Wall clock time and date at job start Sun Mar 29 2020 22:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 110.94234 * 2 1 4 4 O 1.21284 * 119.99664 * 123.98547 * 3 2 1 5 5 N 1.34767 * 119.99879 * 303.99184 * 3 2 1 6 6 C 1.46505 * 119.99786 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46886 * 179.97438 * 6 5 3 8 8 N 1.46496 * 109.46876 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99848 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00174 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99749 * 180.02562 * 9 8 7 12 12 N 1.31616 * 119.99984 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99809 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47304 * 59.99832 * 13 11 9 15 15 H 1.48496 * 109.47337 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47216 * 299.99885 * 13 11 9 17 17 C 1.54637 * 111.03861 * 123.98717 * 2 1 3 18 18 C 1.51104 * 104.82203 * 142.72598 * 17 2 1 19 19 C 1.30525 * 111.10650 * 343.50481 * 18 17 2 20 20 C 1.51094 * 111.10287 * 0.02562 * 19 18 17 21 21 H 1.08995 * 109.47261 * 296.00512 * 1 2 3 22 22 H 1.08996 * 109.47124 * 56.01331 * 1 2 3 23 23 H 1.09008 * 109.46829 * 176.00893 * 1 2 3 24 24 H 0.97005 * 120.00111 * 359.97438 * 5 3 2 25 25 H 1.09001 * 109.47103 * 299.99408 * 6 5 3 26 26 H 1.08992 * 109.47209 * 59.99931 * 6 5 3 27 27 H 1.09001 * 109.47029 * 299.99776 * 7 6 5 28 28 H 1.08999 * 109.47298 * 60.00314 * 7 6 5 29 29 H 0.96997 * 120.00121 * 0.02562 * 8 7 6 30 30 H 0.97003 * 119.99738 * 180.02562 * 12 11 9 31 31 H 1.09002 * 110.38719 * 23.85677 * 17 2 1 32 32 H 1.09000 * 110.38599 * 261.59097 * 17 2 1 33 33 H 1.08001 * 124.43953 * 163.48841 * 18 17 2 34 34 H 1.07999 * 124.44678 * 179.97438 * 19 18 17 35 35 H 1.08999 * 110.38926 * 135.24917 * 20 19 18 36 36 H 1.09008 * 110.38956 * 257.50891 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4075 0.0000 4 8 2.8337 1.7639 0.8710 5 7 1.7001 2.2700 -0.9677 6 6 2.2233 3.6385 -0.9674 7 6 1.6530 4.4028 -2.1639 8 7 2.1757 5.7713 -2.1632 9 6 1.8019 6.6475 -3.1470 10 1 1.1215 6.3297 -3.9231 11 6 2.2977 7.9441 -3.1466 12 7 3.1273 8.3312 -2.2010 13 14 1.7873 9.1395 -4.4882 14 1 0.3135 9.3189 -4.4570 15 1 2.4506 10.4489 -4.2632 16 1 2.1924 8.6009 -5.8115 17 6 2.0851 -0.8068 1.1967 18 6 3.3088 -1.5088 0.6553 19 6 3.3106 -1.5106 -0.6499 20 6 2.0888 -0.8097 -1.1967 21 1 -0.3633 0.4506 0.9236 22 1 -0.3633 0.5744 -0.8521 23 1 -0.3633 -1.0253 -0.0715 24 1 1.0884 1.9848 -1.6644 25 1 1.9318 4.1387 -0.0438 26 1 3.3106 3.6117 -1.0386 27 1 1.9448 3.9025 -3.0872 28 1 0.5656 4.4296 -2.0931 29 1 2.7871 6.0566 -1.4663 30 1 3.4734 9.2374 -2.2006 31 1 1.3493 -1.5351 1.5377 32 1 2.3609 -0.1369 2.0111 33 1 4.0807 -1.9506 1.2681 34 1 4.0843 -1.9542 -1.2591 35 1 2.3674 -0.1408 -2.0109 36 1 1.3545 -1.5387 -1.5396 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133327525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:14 Heat of formation + Delta-G solvation = -15.752922 kcal Electronic energy + Delta-G solvation = -16639.747017 eV Core-core repulsion = 13931.154140 eV Total energy + Delta-G solvation = -2708.592878 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53592 -37.69994 -35.61315 -33.88400 -32.10649 -31.00344 -28.43724 -27.60147 -25.75203 -23.91535 -22.25856 -21.41039 -19.22828 -19.02331 -17.36697 -16.87625 -15.98056 -15.49257 -15.13901 -14.55557 -14.32301 -13.84264 -13.30786 -13.18961 -13.00619 -12.84699 -12.73547 -12.31882 -12.26729 -11.56388 -11.32050 -11.31297 -11.09963 -10.88647 -10.79382 -10.76954 -10.14852 -9.82559 -9.60337 -9.04587 -8.95548 -8.78475 -6.99336 -5.79215 -3.10042 2.14747 2.76105 3.27663 3.42925 3.47334 3.48719 4.23928 4.44077 4.56306 4.64258 4.91407 5.08209 5.19660 5.39268 5.46045 5.50496 5.52723 5.56563 5.59234 5.73109 5.79204 5.81463 5.90832 5.97548 5.98760 6.16908 6.39477 6.51706 6.71207 6.74836 6.77126 7.65247 7.66626 8.36811 8.39238 9.49517 10.04451 10.39281 11.43329 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052913 B = 0.004041 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.045978 B = 6927.274863 C = 7031.866714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C 0.526 3.474 4 O -0.537 6.537 5 N -0.721 5.721 6 C 0.111 3.889 7 C 0.145 3.855 8 N -0.730 5.730 9 C -0.245 4.245 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.931 5.931 13 Si 0.911 3.089 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.285 1.285 17 C -0.085 4.085 18 C -0.153 4.153 19 C -0.177 4.177 20 C -0.086 4.086 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.398 0.602 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.386 0.614 30 H 0.257 0.743 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 -20.988 3.380 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C 0.311 3.689 4 O -0.414 6.414 5 N -0.373 5.373 6 C -0.013 4.013 7 C 0.017 3.983 8 N -0.375 5.375 9 C -0.376 4.376 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.741 3.259 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.212 1.212 17 C -0.122 4.122 18 C -0.171 4.171 19 C -0.195 4.195 20 C -0.124 4.124 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.232 0.768 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.220 0.780 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.237 -20.607 3.868 21.390 hybrid contribution -0.220 0.696 -0.896 1.156 sum -4.457 -19.911 2.971 20.619 Atomic orbital electron populations 1.21780 0.91773 1.02799 1.02908 1.21688 0.96937 0.92573 0.98092 1.20172 0.80915 0.86433 0.81353 1.90686 1.35295 1.78309 1.37083 1.45903 1.49227 1.12905 1.29234 1.21576 0.99149 0.80347 1.00218 1.20753 0.96366 0.87185 0.94009 1.42185 1.56102 1.06518 1.32659 1.19152 1.22814 0.91834 1.03841 0.91090 1.24777 0.99736 0.97497 0.98749 1.69660 1.35427 1.18420 1.34383 0.86222 0.77905 0.80471 0.81283 1.21180 1.21598 1.21188 1.21357 0.95434 0.97809 0.97618 1.23240 0.98187 0.99472 0.96214 1.23193 0.98506 1.01462 0.96327 1.21484 0.96129 0.98081 0.96679 0.91697 0.91756 0.91312 0.76757 0.91329 0.91375 0.95851 0.95830 0.78004 0.93302 0.90097 0.89331 0.85791 0.85751 0.90659 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.43 37.16 0.31 -0.79 16 2 C -0.09 -0.96 0.85 -153.78 -0.13 -1.09 16 3 C 0.53 7.77 6.52 -10.99 -0.07 7.70 16 4 O -0.54 -10.18 15.53 5.55 0.09 -10.10 16 5 N -0.72 -10.17 5.39 -60.29 -0.32 -10.50 16 6 C 0.11 1.96 5.79 -4.03 -0.02 1.93 16 7 C 0.15 2.88 6.37 -4.04 -0.03 2.85 16 8 N -0.73 -18.76 5.60 -59.91 -0.34 -19.10 16 9 C -0.25 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 13 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 C -0.09 -0.90 5.71 -26.82 -0.15 -1.06 16 18 C -0.15 -1.60 10.78 -35.70 -0.38 -1.98 16 19 C -0.18 -1.78 10.78 -35.70 -0.38 -2.16 16 20 C -0.09 -0.81 5.93 -26.68 -0.16 -0.97 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.48 7.37 -51.93 -0.38 0.09 16 23 H 0.07 0.44 8.06 -51.92 -0.42 0.02 16 24 H 0.40 4.47 7.70 -40.82 -0.31 4.16 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.39 10.52 7.67 -40.82 -0.31 10.21 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 32 H 0.09 1.12 7.01 -51.93 -0.36 0.76 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 36 H 0.09 0.63 7.84 -51.92 -0.41 0.22 16 LS Contribution 301.47 15.07 4.54 4.54 Total: -1.00 -33.01 301.47 -7.12 -40.13 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.52 Total: 8.43 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.27 Total: -3.03 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.06 Total: -57.31 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.01 -7.12 -40.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133327525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.379 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds