Wall clock time and date at job start Sun Mar 29 2020 21:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46920 * 240.00436 * 3 2 1 5 5 H 1.48497 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00511 * 3 2 1 7 7 C 1.38811 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00505 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47591 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 H 1.09003 * 110.67099 * 56.76583 * 15 13 12 17 17 C 1.54890 * 110.75865 * 180.02562 * 15 13 12 18 18 C 1.54263 * 104.19252 * 156.25866 * 17 15 13 19 19 H 1.09002 * 117.41300 * 116.37255 * 18 17 15 20 20 C 1.53003 * 118.19648 * 270.99675 * 18 17 15 21 21 C 1.53877 * 106.60192 * 336.38738 * 18 17 15 22 22 H 1.09000 * 121.33191 * 138.62801 * 21 18 17 23 23 C 1.54266 * 106.59574 * 0.02562 * 21 18 17 24 24 H 0.96995 * 120.00148 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00237 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.46697 * 60.00072 * 10 9 7 27 27 H 1.09000 * 109.46990 * 300.00903 * 10 9 7 28 28 H 1.09004 * 109.47066 * 60.00267 * 11 10 9 29 29 H 1.08994 * 109.46974 * 300.00415 * 11 10 9 30 30 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 31 31 H 1.08999 * 110.48402 * 274.93433 * 17 15 13 32 32 H 1.08997 * 110.48379 * 37.58132 * 17 15 13 33 33 H 1.09007 * 117.46145 * 201.21271 * 20 18 17 34 34 H 1.09001 * 117.46596 * 346.04272 * 20 18 17 35 35 H 1.09005 * 110.48611 * 264.92530 * 23 21 18 36 36 H 1.08999 * 110.48956 * 142.28644 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 7 1.7966 -6.0884 -0.0038 13 6 1.1227 -7.2556 0.0012 14 8 -0.0901 -7.2557 0.0020 15 6 1.8762 -8.5607 0.0057 16 1 2.5533 -8.6112 0.8585 17 6 0.8964 -9.7603 0.0104 18 6 1.7172 -10.9215 -0.5878 19 1 1.9165 -11.7786 0.0554 20 6 1.6995 -11.1124 -2.1057 21 6 2.8302 -10.2817 -1.4361 22 1 3.8474 -10.6732 -1.4248 23 6 2.6473 -8.7541 -1.3233 24 1 -0.4850 0.8400 0.0004 25 1 0.3557 -2.3881 -0.0005 26 1 2.6855 -3.7149 0.8879 27 1 2.6842 -3.7141 -0.8921 28 1 0.4370 -4.7614 -0.8918 29 1 0.4377 -4.7626 0.8881 30 1 2.7666 -6.0884 -0.0041 31 1 0.5874 -9.9965 1.0287 32 1 0.0282 -9.5461 -0.6128 33 1 1.9663 -12.0963 -2.4917 34 1 0.9364 -10.5773 -2.6709 35 1 2.0618 -8.3771 -2.1619 36 1 3.6159 -8.2561 -1.2788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132679218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:20 Heat of formation + Delta-G solvation = -9.527265 kcal Electronic energy + Delta-G solvation = -16338.441605 eV Core-core repulsion = 13630.118692 eV Total energy + Delta-G solvation = -2708.322913 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36555 -38.47930 -35.66422 -33.83742 -32.16375 -31.04837 -28.50522 -27.70232 -24.41996 -23.09657 -21.48333 -21.17464 -19.94334 -19.71362 -17.34501 -16.92425 -16.57903 -15.52914 -15.26675 -14.55927 -14.33455 -13.88314 -13.44987 -13.27178 -13.17955 -13.00703 -12.84168 -11.82102 -11.53941 -11.48679 -11.35220 -11.25616 -11.10085 -10.80856 -10.79689 -10.26543 -10.15281 -10.00200 -9.81259 -9.55544 -8.97752 -8.81152 -6.99829 -5.79646 -3.10532 2.71429 3.23396 3.37193 3.42661 3.47099 3.48478 4.22948 4.37679 4.54670 4.58460 4.83934 4.94880 4.98474 5.13528 5.24751 5.32923 5.48446 5.50028 5.54081 5.56439 5.69342 5.78296 5.86756 5.93659 5.96807 5.97942 6.15526 6.16159 6.50428 6.70624 6.75851 7.64226 7.65229 8.34629 8.38349 9.49092 10.03985 10.38773 11.42919 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.065955 B = 0.003613 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.429028 B = 7748.490535 C = 7973.637644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.722 5.722 13 C 0.516 3.484 14 O -0.541 6.541 15 C -0.113 4.113 16 H 0.103 0.897 17 C -0.078 4.078 18 C -0.163 4.163 19 H 0.109 0.891 20 C -0.155 4.155 21 C -0.168 4.168 22 H 0.113 0.887 23 C -0.085 4.085 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.399 0.601 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.768 -21.695 -1.592 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.014 4.014 12 N -0.373 5.373 13 C 0.302 3.698 14 O -0.418 6.418 15 C -0.135 4.135 16 H 0.121 0.879 17 C -0.116 4.116 18 C -0.181 4.181 19 H 0.127 0.873 20 C -0.192 4.192 21 C -0.186 4.186 22 H 0.131 0.869 23 C -0.122 4.122 24 H 0.067 0.933 25 H 0.220 0.780 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.233 0.767 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.000 -21.525 -1.579 22.401 hybrid contribution 0.716 0.943 0.077 1.187 sum 6.717 -20.582 -1.503 21.702 Atomic orbital electron populations 1.69654 1.05168 1.25987 1.57099 1.24780 0.95560 0.97824 1.02629 0.86220 0.78496 0.83283 0.77869 1.21169 1.21598 1.21184 1.19153 0.91013 0.83887 1.43596 0.91079 1.42188 1.06007 0.99577 1.89712 1.20754 0.93497 0.85708 0.98372 1.21576 0.95464 0.81837 1.02504 1.45962 1.10407 1.06012 1.74945 1.20444 0.88108 0.85186 0.76066 1.90705 1.14016 1.87627 1.49491 1.22494 0.98107 0.92745 1.00109 0.87924 1.21801 0.97240 0.90718 1.01811 1.23277 1.01296 1.00249 0.93302 0.87270 1.23462 1.00406 1.00802 0.94539 1.23587 0.94803 0.93499 1.06720 0.86914 1.21884 1.00282 0.94061 0.96002 0.93288 0.78005 0.95831 0.95827 0.91353 0.91337 0.76696 0.90789 0.89895 0.88431 0.88737 0.90753 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.73 5.60 -59.91 -0.34 -19.06 16 10 C 0.14 2.86 6.37 -4.04 -0.03 2.83 16 11 C 0.11 1.92 5.79 -4.04 -0.02 1.89 16 12 N -0.72 -9.89 5.56 -60.30 -0.33 -10.23 16 13 C 0.52 7.35 7.13 -10.98 -0.08 7.27 16 14 O -0.54 -10.00 15.72 5.55 0.09 -9.91 16 15 C -0.11 -1.15 3.29 -89.79 -0.30 -1.45 16 16 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 17 C -0.08 -0.80 5.70 -25.07 -0.14 -0.95 16 18 C -0.16 -1.36 6.85 -89.50 -0.61 -1.97 16 19 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.16 -1.23 10.21 -25.42 -0.26 -1.49 16 21 C -0.17 -1.33 7.04 -88.19 -0.62 -1.95 16 22 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 23 C -0.08 -0.74 6.08 -25.08 -0.15 -0.90 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.39 10.49 7.67 -40.82 -0.31 10.18 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.40 4.28 8.47 -40.82 -0.35 3.94 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.02 7.43 -51.93 -0.39 0.63 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 302.08 15.07 4.55 4.55 Total: -1.00 -32.65 302.08 -8.45 -41.10 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.66 Total: 8.13 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.46 Total: -4.19 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.05 Total: -57.00 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.65 -8.45 -41.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132679218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.568 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds