Wall clock time and date at job start Sun Mar 29 2020 22:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 110.43385 * 2 1 4 4 O 1.21280 * 120.00149 * 240.89334 * 3 2 1 5 5 N 1.34780 * 120.00015 * 60.89700 * 3 2 1 6 6 C 1.46495 * 119.99837 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47218 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.47218 * 180.02562 * 7 6 5 9 9 C 1.36941 * 119.99452 * 180.02562 * 8 7 6 10 10 H 1.07992 * 120.00316 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99503 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99979 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00185 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47331 * 90.00140 * 13 11 9 15 15 H 1.48501 * 109.47516 * 209.99879 * 13 11 9 16 16 H 1.48505 * 109.47369 * 330.00069 * 13 11 9 17 17 C 1.51104 * 110.38772 * 122.34800 * 2 1 3 18 18 C 1.30527 * 111.10523 * 135.49310 * 17 2 1 19 19 C 1.51104 * 111.10149 * 359.61668 * 18 17 2 20 20 C 1.54632 * 110.38818 * 237.65297 * 2 1 3 21 21 H 1.09004 * 109.47118 * 299.10532 * 1 2 3 22 22 H 1.09002 * 109.47138 * 59.10607 * 1 2 3 23 23 H 1.09001 * 109.47023 * 179.10369 * 1 2 3 24 24 H 0.97001 * 119.99710 * 359.97438 * 5 3 2 25 25 H 1.08996 * 109.47206 * 300.00034 * 6 5 3 26 26 H 1.09004 * 109.47062 * 59.99674 * 6 5 3 27 27 H 1.09002 * 109.47060 * 300.00606 * 7 6 5 28 28 H 1.08998 * 109.46531 * 59.99640 * 7 6 5 29 29 H 0.96996 * 119.99989 * 359.97438 * 8 7 6 30 30 H 0.96999 * 119.99653 * 179.97438 * 12 11 9 31 31 H 1.08002 * 124.44506 * 315.22319 * 17 2 1 32 32 H 1.07991 * 124.44863 * 179.73328 * 18 17 2 33 33 H 1.08996 * 110.52393 * 225.02179 * 19 18 17 34 34 H 1.08993 * 110.29475 * 102.72697 * 19 18 17 35 35 H 1.09002 * 111.03487 * 334.58456 * 20 2 1 36 36 H 1.09000 * 111.03782 * 98.48492 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7466 1.8021 -0.9177 5 7 1.7594 2.2419 1.0199 6 6 2.2704 3.6149 1.0195 7 6 1.7906 4.3380 2.2797 8 7 2.3011 5.7111 2.2791 9 6 1.9995 6.5541 3.3153 10 1 1.3850 6.2068 4.1326 11 6 2.4828 7.8553 3.3144 12 7 2.1925 8.6658 4.3101 13 14 3.5451 8.4563 1.9003 14 1 2.6796 9.0412 0.8447 15 1 4.4894 9.4901 2.3950 16 1 4.3108 7.3155 1.3367 17 6 2.0563 -0.7578 1.1966 18 6 3.0341 -1.5528 0.8565 19 6 3.3166 -1.4646 -0.6253 20 6 2.0686 -0.7755 -1.2245 21 1 -0.3633 0.4999 0.8979 22 1 -0.3633 0.5277 -0.8819 23 1 -0.3633 -1.0276 -0.0161 24 1 1.2069 1.9302 1.7537 25 1 3.3601 3.5970 1.0031 26 1 1.9023 4.1393 0.1377 27 1 0.7008 4.3558 2.2957 28 1 2.1583 3.8135 3.1616 29 1 2.8533 6.0229 1.5451 30 1 2.5305 9.5750 4.3096 31 1 1.6765 -0.6521 2.2021 32 1 3.5695 -2.1913 1.5435 33 1 3.4413 -2.4605 -1.0505 34 1 4.2065 -0.8616 -0.8053 35 1 1.3436 -1.5119 -1.5712 36 1 2.3457 -0.0937 -2.0286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132501889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:09 Heat of formation + Delta-G solvation = -12.130469 kcal Electronic energy + Delta-G solvation = -16695.704504 eV Core-core repulsion = 13987.268707 eV Total energy + Delta-G solvation = -2708.435796 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63895 -37.79071 -35.79911 -33.98310 -31.94833 -31.21849 -29.20820 -28.05983 -25.24856 -23.68532 -21.91514 -21.47866 -19.99516 -18.92109 -17.79030 -17.04683 -16.08504 -15.51818 -15.16478 -14.67862 -14.36093 -13.87971 -13.73891 -13.45299 -13.24454 -12.64823 -12.50255 -12.16867 -12.04917 -11.62889 -11.51244 -11.39431 -11.29459 -11.04085 -10.88008 -10.85299 -10.17025 -10.04201 -9.63619 -9.07293 -9.01212 -8.87411 -7.31314 -5.81069 -3.18441 1.92387 2.72236 3.24814 3.37797 3.41579 3.45504 4.24072 4.39321 4.56738 4.66222 4.80714 5.01679 5.15712 5.27349 5.34405 5.43735 5.46273 5.47069 5.59395 5.63194 5.65893 5.70611 5.83485 5.90591 5.97387 6.09295 6.21031 6.40677 6.58275 6.59862 6.63864 7.57248 7.92502 8.27785 8.37142 9.14813 9.87169 10.05611 11.36826 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045561 B = 0.004465 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.415426 B = 6270.021337 C = 6454.744303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C 0.528 3.472 4 O -0.541 6.541 5 N -0.719 5.719 6 C 0.107 3.893 7 C 0.149 3.851 8 N -0.753 5.753 9 C -0.249 4.249 10 H 0.091 0.909 11 C 0.008 3.992 12 N -0.932 5.932 13 Si 0.884 3.116 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.276 1.276 17 C -0.163 4.163 18 C -0.149 4.149 19 C -0.104 4.104 20 C -0.108 4.108 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.400 0.600 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.363 0.637 30 H 0.261 0.739 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 -22.220 -8.627 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 C 0.313 3.687 4 O -0.418 6.418 5 N -0.370 5.370 6 C -0.017 4.017 7 C 0.021 3.979 8 N -0.399 5.399 9 C -0.379 4.379 10 H 0.109 0.891 11 C -0.189 4.189 12 N -0.579 5.579 13 Si 0.714 3.286 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.202 1.202 17 C -0.182 4.182 18 C -0.167 4.167 19 C -0.141 4.141 20 C -0.146 4.146 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.235 0.765 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.196 0.804 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.634 -21.808 -9.073 23.677 hybrid contribution 0.529 0.474 -0.360 0.796 sum -1.105 -21.334 -9.432 23.353 Atomic orbital electron populations 1.21793 0.91943 1.02834 1.02729 1.20647 0.97230 0.92339 0.96038 1.20281 0.80037 0.86575 0.81775 1.90671 1.38395 1.76933 1.35823 1.45861 1.53734 1.13149 1.24216 1.21598 0.99369 0.80822 0.99910 1.20727 0.97181 0.86188 0.93799 1.42536 1.62455 1.08843 1.26062 1.19012 1.27341 0.92073 0.99447 0.89093 1.24668 1.00283 0.96220 0.97692 1.69702 1.49557 1.06848 1.31826 0.86548 0.80787 0.78486 0.82742 1.20889 1.21559 1.20200 1.23084 0.99007 0.98179 0.97886 1.23396 0.97144 0.98812 0.97359 1.21410 0.99073 1.00832 0.92805 1.22484 0.96768 0.98670 0.96661 0.91843 0.91865 0.91308 0.76543 0.91456 0.91397 0.94909 0.94986 0.80391 0.92929 0.85139 0.85438 0.90943 0.90257 0.90504 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.41 37.15 0.31 -0.81 16 2 C -0.06 -0.62 0.73 -155.76 -0.11 -0.73 16 3 C 0.53 7.44 6.54 -10.98 -0.07 7.37 16 4 O -0.54 -9.68 15.44 5.56 0.09 -9.59 16 5 N -0.72 -9.66 5.41 -60.29 -0.33 -9.99 16 6 C 0.11 1.76 5.79 -4.04 -0.02 1.74 16 7 C 0.15 2.81 6.37 -4.04 -0.03 2.78 16 8 N -0.75 -18.07 5.41 -59.91 -0.32 -18.39 16 9 C -0.25 -7.08 10.47 -15.06 -0.16 -7.24 16 10 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 11 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 12 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 13 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.28 -6.61 6.52 56.52 0.37 -6.25 16 17 C -0.16 -1.51 9.29 -35.70 -0.33 -1.84 16 18 C -0.15 -1.34 10.78 -35.70 -0.38 -1.73 16 19 C -0.10 -0.98 6.81 -26.82 -0.18 -1.16 16 20 C -0.11 -1.08 6.05 -25.01 -0.15 -1.23 16 21 H 0.06 0.48 7.73 -51.93 -0.40 0.07 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 24 H 0.40 4.32 8.00 -40.82 -0.33 3.99 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.36 8.59 5.53 -40.82 -0.23 8.37 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 36 H 0.09 1.08 6.91 -51.93 -0.36 0.72 16 LS Contribution 299.13 15.07 4.51 4.51 Total: -1.00 -33.39 299.13 -6.76 -40.15 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.54 Total: 6.94 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.23 Total: -2.72 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.12 Total: -56.89 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.39 -6.76 -40.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132501889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.022 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds