.059 4.059 5 C -0.042 4.042 6 N -0.168 5.168 7 N -0.169 5.169 8 C -0.032 4.032 9 C -0.057 4.057 10 C -0.130 4.130 11 C -0.011 4.011 12 C -0.583 4.583 13 H 0.074 0.926 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.204 1.204 20 O -0.106 6.106 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.021 0.979 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.792 19.360 -8.493 22.531 hybrid contribution -1.001 -0.373 1.293 1.677 sum 6.791 18.986 -7.200 21.411 Atomic orbital electron populations 1.21936 0.95046 1.00694 1.03344 1.21147 0.96080 0.97795 0.95910 1.21779 1.01827 0.92855 1.03235 1.20723 1.04210 0.78823 1.02143 1.28836 0.80918 1.00712 0.93755 1.74267 1.26592 0.95167 1.20805 1.74345 1.04482 1.19816 1.18243 1.28431 0.97588 0.81636 0.95565 1.20413 0.93404 0.92346 0.99556 1.21438 0.99839 0.98446 0.93249 1.18988 0.93626 0.93195 0.95285 1.21677 1.11239 1.22147 1.03278 0.92613 1.25906 0.94840 0.96950 1.01841 1.70072 1.16242 1.31064 1.39552 0.85444 0.78408 0.78148 0.79332 1.18965 1.20172 1.20385 1.84831 1.40389 1.22460 1.62926 0.91094 0.91161 0.95447 0.91553 0.91306 0.91480 0.91137 0.86398 0.85470 0.86990 0.86680 0.93184 0.92686 0.97508 0.97868 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.01 71.98 0.65 -1.70 16 2 C -0.09 -1.24 2.91 -10.79 -0.03 -1.27 16 3 C -0.14 -1.18 9.19 71.98 0.66 -0.51 16 4 C -0.02 -0.33 5.32 29.85 0.16 -0.17 16 5 C 0.17 4.58 6.89 88.34 0.61 5.19 16 6 N -0.32 -10.88 12.22 -165.50 -2.02 -12.90 16 7 N -0.32 -12.03 12.22 -165.50 -2.02 -14.05 16 8 C 0.18 6.08 7.73 88.34 0.68 6.77 16 9 C -0.02 -0.62 5.84 29.85 0.17 -0.45 16 10 C -0.09 -3.70 5.13 30.59 0.16 -3.55 16 11 C 0.03 1.33 4.97 29.85 0.15 1.48 16 12 C -0.55 -30.82 9.11 25.60 0.23 -30.59 16 13 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 14 C 0.00 0.16 5.46 84.66 0.46 0.62 16 15 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 16 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 O -0.23 -6.91 10.31 -3.71 -0.04 -6.95 16 21 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.03 0.56 6.92 -2.39 -0.02 0.54 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -68.21 307.43 3.17 -65.04 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.04 Total: 2.15 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 3.90 Total: -24.18 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -3.76 Total: -82.21 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.04 Total: -6.95 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.21 3.17 -65.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118367258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.232 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds