Wall clock time and date at job start Sun Mar 29 2020 22:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47106 * 119.99532 * 2 1 4 4 O 1.21617 * 119.99629 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00040 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47237 * 179.72043 * 6 5 3 8 8 N 1.46496 * 109.47238 * 179.97438 * 7 6 5 9 9 C 1.36936 * 120.00309 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99552 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00076 * 180.02562 * 9 8 7 12 12 N 1.31619 * 119.99892 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99656 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46887 * 90.00562 * 13 11 9 15 15 H 1.48505 * 109.47071 * 210.00315 * 13 11 9 16 16 H 1.48498 * 109.47364 * 330.00117 * 13 11 9 17 17 C 1.32986 * 120.00329 * 179.97438 * 2 1 3 18 18 C 1.51407 * 136.31548 * 179.62836 * 17 2 1 19 19 C 1.53385 * 87.51751 * 206.06276 * 18 17 2 20 20 C 1.51413 * 136.31796 * 0.02562 * 17 2 1 21 21 H 1.09000 * 109.46981 * 90.00080 * 1 2 3 22 22 H 1.09001 * 109.47106 * 209.99525 * 1 2 3 23 23 H 1.09000 * 109.47455 * 330.00264 * 1 2 3 24 24 H 0.97005 * 120.00161 * 359.72096 * 5 3 2 25 25 H 1.09001 * 109.46512 * 299.72412 * 6 5 3 26 26 H 1.08998 * 109.47174 * 59.71534 * 6 5 3 27 27 H 1.09000 * 109.46986 * 299.99958 * 7 6 5 28 28 H 1.09002 * 109.46857 * 60.00093 * 7 6 5 29 29 H 0.97005 * 119.99809 * 0.02562 * 8 7 6 30 30 H 0.97000 * 119.99521 * 180.02562 * 12 11 9 31 31 H 1.08993 * 113.56307 * 320.64490 * 18 17 2 32 32 H 1.08998 * 113.55925 * 91.38375 * 18 17 2 33 33 H 1.09004 * 113.96422 * 220.29494 * 19 18 17 34 34 H 1.08996 * 113.59956 * 88.79878 * 19 18 17 35 35 H 1.09001 * 113.55355 * 268.61999 * 20 17 2 36 36 H 1.08995 * 113.55880 * 39.35111 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3009 3.7100 0.0000 7 6 1.3067 4.8728 -0.0063 8 7 2.0390 6.1416 -0.0063 9 6 1.3544 7.3275 -0.0109 10 1 0.2744 7.3273 -0.0141 11 6 2.0484 8.5296 -0.0114 12 7 3.3646 8.5297 -0.0079 13 14 1.1143 10.1473 -0.0184 14 1 0.8621 10.5793 1.3799 15 1 1.9191 11.1806 -0.7182 16 1 -0.1809 9.9680 -0.7224 17 6 2.1720 -1.1517 0.0005 18 6 3.6251 -1.5769 -0.0061 19 6 3.1710 -2.8819 -0.6720 20 6 1.8140 -2.6228 0.0007 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 0.5985 2.4411 -0.0032 25 1 2.9245 3.7698 0.8920 26 1 2.9307 3.7656 -0.8879 27 1 0.6831 4.8129 -0.8983 28 1 0.6770 4.8172 0.8817 29 1 3.0091 6.1416 -0.0030 30 1 3.8495 9.3698 -0.0079 31 1 4.2567 -0.9603 -0.6454 32 1 4.0421 -1.7188 0.9910 33 1 3.6837 -3.7697 -0.3017 34 1 3.1401 -2.8287 -1.7602 35 1 1.7339 -3.0515 0.9997 36 1 0.9605 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126875404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:20 Heat of formation + Delta-G solvation = -16.931151 kcal Electronic energy + Delta-G solvation = -16212.821385 eV Core-core repulsion = 13504.177415 eV Total energy + Delta-G solvation = -2708.643969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05363 -39.31303 -37.29420 -35.57683 -34.16415 -32.92360 -29.43128 -27.46272 -26.42259 -25.80450 -23.95131 -23.04988 -21.49339 -19.54312 -19.02663 -17.48428 -17.12265 -16.76571 -16.54628 -16.28655 -15.54074 -15.24490 -15.16600 -14.71504 -14.56984 -13.88667 -13.32704 -13.29629 -13.10390 -13.04530 -12.85845 -12.68055 -12.54749 -12.44117 -12.09543 -11.90057 -11.85853 -11.43055 -11.00493 -10.71739 -10.24045 -9.73678 -9.08745 -7.97961 -5.29921 0.35365 1.47916 1.50693 1.59152 2.08358 2.23351 2.57289 3.36199 3.40158 3.58496 3.82878 3.95053 4.00279 4.14968 4.18251 4.25122 4.43559 4.53885 4.74777 4.75520 4.81460 4.85293 4.98481 5.01794 5.05275 5.09782 5.09999 5.35726 5.37079 5.39130 5.47827 5.74156 6.22543 6.55873 7.21612 7.28657 7.99741 8.23428 9.25860 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.066879 B = 0.003621 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.566239 B = 7731.712496 C = 8090.935318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.181 4.181 3 C 0.544 3.456 4 O -0.589 6.589 5 N -0.709 5.709 6 C 0.128 3.872 7 C 0.150 3.850 8 N -0.748 5.748 9 C -0.250 4.250 10 H 0.084 0.916 11 C -0.077 4.077 12 N -0.972 5.972 13 Si 0.981 3.019 14 H -0.285 1.285 15 H -0.296 1.296 16 H -0.265 1.265 17 C -0.080 4.080 18 C -0.120 4.120 19 C -0.131 4.131 20 C -0.088 4.088 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.415 0.585 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.373 0.627 30 H 0.253 0.747 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.084 -24.398 -0.045 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.334 3.666 4 O -0.471 6.471 5 N -0.361 5.361 6 C 0.003 3.997 7 C 0.023 3.977 8 N -0.391 5.391 9 C -0.381 4.381 10 H 0.102 0.898 11 C -0.270 4.270 12 N -0.622 5.622 13 Si 0.809 3.191 14 H -0.212 1.212 15 H -0.223 1.223 16 H -0.189 1.189 17 C -0.082 4.082 18 C -0.157 4.157 19 C -0.169 4.169 20 C -0.125 4.125 21 H 0.100 0.900 22 H 0.107 0.893 23 H 0.091 0.909 24 H 0.253 0.747 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.205 0.795 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.417 -24.273 -0.056 25.381 hybrid contribution 0.183 1.467 -0.030 1.479 sum -7.234 -22.806 -0.086 23.926 Atomic orbital electron populations 1.20730 0.87682 1.04171 1.03524 1.20553 0.97609 0.89519 1.10703 1.18977 0.87007 0.85061 0.75518 1.90752 1.15682 1.88404 1.52244 1.45689 1.11148 1.04619 1.74689 1.21141 0.94854 0.82740 1.00932 1.20837 0.93531 0.84028 0.99296 1.42436 1.05757 1.01109 1.89803 1.19669 0.91775 0.84817 1.41865 0.89816 1.25704 0.96457 1.01557 1.03244 1.69847 1.06903 1.26340 1.59090 0.85030 0.77700 0.78796 0.77530 1.21209 1.22266 1.18943 1.23728 0.98399 0.95415 0.90657 1.22319 0.94029 0.97508 1.01849 1.22702 0.96795 0.97071 1.00300 1.22319 0.98804 0.88325 1.03028 0.90034 0.89277 0.90897 0.74652 0.92988 0.93061 0.94419 0.94374 0.79493 0.93867 0.92814 0.88353 0.88462 0.89799 0.86347 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.57 71.24 0.68 -0.80 16 2 C -0.18 -4.12 6.00 -18.70 -0.11 -4.23 16 3 C 0.54 17.22 7.75 86.57 0.67 17.89 16 4 O -0.59 -23.72 15.15 -4.09 -0.06 -23.78 16 5 N -0.71 -20.73 5.50 -466.70 -2.57 -23.30 16 6 C 0.13 4.71 5.79 86.38 0.50 5.21 16 7 C 0.15 5.94 6.37 86.38 0.55 6.49 16 8 N -0.75 -39.04 5.60 -343.46 -1.92 -40.97 16 9 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 10 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 11 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 12 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 13 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 14 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 15 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 17 C -0.08 -1.65 6.60 -17.17 -0.11 -1.77 16 18 C -0.12 -2.58 6.99 30.06 0.21 -2.37 16 19 C -0.13 -1.77 8.17 30.94 0.25 -1.51 16 20 C -0.09 -1.04 7.71 30.16 0.23 -0.81 16 21 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.09 0.91 7.91 -2.39 -0.02 0.90 16 23 H 0.07 0.94 6.71 -2.39 -0.02 0.93 16 24 H 0.42 9.25 6.58 -92.70 -0.61 8.64 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.37 21.09 7.67 -92.70 -0.71 20.38 16 30 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.05 1.49 7.49 -2.39 -0.02 1.47 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.95 304.53 1.70 -71.25 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.24 Total: 28.21 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 4.18 Total: 0.89 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -4.21 Total: -124.71 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.95 1.70 -71.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126875404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.321 kcal (2) G-P(sol) polarization free energy of solvation -72.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds