Wall clock time and date at job start Sun Mar 29 2020 22:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 119.99535 * 2 1 4 4 C 1.47101 * 120.00315 * 353.10530 * 3 2 1 5 5 O 1.21612 * 120.00033 * 353.77118 * 4 3 2 6 6 N 1.34782 * 119.99782 * 173.49023 * 4 3 2 7 7 C 1.46499 * 119.99532 * 180.27933 * 6 4 3 8 8 C 1.53001 * 109.46569 * 180.02562 * 7 6 4 9 9 N 1.46507 * 109.46774 * 180.02562 * 8 7 6 10 10 C 1.36935 * 119.99866 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99834 * 359.97438 * 10 9 8 12 12 C 1.38808 * 120.00031 * 179.97438 * 10 9 8 13 13 N 1.31622 * 120.00199 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00064 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47007 * 60.00411 * 14 12 10 16 16 H 1.48498 * 109.46966 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46949 * 300.00216 * 14 12 10 18 18 C 1.50690 * 120.00221 * 180.02562 * 2 1 3 19 19 C 1.53004 * 117.49810 * 8.74040 * 18 2 1 20 20 C 1.53002 * 117.49909 * 300.08674 * 18 2 1 21 21 H 1.08997 * 109.47510 * 84.53153 * 1 2 3 22 22 H 1.09003 * 109.47199 * 204.53668 * 1 2 3 23 23 H 1.09006 * 109.46966 * 324.52765 * 1 2 3 24 24 H 1.07999 * 119.99490 * 173.11084 * 3 2 1 25 25 H 0.96999 * 120.00064 * 0.27886 * 6 4 3 26 26 H 1.09000 * 109.47348 * 300.00042 * 7 6 4 27 27 H 1.08994 * 109.47665 * 60.00431 * 7 6 4 28 28 H 1.09001 * 109.47156 * 299.99362 * 8 7 6 29 29 H 1.08992 * 109.47800 * 59.99759 * 8 7 6 30 30 H 0.96999 * 120.00199 * 359.97438 * 9 8 7 31 31 H 0.96998 * 120.00057 * 179.97438 * 13 12 10 32 32 H 1.09000 * 115.55245 * 154.41153 * 18 2 1 33 33 H 1.08997 * 117.49936 * 0.02562 * 19 18 2 34 34 H 1.09006 * 117.49930 * 145.02050 * 19 18 2 35 35 H 1.09004 * 117.49766 * 214.98081 * 20 18 2 36 36 H 1.09000 * 117.49661 * 359.96947 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4212 -0.1529 5 8 0.2521 2.4136 -0.3924 6 7 2.0980 3.5926 -0.0220 7 6 1.3721 4.8567 -0.1682 8 6 2.3400 6.0257 0.0252 9 7 1.6141 7.2899 -0.1205 10 6 2.2781 8.4800 0.0127 11 1 3.3370 8.4867 0.2255 12 6 1.5904 9.6778 -0.1258 13 7 0.2999 9.6697 -0.3846 14 14 2.4962 11.3014 0.0565 15 1 3.5719 11.3854 -0.9638 16 1 1.5432 12.4240 -0.1348 17 1 3.0933 11.3854 1.4136 18 6 2.2605 -1.3050 -0.0006 19 6 1.4521 -2.5874 -0.2074 20 6 2.0246 -2.2575 1.1733 21 1 -0.3634 0.0979 -1.0229 22 1 -0.3634 -0.9349 0.4268 23 1 -0.3633 0.8370 0.5964 24 1 3.2460 1.1552 0.1122 25 1 3.0490 3.5986 0.1691 26 1 0.9327 4.9102 -1.1643 27 1 0.5822 4.9109 0.5808 28 1 2.7798 5.9724 1.0211 29 1 3.1298 5.9715 -0.7240 30 1 0.6630 7.2839 -0.3112 31 1 -0.1807 10.5067 -0.4811 32 1 3.2637 -1.2685 -0.4253 33 1 0.3753 -2.4872 -0.3434 34 1 1.9236 -3.3948 -0.7679 35 1 2.8725 -2.8478 1.5207 36 1 1.3247 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124217580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:48 Heat of formation + Delta-G solvation = -11.088737 kcal Electronic energy + Delta-G solvation = -15965.782913 eV Core-core repulsion = 13257.392289 eV Total energy + Delta-G solvation = -2708.390623 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92243 -38.86767 -37.32680 -35.51443 -34.10247 -33.15584 -29.98827 -28.34254 -25.91352 -24.61759 -23.20078 -23.04816 -21.55961 -19.62510 -19.16454 -17.98710 -17.16598 -16.71579 -16.64336 -16.15118 -15.65071 -15.32133 -15.09521 -14.94542 -14.39373 -13.97814 -13.84307 -13.07873 -13.04583 -12.86312 -12.62130 -12.53379 -12.45825 -12.21149 -12.12552 -11.86655 -11.83241 -11.31921 -10.98802 -10.65097 -10.21324 -9.73546 -9.08219 -7.97665 -5.29572 0.34018 1.47777 1.51894 1.58028 2.17954 2.25802 2.58278 3.02840 3.36227 3.57023 3.88350 3.97330 3.99835 4.10552 4.14202 4.20993 4.21470 4.33225 4.57117 4.68264 4.75788 4.83508 5.00849 5.02361 5.10483 5.11996 5.16359 5.27378 5.41815 5.48403 5.54490 5.56683 6.22921 6.62230 7.28502 7.29178 8.00544 8.24023 9.25955 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.082848 B = 0.003241 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.889177 B = 8636.434933 C = 8879.015803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.003 3.997 3 C -0.234 4.234 4 C 0.534 3.466 5 O -0.583 6.583 6 N -0.710 5.710 7 C 0.129 3.871 8 C 0.149 3.851 9 N -0.748 5.748 10 C -0.251 4.251 11 H 0.083 0.917 12 C -0.077 4.077 13 N -0.972 5.972 14 Si 0.981 3.019 15 H -0.275 1.275 16 H -0.296 1.296 17 H -0.275 1.275 18 C -0.144 4.144 19 C -0.170 4.170 20 C -0.160 4.160 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.157 0.843 25 H 0.416 0.584 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.374 0.626 31 H 0.253 0.747 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 -25.226 2.171 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.001 3.999 3 C -0.255 4.255 4 C 0.326 3.674 5 O -0.466 6.466 6 N -0.362 5.362 7 C 0.004 3.996 8 C 0.023 3.977 9 N -0.391 5.391 10 C -0.382 4.382 11 H 0.101 0.899 12 C -0.270 4.270 13 N -0.622 5.622 14 Si 0.809 3.191 15 H -0.200 1.200 16 H -0.222 1.222 17 H -0.201 1.201 18 C -0.162 4.162 19 C -0.207 4.207 20 C -0.197 4.197 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.175 0.825 25 H 0.253 0.747 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.205 0.795 31 H 0.062 0.938 32 H 0.149 0.851 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.433 -25.096 2.039 25.988 hybrid contribution 0.098 1.368 -0.032 1.371 sum 6.530 -23.729 2.008 24.693 Atomic orbital electron populations 1.21101 0.91909 1.02345 1.02721 1.22009 0.95715 0.93578 0.88584 1.22319 1.01525 0.90016 1.11602 1.19154 0.86712 0.85239 0.76306 1.90751 1.17007 1.88226 1.50646 1.45658 1.13597 1.04640 1.72335 1.21106 0.94933 0.82903 1.00633 1.20842 0.93775 0.84138 0.98977 1.42436 1.08989 1.01143 1.86563 1.19632 0.93743 0.84836 1.40026 0.89900 1.25703 0.96685 1.01594 1.02972 1.69836 1.08697 1.26641 1.57023 0.85103 0.77138 0.78496 0.78340 1.20046 1.22225 1.20056 1.21336 1.00755 0.87645 1.06453 1.23187 1.00397 0.97201 0.99892 1.23090 1.04123 1.01083 0.91372 0.91351 0.90551 0.91693 0.82511 0.74701 0.93066 0.93046 0.94515 0.94501 0.79478 0.93844 0.85076 0.88359 0.86652 0.86449 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 7.90 71.24 0.56 -2.25 16 2 C 0.00 0.06 5.81 -17.62 -0.10 -0.04 16 3 C -0.23 -4.96 9.67 23.43 0.23 -4.73 16 4 C 0.53 15.91 7.61 86.57 0.66 16.57 16 5 O -0.58 -21.95 13.28 -4.07 -0.05 -22.00 16 6 N -0.71 -19.98 5.55 -466.71 -2.59 -22.57 16 7 C 0.13 4.66 5.79 86.38 0.50 5.16 16 8 C 0.15 5.90 6.37 86.38 0.55 6.45 16 9 N -0.75 -39.03 5.60 -343.44 -1.92 -40.95 16 10 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 11 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 12 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 13 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 14 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 C -0.14 -1.90 6.01 -11.54 -0.07 -1.96 16 19 C -0.17 -1.82 9.77 30.62 0.30 -1.52 16 20 C -0.16 -1.67 10.10 30.62 0.31 -1.36 16 21 H 0.07 1.70 8.05 -2.39 -0.02 1.68 16 22 H 0.08 1.31 6.31 -2.39 -0.02 1.30 16 23 H 0.06 1.86 6.12 -2.38 -0.01 1.84 16 24 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 25 H 0.42 8.78 8.46 -92.71 -0.78 7.99 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.37 21.04 7.67 -92.71 -0.71 20.33 16 31 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.13 6.42 -2.39 -0.02 1.12 16 34 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.81 305.24 1.57 -69.24 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -0.41 Total: 29.57 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 4.24 Total: -0.99 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -4.23 Total: -123.97 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -70.81 1.57 -69.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124217580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.148 kcal (2) G-P(sol) polarization free energy of solvation -70.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds