Wall clock time and date at job start Sun Mar 29 2020 22:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47106 * 119.99532 * 2 1 4 4 O 1.21617 * 119.99629 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00040 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47237 * 179.72043 * 6 5 3 8 8 N 1.46496 * 109.47238 * 179.97438 * 7 6 5 9 9 C 1.36936 * 120.00309 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99552 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00076 * 180.02562 * 9 8 7 12 12 N 1.31619 * 119.99892 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99656 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46887 * 90.00562 * 13 11 9 15 15 H 1.48505 * 109.47071 * 210.00315 * 13 11 9 16 16 H 1.48498 * 109.47364 * 330.00117 * 13 11 9 17 17 C 1.32986 * 120.00329 * 179.97438 * 2 1 3 18 18 C 1.51407 * 136.31548 * 179.62836 * 17 2 1 19 19 C 1.53385 * 87.51751 * 206.06276 * 18 17 2 20 20 C 1.51413 * 136.31796 * 0.02562 * 17 2 1 21 21 H 1.09000 * 109.46981 * 90.00080 * 1 2 3 22 22 H 1.09001 * 109.47106 * 209.99525 * 1 2 3 23 23 H 1.09000 * 109.47455 * 330.00264 * 1 2 3 24 24 H 0.97005 * 120.00161 * 359.72096 * 5 3 2 25 25 H 1.09001 * 109.46512 * 299.72412 * 6 5 3 26 26 H 1.08998 * 109.47174 * 59.71534 * 6 5 3 27 27 H 1.09000 * 109.46986 * 299.99958 * 7 6 5 28 28 H 1.09002 * 109.46857 * 60.00093 * 7 6 5 29 29 H 0.97005 * 119.99809 * 0.02562 * 8 7 6 30 30 H 0.97000 * 119.99521 * 180.02562 * 12 11 9 31 31 H 1.08993 * 113.56307 * 320.64490 * 18 17 2 32 32 H 1.08998 * 113.55925 * 91.38375 * 18 17 2 33 33 H 1.09004 * 113.96422 * 220.29494 * 19 18 17 34 34 H 1.08996 * 113.59956 * 88.79878 * 19 18 17 35 35 H 1.09001 * 113.55355 * 268.61999 * 20 17 2 36 36 H 1.08995 * 113.55880 * 39.35111 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3009 3.7100 0.0000 7 6 1.3067 4.8728 -0.0063 8 7 2.0390 6.1416 -0.0063 9 6 1.3544 7.3275 -0.0109 10 1 0.2744 7.3273 -0.0141 11 6 2.0484 8.5296 -0.0114 12 7 3.3646 8.5297 -0.0079 13 14 1.1143 10.1473 -0.0184 14 1 0.8621 10.5793 1.3799 15 1 1.9191 11.1806 -0.7182 16 1 -0.1809 9.9680 -0.7224 17 6 2.1720 -1.1517 0.0005 18 6 3.6251 -1.5769 -0.0061 19 6 3.1710 -2.8819 -0.6720 20 6 1.8140 -2.6228 0.0007 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 0.5985 2.4411 -0.0032 25 1 2.9245 3.7698 0.8920 26 1 2.9307 3.7656 -0.8879 27 1 0.6831 4.8129 -0.8983 28 1 0.6770 4.8172 0.8817 29 1 3.0091 6.1416 -0.0030 30 1 3.8495 9.3698 -0.0079 31 1 4.2567 -0.9603 -0.6454 32 1 4.0421 -1.7188 0.9910 33 1 3.6837 -3.7697 -0.3017 34 1 3.1401 -2.8287 -1.7602 35 1 1.7339 -3.0515 0.9997 36 1 0.9605 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126875404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:20 Heat of formation + Delta-G solvation = 6.037911 kcal Electronic energy + Delta-G solvation = -16211.825372 eV Core-core repulsion = 13504.177415 eV Total energy + Delta-G solvation = -2707.647956 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.93673 -38.38735 -35.60374 -33.98125 -33.07044 -31.05942 -27.70954 -26.73283 -25.69652 -24.01366 -22.71047 -21.46958 -20.44433 -18.25657 -17.19054 -16.47089 -15.86195 -15.74842 -15.17287 -14.63167 -14.21273 -13.84816 -13.71714 -13.12900 -13.08065 -12.87454 -12.63159 -12.58659 -12.09869 -11.78041 -11.39907 -11.16271 -11.07093 -10.81303 -10.79179 -10.62396 -10.10708 -9.80387 -9.53571 -9.05264 -8.93165 -8.70015 -6.98166 -5.78500 -3.09145 1.30661 3.30423 3.38524 3.43104 3.48108 3.50015 4.23448 4.33567 4.53996 4.59711 4.87066 4.88696 5.11148 5.33092 5.41585 5.43875 5.47300 5.51640 5.57493 5.62974 5.71923 5.81306 5.90743 5.99334 6.03882 6.12096 6.20971 6.53101 6.56449 6.73141 6.80590 7.66810 7.72694 8.38740 8.42712 9.50370 10.05452 10.40348 11.44160 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.066879 B = 0.003621 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.566239 B = 7731.712496 C = 8090.935318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.163 4.163 3 C 0.552 3.448 4 O -0.542 6.542 5 N -0.720 5.720 6 C 0.111 3.889 7 C 0.145 3.855 8 N -0.730 5.730 9 C -0.244 4.244 10 H 0.072 0.928 11 C -0.012 4.012 12 N -0.931 5.931 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.281 1.281 17 C -0.075 4.075 18 C -0.103 4.103 19 C -0.142 4.142 20 C -0.105 4.105 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.399 0.601 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.386 0.614 30 H 0.256 0.744 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 -22.708 -0.128 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.166 4.166 3 C 0.340 3.660 4 O -0.421 6.421 5 N -0.372 5.372 6 C -0.012 4.012 7 C 0.016 3.984 8 N -0.375 5.375 9 C -0.375 4.375 10 H 0.090 0.910 11 C -0.209 4.209 12 N -0.579 5.579 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.207 1.207 17 C -0.077 4.077 18 C -0.139 4.139 19 C -0.180 4.180 20 C -0.141 4.141 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.234 0.766 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.220 0.780 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.800 -22.543 -0.137 23.048 hybrid contribution -0.662 1.046 -0.007 1.237 sum -5.462 -21.497 -0.144 22.181 Atomic orbital electron populations 1.20684 0.90563 1.02926 1.02475 1.20503 0.95832 0.91440 1.08809 1.18215 0.87255 0.83774 0.76746 1.90774 1.13519 1.87717 1.50105 1.45877 1.10445 1.05904 1.74958 1.21567 0.95436 0.81697 1.02535 1.20756 0.93518 0.85709 0.98377 1.42195 1.06022 0.99579 1.89683 1.19199 0.91042 0.83874 1.43375 0.91029 1.24783 0.95568 0.97819 1.02702 1.69672 1.05158 1.25828 1.57236 0.86144 0.78603 0.83594 0.77541 1.21631 1.21689 1.20701 1.23198 0.98102 0.93588 0.92817 1.22165 0.94147 0.95774 1.01847 1.22715 0.96644 0.98212 1.00380 1.22275 0.98470 0.91752 1.01641 0.91077 0.91301 0.91344 0.76616 0.91296 0.91314 0.95811 0.95815 0.77996 0.93365 0.89572 0.88622 0.90551 0.89821 0.88373 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.57 36.01 0.34 -0.59 16 2 C -0.16 -1.95 6.00 -102.85 -0.62 -2.57 16 3 C 0.55 8.66 7.75 -12.66 -0.10 8.56 16 4 O -0.54 -10.44 15.15 5.26 0.08 -10.36 16 5 N -0.72 -10.66 5.50 -61.49 -0.34 -11.00 16 6 C 0.11 2.01 5.79 -4.04 -0.02 1.98 16 7 C 0.14 2.91 6.37 -4.04 -0.03 2.89 16 8 N -0.73 -18.91 5.60 -59.91 -0.34 -19.24 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 12 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 13 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C -0.08 -0.83 6.60 -100.48 -0.66 -1.49 16 18 C -0.10 -1.11 6.99 -27.55 -0.19 -1.30 16 19 C -0.14 -1.11 8.17 -26.20 -0.21 -1.33 16 20 C -0.10 -0.80 7.71 -27.41 -0.21 -1.01 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.49 7.91 -51.93 -0.41 0.08 16 23 H 0.07 0.54 6.71 -51.93 -0.35 0.19 16 24 H 0.40 4.75 6.58 -40.82 -0.27 4.48 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.39 10.58 7.67 -40.82 -0.31 10.27 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.09 1.12 7.49 -51.93 -0.39 0.73 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -33.18 304.53 -7.75 -40.93 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.50 Total: 7.83 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.95 Total: -2.37 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.05 Total: -58.07 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.18 -7.75 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126875404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.969 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds