Wall clock time and date at job start Sun Mar 29 2020 22:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 110.43385 * 2 1 4 4 O 1.21280 * 120.00149 * 240.89334 * 3 2 1 5 5 N 1.34780 * 120.00015 * 60.89700 * 3 2 1 6 6 C 1.46495 * 119.99837 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47218 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.47218 * 180.02562 * 7 6 5 9 9 C 1.36941 * 119.99452 * 180.02562 * 8 7 6 10 10 H 1.07992 * 120.00316 * 359.97438 * 9 8 7 11 11 C 1.38813 * 119.99503 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99979 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00185 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47331 * 90.00140 * 13 11 9 15 15 H 1.48501 * 109.47516 * 209.99879 * 13 11 9 16 16 H 1.48505 * 109.47369 * 330.00069 * 13 11 9 17 17 C 1.51104 * 110.38772 * 122.34800 * 2 1 3 18 18 C 1.30527 * 111.10523 * 135.49310 * 17 2 1 19 19 C 1.51104 * 111.10149 * 359.61668 * 18 17 2 20 20 C 1.54632 * 110.38818 * 237.65297 * 2 1 3 21 21 H 1.09004 * 109.47118 * 299.10532 * 1 2 3 22 22 H 1.09002 * 109.47138 * 59.10607 * 1 2 3 23 23 H 1.09001 * 109.47023 * 179.10369 * 1 2 3 24 24 H 0.97001 * 119.99710 * 359.97438 * 5 3 2 25 25 H 1.08996 * 109.47206 * 300.00034 * 6 5 3 26 26 H 1.09004 * 109.47062 * 59.99674 * 6 5 3 27 27 H 1.09002 * 109.47060 * 300.00606 * 7 6 5 28 28 H 1.08998 * 109.46531 * 59.99640 * 7 6 5 29 29 H 0.96996 * 119.99989 * 359.97438 * 8 7 6 30 30 H 0.96999 * 119.99653 * 179.97438 * 12 11 9 31 31 H 1.08002 * 124.44506 * 315.22319 * 17 2 1 32 32 H 1.07991 * 124.44863 * 179.73328 * 18 17 2 33 33 H 1.08996 * 110.52393 * 225.02179 * 19 18 17 34 34 H 1.08993 * 110.29475 * 102.72697 * 19 18 17 35 35 H 1.09002 * 111.03487 * 334.58456 * 20 2 1 36 36 H 1.09000 * 111.03782 * 98.48492 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7466 1.8021 -0.9177 5 7 1.7594 2.2419 1.0199 6 6 2.2704 3.6149 1.0195 7 6 1.7906 4.3380 2.2797 8 7 2.3011 5.7111 2.2791 9 6 1.9995 6.5541 3.3153 10 1 1.3850 6.2068 4.1326 11 6 2.4828 7.8553 3.3144 12 7 2.1925 8.6658 4.3101 13 14 3.5451 8.4563 1.9003 14 1 2.6796 9.0412 0.8447 15 1 4.4894 9.4901 2.3950 16 1 4.3108 7.3155 1.3367 17 6 2.0563 -0.7578 1.1966 18 6 3.0341 -1.5528 0.8565 19 6 3.3166 -1.4646 -0.6253 20 6 2.0686 -0.7755 -1.2245 21 1 -0.3633 0.4999 0.8979 22 1 -0.3633 0.5277 -0.8819 23 1 -0.3633 -1.0276 -0.0161 24 1 1.2069 1.9302 1.7537 25 1 3.3601 3.5970 1.0031 26 1 1.9023 4.1393 0.1377 27 1 0.7008 4.3558 2.2957 28 1 2.1583 3.8135 3.1616 29 1 2.8533 6.0229 1.5451 30 1 2.5305 9.5750 4.3096 31 1 1.6765 -0.6521 2.2021 32 1 3.5695 -2.1913 1.5435 33 1 3.4413 -2.4605 -1.0505 34 1 4.2065 -0.8616 -0.8053 35 1 1.3436 -1.5119 -1.5712 36 1 2.3457 -0.0937 -2.0286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132501889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:09 Heat of formation + Delta-G solvation = -35.764990 kcal Electronic energy + Delta-G solvation = -16696.729373 eV Core-core repulsion = 13987.268707 eV Total energy + Delta-G solvation = -2709.460666 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61624 -38.77937 -37.38820 -35.58414 -33.56039 -32.44907 -30.10973 -29.48645 -26.13450 -25.28714 -23.36925 -22.84474 -20.87010 -19.98605 -19.64956 -18.01548 -17.25649 -16.73108 -16.45558 -16.08914 -15.80641 -15.46302 -15.11844 -14.75226 -14.34619 -13.99164 -13.46348 -13.32358 -13.17118 -12.87322 -12.75883 -12.72111 -12.62936 -12.14953 -12.10169 -12.08250 -11.84303 -11.68990 -11.06771 -11.04720 -10.17698 -9.85009 -9.38138 -8.06562 -5.42030 1.18923 1.38163 1.39682 1.46918 1.65276 2.12887 2.45513 3.25303 3.49484 3.60849 3.70460 3.83005 3.98882 4.09248 4.16642 4.31738 4.47065 4.51708 4.57009 4.80601 4.81986 4.92442 4.99159 5.02166 5.06818 5.12626 5.22712 5.33371 5.38815 5.53092 5.71017 5.93408 6.16484 6.50664 7.01660 7.19333 7.76099 7.93828 9.14272 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.045561 B = 0.004465 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.415426 B = 6270.021337 C = 6454.744303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 C 0.523 3.477 4 O -0.584 6.584 5 N -0.709 5.709 6 C 0.122 3.878 7 C 0.151 3.849 8 N -0.759 5.759 9 C -0.239 4.239 10 H 0.064 0.936 11 C -0.058 4.058 12 N -0.979 5.979 13 Si 0.951 3.049 14 H -0.277 1.277 15 H -0.293 1.293 16 H -0.256 1.256 17 C -0.170 4.170 18 C -0.150 4.150 19 C -0.108 4.108 20 C -0.111 4.111 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.415 0.585 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.366 0.634 30 H 0.260 0.740 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.176 -24.214 -9.283 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.059 4.059 3 C 0.311 3.689 4 O -0.464 6.464 5 N -0.361 5.361 6 C -0.003 4.003 7 C 0.025 3.975 8 N -0.406 5.406 9 C -0.370 4.370 10 H 0.082 0.918 11 C -0.250 4.250 12 N -0.629 5.629 13 Si 0.778 3.222 14 H -0.203 1.203 15 H -0.219 1.219 16 H -0.181 1.181 17 C -0.188 4.188 18 C -0.167 4.167 19 C -0.145 4.145 20 C -0.149 4.149 21 H 0.091 0.909 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.252 0.748 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.199 0.801 30 H 0.069 0.931 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.794 -23.868 -9.729 25.837 hybrid contribution 0.524 1.004 -0.128 1.139 sum -1.270 -22.864 -9.857 24.931 Atomic orbital electron populations 1.21824 0.90134 1.04235 1.02895 1.20687 0.98572 0.89674 0.96980 1.21047 0.79124 0.87911 0.80818 1.90654 1.40336 1.78010 1.37406 1.45727 1.53651 1.11864 1.24822 1.21225 0.98630 0.82224 0.98219 1.20823 0.97515 0.83979 0.95218 1.42561 1.62671 1.10345 1.24979 1.19017 1.25817 0.92667 0.99485 0.91782 1.25463 1.02356 0.96591 1.00549 1.69866 1.51532 1.07267 1.34273 0.85467 0.79012 0.78255 0.79419 1.20284 1.21900 1.18071 1.23238 0.99349 0.98050 0.98170 1.23626 0.96961 0.98959 0.97192 1.21442 0.97939 1.01469 0.93617 1.22522 0.97711 0.98733 0.95925 0.90861 0.92606 0.89263 0.74759 0.92549 0.92181 0.93924 0.94164 0.80089 0.93134 0.83254 0.83517 0.88941 0.92301 0.88210 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.41 71.98 0.61 -1.25 16 2 C -0.06 -1.05 0.73 -52.99 -0.04 -1.09 16 3 C 0.52 14.18 6.54 87.66 0.57 14.76 16 4 O -0.58 -20.90 15.44 -3.03 -0.05 -20.95 16 5 N -0.71 -17.85 5.41 -463.05 -2.51 -20.36 16 6 C 0.12 3.87 5.79 86.38 0.50 4.37 16 7 C 0.15 5.46 6.37 86.38 0.55 6.01 16 8 N -0.76 -35.57 5.41 -343.46 -1.86 -37.43 16 9 C -0.24 -13.59 10.47 84.03 0.88 -12.71 16 10 H 0.06 3.92 8.06 -2.91 -0.02 3.89 16 11 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 12 N -0.98 -62.49 13.97 21.65 0.30 -62.19 16 13 Si 0.95 45.85 27.74 68.60 1.90 47.75 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 16 H -0.26 -11.35 6.52 99.48 0.65 -10.70 16 17 C -0.17 -2.66 9.29 26.26 0.24 -2.41 16 18 C -0.15 -2.30 10.78 26.26 0.28 -2.02 16 19 C -0.11 -1.85 6.81 30.53 0.21 -1.64 16 20 C -0.11 -2.06 6.05 31.71 0.19 -1.87 16 21 H 0.07 0.87 7.73 -2.38 -0.02 0.85 16 22 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 23 H 0.09 0.91 8.13 -2.39 -0.02 0.89 16 24 H 0.42 7.93 8.00 -92.71 -0.74 7.19 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.37 16.68 5.53 -92.71 -0.51 16.17 16 30 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.15 1.66 8.06 -2.92 -0.02 1.64 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.36 7.90 -2.39 -0.02 1.34 16 36 H 0.07 1.58 6.91 -2.39 -0.02 1.57 16 Total: -1.00 -72.18 299.13 2.02 -70.16 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.24 Total: 23.79 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 4.46 Total: -0.79 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -4.06 Total: -119.97 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Total: -72.18 2.02 -70.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132501889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.395 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds