Wall clock time and date at job start Sun Mar 29 2020 22:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32990 * 119.99933 * 2 1 4 4 C 1.47101 * 119.99760 * 172.96265 * 3 2 1 5 5 O 1.21616 * 120.00178 * 354.03299 * 4 3 2 6 6 N 1.34779 * 120.00047 * 174.03262 * 4 3 2 7 7 C 1.46506 * 119.99896 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46859 * 180.02562 * 7 6 4 9 9 N 1.46496 * 109.46848 * 179.97438 * 8 7 6 10 10 C 1.36941 * 119.99965 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99594 * 0.02562 * 10 9 8 12 12 C 1.38811 * 119.99918 * 180.02562 * 10 9 8 13 13 N 1.31617 * 119.99552 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00192 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46651 * 90.00109 * 14 12 10 16 16 H 1.48495 * 109.47163 * 209.99846 * 14 12 10 17 17 H 1.48500 * 109.47450 * 330.00561 * 14 12 10 18 18 C 1.50698 * 119.99822 * 180.02562 * 2 1 3 19 19 C 1.53002 * 117.49815 * 1.64079 * 18 2 1 20 20 C 1.52996 * 60.00113 * 252.51356 * 19 18 2 21 21 H 1.08995 * 109.47698 * 89.99559 * 1 2 3 22 22 H 1.08996 * 109.47109 * 210.00451 * 1 2 3 23 23 H 1.09006 * 109.46864 * 329.99912 * 1 2 3 24 24 H 1.07995 * 120.00228 * 352.95584 * 3 2 1 25 25 H 0.96998 * 119.99979 * 359.97438 * 6 4 3 26 26 H 1.08993 * 109.47006 * 300.00349 * 7 6 4 27 27 H 1.09003 * 109.46838 * 60.00143 * 7 6 4 28 28 H 1.09004 * 109.46821 * 300.00229 * 8 7 6 29 29 H 1.09001 * 109.46751 * 59.99955 * 8 7 6 30 30 H 0.97003 * 120.00281 * 0.02562 * 9 8 7 31 31 H 0.97004 * 120.00015 * 180.02562 * 13 12 10 32 32 H 1.09002 * 115.55225 * 147.35113 * 18 2 1 33 33 H 1.09002 * 117.50101 * 0.02562 * 19 18 2 34 34 H 1.09003 * 117.49789 * 145.02034 * 19 18 2 35 35 H 1.09006 * 117.49777 * 252.51115 * 20 19 18 36 36 H 1.09001 * 117.51622 * 107.48228 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6346 1.1565 0.1561 5 8 4.2243 0.1196 0.3934 6 7 4.3214 2.3099 0.0360 7 6 5.7782 2.3147 0.1921 8 6 6.3058 3.7393 0.0100 9 7 7.7624 3.7442 0.1666 10 6 8.4602 4.9162 0.0447 11 1 7.9366 5.8369 -0.1664 12 6 9.8404 4.9207 0.1926 13 7 10.5110 6.0472 0.0760 14 14 10.7458 3.3283 0.5585 15 1 11.1336 2.6751 -0.7175 16 1 11.9646 3.6234 1.3538 17 1 9.8591 2.4206 1.3298 18 6 2.2605 -1.3051 -0.0006 19 6 1.4388 -2.5952 -0.0400 20 6 2.1540 -2.1828 1.2481 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6381 2.0835 -0.1147 25 1 3.8513 3.1369 -0.1536 26 1 6.0381 1.9559 1.1879 27 1 6.2260 1.6624 -0.5576 28 1 6.0458 4.0985 -0.9858 29 1 5.8579 4.3913 0.7599 30 1 8.2327 2.9172 0.3558 31 1 11.4755 6.0504 0.1789 32 1 3.2126 -1.2981 -0.5311 33 1 0.3532 -2.4999 -0.0660 34 1 1.8503 -3.4371 -0.5968 35 1 3.0360 -2.7535 1.5389 36 1 1.5392 -1.8161 2.0701 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124217581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:50 Heat of formation + Delta-G solvation = -7.014994 kcal Electronic energy + Delta-G solvation = -16182.690388 eV Core-core repulsion = 13474.476415 eV Total energy + Delta-G solvation = -2708.213973 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91193 -38.74974 -37.36912 -35.46264 -34.33165 -33.43531 -30.29910 -28.57324 -25.54340 -24.11758 -23.21985 -23.11294 -21.79321 -20.02959 -19.38373 -18.05452 -17.21436 -16.70351 -16.52191 -16.01801 -15.71925 -15.45149 -15.08431 -14.71186 -14.31686 -13.97795 -13.90823 -13.44231 -13.21635 -13.12333 -12.73426 -12.62002 -12.45573 -12.17965 -12.10292 -11.84380 -11.68453 -11.31005 -11.05278 -10.56220 -10.15991 -9.71796 -9.38473 -8.07064 -5.42549 0.37680 1.37762 1.39526 1.46875 2.21212 2.29625 2.45252 3.06332 3.24661 3.61773 3.72085 3.86668 3.98241 4.05829 4.18073 4.18667 4.27298 4.44467 4.53677 4.67970 4.75321 4.83483 4.97097 4.98927 5.07956 5.11816 5.23145 5.26450 5.43062 5.48886 5.66587 5.70683 6.16143 6.64234 7.01253 7.31540 7.75718 7.93680 9.13855 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048508 B = 0.003924 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.089427 B = 7133.494372 C = 7625.894407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.002 3.998 3 C -0.239 4.239 4 C 0.534 3.466 5 O -0.579 6.579 6 N -0.713 5.713 7 C 0.125 3.875 8 C 0.151 3.849 9 N -0.759 5.759 10 C -0.240 4.240 11 H 0.064 0.936 12 C -0.059 4.059 13 N -0.980 5.980 14 Si 0.953 3.047 15 H -0.277 1.277 16 H -0.292 1.292 17 H -0.256 1.256 18 C -0.144 4.144 19 C -0.166 4.166 20 C -0.164 4.164 21 H 0.095 0.905 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.160 0.840 25 H 0.416 0.584 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.366 0.634 31 H 0.260 0.740 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.544 -15.172 -0.165 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.000 4.000 3 C -0.259 4.259 4 C 0.326 3.674 5 O -0.461 6.461 6 N -0.365 5.365 7 C 0.000 4.000 8 C 0.024 3.976 9 N -0.406 5.406 10 C -0.370 4.370 11 H 0.082 0.918 12 C -0.251 4.251 13 N -0.630 5.630 14 Si 0.780 3.220 15 H -0.203 1.203 16 H -0.218 1.218 17 H -0.180 1.180 18 C -0.162 4.162 19 C -0.202 4.202 20 C -0.201 4.201 21 H 0.113 0.887 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.177 0.823 25 H 0.252 0.748 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.199 0.801 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.102 -15.643 -0.030 28.733 hybrid contribution 1.286 0.011 0.113 1.291 sum -22.815 -15.631 0.083 27.657 Atomic orbital electron populations 1.21092 0.88164 1.04545 1.04313 1.22153 0.97072 0.92326 0.88403 1.22440 0.91183 1.00499 1.11787 1.19209 0.89327 0.82690 0.76219 1.90740 1.72205 1.32691 1.50502 1.45682 1.06999 1.11265 1.72575 1.21161 0.80794 0.96979 1.01062 1.20829 0.83126 0.94137 0.99498 1.42566 1.03408 1.06686 1.87910 1.19024 0.90256 0.87702 1.40058 0.91844 1.25485 0.97188 1.00157 1.02280 1.69867 1.07440 1.27323 1.58365 0.85443 0.78247 0.79989 0.78339 1.20277 1.21827 1.18028 1.21412 1.00408 0.89937 1.04415 1.23229 1.00010 0.97018 0.99987 1.22830 1.02845 1.02550 0.91916 0.88704 0.89796 0.89429 0.82258 0.74758 0.92542 0.92413 0.94094 0.94188 0.80071 0.93114 0.88261 0.86194 0.88331 0.89790 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.49 71.24 0.68 -0.47 16 2 C 0.00 0.04 5.80 -17.62 -0.10 -0.06 16 3 C -0.24 -4.59 9.62 23.43 0.23 -4.36 16 4 C 0.53 14.77 7.67 86.57 0.66 15.43 16 5 O -0.58 -20.34 13.31 -4.08 -0.05 -20.39 16 6 N -0.71 -18.44 5.55 -466.69 -2.59 -21.03 16 7 C 0.13 4.05 5.79 86.38 0.50 4.55 16 8 C 0.15 5.57 6.37 86.38 0.55 6.12 16 9 N -0.76 -36.11 5.41 -343.44 -1.86 -37.97 16 10 C -0.24 -13.79 10.47 84.03 0.88 -12.91 16 11 H 0.06 3.93 8.06 -2.91 -0.02 3.90 16 12 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 13 N -0.98 -63.00 13.97 21.65 0.30 -62.70 16 14 Si 0.95 46.22 27.73 68.60 1.90 48.12 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 16 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 17 H -0.26 -11.41 6.52 99.48 0.65 -10.76 16 18 C -0.14 -3.10 4.35 -11.54 -0.05 -3.15 16 19 C -0.17 -2.50 9.79 30.59 0.30 -2.20 16 20 C -0.16 -3.18 10.23 30.59 0.31 -2.87 16 21 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.08 0.62 6.37 -2.39 -0.02 0.61 16 23 H 0.09 0.59 8.07 -2.38 -0.02 0.57 16 24 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 25 H 0.42 8.09 8.46 -92.71 -0.78 7.31 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.37 16.90 5.53 -92.71 -0.51 16.38 16 31 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.10 2.85 6.24 -2.39 -0.01 2.84 16 33 H 0.12 1.21 6.31 -2.39 -0.02 1.19 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.31 302.34 1.85 -71.45 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.27 Total: 25.48 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 4.42 Total: -2.96 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -4.15 Total: -121.70 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Total: -73.31 1.85 -71.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124217581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.438 kcal (2) G-P(sol) polarization free energy of solvation -73.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds