Wall clock time and date at job start Sun Mar 29 2020 21:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46920 * 240.00436 * 3 2 1 5 5 H 1.48497 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47169 * 120.00511 * 3 2 1 7 7 C 1.38811 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00505 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47591 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 H 1.09003 * 110.67099 * 56.76583 * 15 13 12 17 17 C 1.54890 * 110.75865 * 180.02562 * 15 13 12 18 18 C 1.54263 * 104.19252 * 156.25866 * 17 15 13 19 19 H 1.09002 * 117.41300 * 116.37255 * 18 17 15 20 20 C 1.53003 * 118.19648 * 270.99675 * 18 17 15 21 21 C 1.53877 * 106.60192 * 336.38738 * 18 17 15 22 22 H 1.09000 * 121.33191 * 138.62801 * 21 18 17 23 23 C 1.54266 * 106.59574 * 0.02562 * 21 18 17 24 24 H 0.96995 * 120.00148 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00237 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.46697 * 60.00072 * 10 9 7 27 27 H 1.09000 * 109.46990 * 300.00903 * 10 9 7 28 28 H 1.09004 * 109.47066 * 60.00267 * 11 10 9 29 29 H 1.08994 * 109.46974 * 300.00415 * 11 10 9 30 30 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 31 31 H 1.08999 * 110.48402 * 274.93433 * 17 15 13 32 32 H 1.08997 * 110.48379 * 37.58132 * 17 15 13 33 33 H 1.09007 * 117.46145 * 201.21271 * 20 18 17 34 34 H 1.09001 * 117.46596 * 346.04272 * 20 18 17 35 35 H 1.09005 * 110.48611 * 264.92530 * 23 21 18 36 36 H 1.08999 * 110.48956 * 142.28644 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 7 1.7966 -6.0884 -0.0038 13 6 1.1227 -7.2556 0.0012 14 8 -0.0901 -7.2557 0.0020 15 6 1.8762 -8.5607 0.0057 16 1 2.5533 -8.6112 0.8585 17 6 0.8964 -9.7603 0.0104 18 6 1.7172 -10.9215 -0.5878 19 1 1.9165 -11.7786 0.0554 20 6 1.6995 -11.1124 -2.1057 21 6 2.8302 -10.2817 -1.4361 22 1 3.8474 -10.6732 -1.4248 23 6 2.6473 -8.7541 -1.3233 24 1 -0.4850 0.8400 0.0004 25 1 0.3557 -2.3881 -0.0005 26 1 2.6855 -3.7149 0.8879 27 1 2.6842 -3.7141 -0.8921 28 1 0.4370 -4.7614 -0.8918 29 1 0.4377 -4.7626 0.8881 30 1 2.7666 -6.0884 -0.0041 31 1 0.5874 -9.9965 1.0287 32 1 0.0282 -9.5461 -0.6128 33 1 1.9663 -12.0963 -2.4917 34 1 0.9364 -10.5773 -2.6709 35 1 2.0618 -8.3771 -2.1619 36 1 3.6159 -8.2561 -1.2788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132679218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:19 Heat of formation + Delta-G solvation = -32.002050 kcal Electronic energy + Delta-G solvation = -16339.416185 eV Core-core repulsion = 13630.118692 eV Total energy + Delta-G solvation = -2709.297493 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35107 -39.43456 -37.30815 -35.51194 -33.39816 -32.60739 -29.54592 -29.06702 -25.96657 -24.48996 -23.04506 -21.99213 -20.86911 -20.52720 -19.32001 -18.07890 -17.30179 -16.93833 -16.55566 -16.45481 -15.57636 -15.23164 -15.05981 -14.76512 -14.19247 -14.01582 -13.93505 -13.08408 -13.04854 -12.64097 -12.59177 -12.56431 -12.26599 -12.16345 -12.09432 -11.99039 -11.86173 -10.98718 -10.97738 -10.83518 -10.52799 -10.15967 -9.08001 -7.97511 -5.29382 1.48166 1.52112 1.57818 1.58261 2.08726 2.57607 2.67724 3.36584 3.42837 3.69741 3.83154 3.97529 4.07034 4.16520 4.19264 4.23278 4.28546 4.45271 4.51278 4.56843 4.65131 4.74751 4.93140 4.99763 5.05792 5.11574 5.14138 5.20093 5.34624 5.37802 5.44732 5.48401 6.23001 6.53450 7.22362 7.29139 8.00858 8.23934 9.26092 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.065955 B = 0.003613 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.429028 B = 7748.490535 C = 7973.637644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.981 3.019 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.084 0.916 9 N -0.748 5.748 10 C 0.150 3.850 11 C 0.126 3.874 12 N -0.709 5.709 13 C 0.514 3.486 14 O -0.590 6.590 15 C -0.104 4.104 16 H 0.131 0.869 17 C -0.083 4.083 18 C -0.164 4.164 19 H 0.127 0.873 20 C -0.161 4.161 21 C -0.160 4.160 22 H 0.135 0.865 23 C -0.085 4.085 24 H 0.253 0.747 25 H 0.373 0.627 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.418 0.582 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.560 -22.836 -1.503 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.383 4.383 8 H 0.102 0.898 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.001 3.999 12 N -0.361 5.361 13 C 0.302 3.698 14 O -0.470 6.470 15 C -0.125 4.125 16 H 0.149 0.851 17 C -0.121 4.121 18 C -0.182 4.182 19 H 0.145 0.855 20 C -0.198 4.198 21 C -0.178 4.178 22 H 0.153 0.847 23 C -0.122 4.122 24 H 0.061 0.939 25 H 0.205 0.795 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.255 0.745 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.871 -22.709 -1.493 24.426 hybrid contribution -0.164 1.217 0.041 1.228 sum 8.707 -21.493 -1.453 23.235 Atomic orbital electron populations 1.69831 1.06902 1.26422 1.59041 1.25692 0.96432 1.01546 1.03233 0.85111 0.77105 0.78504 0.78404 1.20026 1.22307 1.20045 1.19636 0.91773 0.84866 1.41978 0.89825 1.42438 1.05747 1.01154 1.89825 1.20848 0.93551 0.84017 0.99302 1.21138 0.94863 0.82989 1.00863 1.45775 1.11206 1.04611 1.74539 1.21246 0.87743 0.86356 0.74502 1.90689 1.16410 1.88316 1.51577 1.22542 0.98046 0.89756 1.02127 0.85093 1.21798 0.96779 0.91952 1.01567 1.23255 1.01167 1.00097 0.93665 0.85548 1.23544 1.00342 1.01700 0.94215 1.23673 0.95667 0.92547 1.05904 0.84691 1.21920 1.00779 0.95281 0.94254 0.93865 0.79525 0.94371 0.94403 0.93168 0.93054 0.74522 0.90641 0.92781 0.86569 0.90215 0.92611 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 3 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -38.49 5.60 -343.45 -1.92 -40.41 16 10 C 0.15 5.74 6.37 86.38 0.55 6.29 16 11 C 0.13 4.42 5.79 86.38 0.50 4.92 16 12 N -0.71 -18.59 5.56 -463.07 -2.57 -21.16 16 13 C 0.51 14.38 7.13 87.66 0.63 15.00 16 14 O -0.59 -22.45 15.72 -3.04 -0.05 -22.50 16 15 C -0.10 -1.92 3.29 -10.26 -0.03 -1.96 16 16 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 17 C -0.08 -1.65 5.70 31.67 0.18 -1.47 16 18 C -0.16 -2.38 6.85 -10.07 -0.07 -2.45 16 19 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 20 C -0.16 -2.27 10.21 31.44 0.32 -1.95 16 21 C -0.16 -2.06 7.04 -9.22 -0.06 -2.12 16 22 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 23 C -0.08 -1.29 6.08 31.66 0.19 -1.10 16 24 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.37 20.81 7.67 -92.71 -0.71 20.10 16 26 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.42 7.87 8.47 -92.71 -0.79 7.09 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.39 7.43 -2.39 -0.02 1.37 16 33 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.07 8.04 -2.38 -0.02 1.05 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -71.19 302.08 0.85 -70.33 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.42 Total: 27.97 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 3.51 Total: -1.92 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -4.21 Total: -121.66 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.19 0.85 -70.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132679218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.330 kcal (2) G-P(sol) polarization free energy of solvation -71.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds