Wall clock time and date at job start Sun Mar 29 2020 22:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47101 * 120.00315 * 353.10530 * 3 2 1 5 5 O 1.21612 * 120.00033 * 353.77118 * 4 3 2 6 6 N 1.34782 * 119.99782 * 173.49023 * 4 3 2 7 7 C 1.46499 * 119.99532 * 180.27933 * 6 4 3 8 8 C 1.53001 * 109.46569 * 180.02562 * 7 6 4 9 9 N 1.46507 * 109.46774 * 180.02562 * 8 7 6 10 10 C 1.36935 * 119.99866 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99834 * 359.97438 * 10 9 8 12 12 C 1.38808 * 120.00031 * 179.97438 * 10 9 8 13 13 N 1.31622 * 120.00199 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00064 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47007 * 60.00411 * 14 12 10 16 16 H 1.48498 * 109.46966 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46949 * 300.00216 * 14 12 10 18 18 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 19 19 C 1.53004 * 117.49810 * 8.74040 * 18 2 1 20 20 C 1.53002 * 117.49909 * 300.08674 * 18 2 1 21 21 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 22 22 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 23 23 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 24 24 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 25 25 H 0.96999 * 120.00064 * 0.27886 * 6 4 3 26 26 H 1.09000 * 109.47348 * 300.00042 * 7 6 4 27 27 H 1.08994 * 109.47665 * 60.00431 * 7 6 4 28 28 H 1.09001 * 109.47156 * 299.99362 * 8 7 6 29 29 H 1.08992 * 109.47800 * 59.99759 * 8 7 6 30 30 H 0.96999 * 120.00199 * 359.97438 * 9 8 7 31 31 H 0.96998 * 120.00057 * 179.97438 * 13 12 10 32 32 H 1.09000 * 115.55245 * 154.41153 * 18 2 1 33 33 H 1.08997 * 117.49936 * 0.02562 * 19 18 2 34 34 H 1.09006 * 117.49930 * 145.02050 * 19 18 2 35 35 H 1.09004 * 117.49766 * 214.98081 * 20 18 2 36 36 H 1.09000 * 117.49661 * 359.96947 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1529 5 8 0.2521 2.4136 -0.3924 6 7 2.0980 3.5926 -0.0220 7 6 1.3721 4.8567 -0.1682 8 6 2.3400 6.0257 0.0252 9 7 1.6141 7.2899 -0.1205 10 6 2.2781 8.4800 0.0127 11 1 3.3370 8.4867 0.2255 12 6 1.5904 9.6778 -0.1258 13 7 0.2999 9.6697 -0.3846 14 14 2.4962 11.3014 0.0565 15 1 3.5719 11.3854 -0.9638 16 1 1.5432 12.4240 -0.1348 17 1 3.0933 11.3854 1.4136 18 6 2.2605 -1.3050 -0.0006 19 6 1.4521 -2.5874 -0.2074 20 6 2.0246 -2.2575 1.1733 21 1 -0.3634 0.0979 -1.0229 22 1 -0.3634 -0.9349 0.4268 23 1 -0.3633 0.8370 0.5964 24 1 3.2460 1.1552 0.1122 25 1 3.0490 3.5986 0.1691 26 1 0.9327 4.9102 -1.1643 27 1 0.5822 4.9109 0.5808 28 1 2.7798 5.9724 1.0211 29 1 3.1298 5.9715 -0.7240 30 1 0.6630 7.2839 -0.3112 31 1 -0.1807 10.5067 -0.4811 32 1 3.2637 -1.2685 -0.4253 33 1 0.3753 -2.4872 -0.3434 34 1 1.9236 -3.3948 -0.7679 35 1 2.8725 -2.8478 1.5207 36 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124217580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:48 Heat of formation + Delta-G solvation = 11.199644 kcal Electronic energy + Delta-G solvation = -15964.816416 eV Core-core repulsion = 13257.392289 eV Total energy + Delta-G solvation = -2707.424127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.77380 -38.13073 -35.70797 -33.82533 -33.22135 -31.22213 -28.52576 -27.09381 -24.46816 -23.19344 -22.70247 -21.44205 -20.44785 -18.63645 -17.23751 -16.89830 -16.31079 -15.33446 -15.14613 -14.74932 -14.50819 -13.94471 -13.54310 -13.23170 -13.07952 -12.90235 -12.73585 -12.14228 -11.79356 -11.55400 -11.34002 -11.18142 -11.07935 -10.80334 -10.78390 -10.75512 -10.13347 -9.78722 -9.44838 -9.14345 -8.92598 -8.65310 -6.97991 -5.78184 -3.08889 1.26194 3.31758 3.38045 3.43713 3.48261 3.49699 3.63598 4.31230 4.51444 4.59253 4.60049 4.75122 4.94126 5.16599 5.26549 5.44872 5.51829 5.52473 5.58640 5.69163 5.73864 5.80466 5.82145 5.98655 6.02213 6.18022 6.38255 6.42579 6.57974 6.73872 6.81946 7.66470 7.74637 8.39232 8.44328 9.50621 10.05767 10.40652 11.44425 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.082848 B = 0.003241 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.889177 B = 8636.434933 C = 8879.015803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.006 4.006 3 C -0.223 4.223 4 C 0.541 3.459 5 O -0.543 6.543 6 N -0.720 5.720 7 C 0.111 3.889 8 C 0.145 3.855 9 N -0.730 5.730 10 C -0.244 4.244 11 H 0.071 0.929 12 C -0.012 4.012 13 N -0.932 5.932 14 Si 0.911 3.089 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.285 1.285 18 C -0.132 4.132 19 C -0.173 4.173 20 C -0.167 4.167 21 H 0.080 0.920 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.125 0.875 25 H 0.399 0.601 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.386 0.614 31 H 0.257 0.743 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 -23.664 1.732 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.008 4.008 3 C -0.244 4.244 4 C 0.330 3.670 5 O -0.423 6.423 6 N -0.371 5.371 7 C -0.012 4.012 8 C 0.016 3.984 9 N -0.375 5.375 10 C -0.375 4.375 11 H 0.089 0.911 12 C -0.209 4.209 13 N -0.580 5.580 14 Si 0.741 3.259 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.212 1.212 18 C -0.150 4.150 19 C -0.210 4.210 20 C -0.204 4.204 21 H 0.098 0.902 22 H 0.072 0.928 23 H 0.111 0.889 24 H 0.143 0.857 25 H 0.233 0.767 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.220 0.780 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.098 -23.492 1.585 23.899 hybrid contribution 0.828 1.020 0.095 1.317 sum 4.926 -22.472 1.679 23.067 Atomic orbital electron populations 1.21174 0.90781 1.02339 1.03816 1.21751 0.96174 0.92247 0.90602 1.22312 1.00259 0.91944 1.09917 1.18475 0.86989 0.84172 0.77331 1.90760 1.15080 1.87645 1.48816 1.45843 1.12903 1.05942 1.72411 1.21550 0.95588 0.81900 1.02184 1.20759 0.93704 0.85721 0.98183 1.42192 1.09210 0.99625 1.86467 1.19156 0.93097 0.83849 1.41436 0.91088 1.24782 0.95832 0.97828 1.02413 1.69660 1.06978 1.26152 1.55169 0.86218 0.78421 0.83341 0.77883 1.21186 1.21605 1.21192 1.21281 1.00161 0.88817 1.04780 1.23081 1.00571 0.97675 0.99627 1.22997 1.03708 1.01998 0.91731 0.90190 0.92816 0.88934 0.85669 0.76700 0.91359 0.91364 0.95827 0.95823 0.78004 0.93308 0.86639 0.87951 0.88320 0.88259 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 7.90 36.01 0.28 -1.13 16 2 C -0.01 -0.06 5.81 -101.17 -0.59 -0.65 16 3 C -0.22 -2.55 9.67 -37.81 -0.37 -2.91 16 4 C 0.54 8.11 7.61 -12.66 -0.10 8.01 16 5 O -0.54 -9.89 13.28 5.27 0.07 -9.82 16 6 N -0.72 -10.40 5.55 -61.49 -0.34 -10.74 16 7 C 0.11 1.99 5.79 -4.04 -0.02 1.97 16 8 C 0.14 2.90 6.37 -4.04 -0.03 2.88 16 9 N -0.73 -18.92 5.60 -59.90 -0.34 -19.25 16 10 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 11 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 12 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 13 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 14 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 C -0.13 -1.06 6.01 -91.77 -0.55 -1.61 16 19 C -0.17 -1.16 9.77 -26.70 -0.26 -1.42 16 20 C -0.17 -1.12 10.10 -26.70 -0.27 -1.39 16 21 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 22 H 0.05 0.48 6.31 -51.93 -0.33 0.16 16 23 H 0.09 1.27 6.12 -51.93 -0.32 0.96 16 24 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 25 H 0.40 4.59 8.46 -40.82 -0.35 4.25 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.39 10.57 7.67 -40.82 -0.31 10.26 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.70 6.42 -51.93 -0.33 0.36 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -32.63 305.24 -7.85 -40.49 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.41 Total: 8.91 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.14 Total: -3.79 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.05 Total: -57.86 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.07 Total: -9.82 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.63 -7.85 -40.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124217580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.685 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds