Wall clock time and date at job start Sun Mar 29 2020 22:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 110.94234 * 2 1 4 4 O 1.21284 * 119.99664 * 123.98547 * 3 2 1 5 5 N 1.34767 * 119.99879 * 303.99184 * 3 2 1 6 6 C 1.46505 * 119.99786 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46886 * 179.97438 * 6 5 3 8 8 N 1.46496 * 109.46876 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99848 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00174 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99749 * 180.02562 * 9 8 7 12 12 N 1.31616 * 119.99984 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99809 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47304 * 59.99832 * 13 11 9 15 15 H 1.48496 * 109.47337 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47216 * 299.99885 * 13 11 9 17 17 C 1.54637 * 111.03861 * 123.98717 * 2 1 3 18 18 C 1.51104 * 104.82203 * 142.72598 * 17 2 1 19 19 C 1.30525 * 111.10650 * 343.50481 * 18 17 2 20 20 C 1.51094 * 111.10287 * 0.02562 * 19 18 17 21 21 H 1.08995 * 109.47261 * 296.00512 * 1 2 3 22 22 H 1.08996 * 109.47124 * 56.01331 * 1 2 3 23 23 H 1.09008 * 109.46829 * 176.00893 * 1 2 3 24 24 H 0.97005 * 120.00111 * 359.97438 * 5 3 2 25 25 H 1.09001 * 109.47103 * 299.99408 * 6 5 3 26 26 H 1.08992 * 109.47209 * 59.99931 * 6 5 3 27 27 H 1.09001 * 109.47029 * 299.99776 * 7 6 5 28 28 H 1.08999 * 109.47298 * 60.00314 * 7 6 5 29 29 H 0.96997 * 120.00121 * 0.02562 * 8 7 6 30 30 H 0.97003 * 119.99738 * 180.02562 * 12 11 9 31 31 H 1.09002 * 110.38719 * 23.85677 * 17 2 1 32 32 H 1.09000 * 110.38599 * 261.59097 * 17 2 1 33 33 H 1.08001 * 124.43953 * 163.48841 * 18 17 2 34 34 H 1.07999 * 124.44678 * 179.97438 * 19 18 17 35 35 H 1.08999 * 110.38926 * 135.24917 * 20 19 18 36 36 H 1.09008 * 110.38956 * 257.50891 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4075 0.0000 4 8 2.8337 1.7639 0.8710 5 7 1.7001 2.2700 -0.9677 6 6 2.2233 3.6385 -0.9674 7 6 1.6530 4.4028 -2.1639 8 7 2.1757 5.7713 -2.1632 9 6 1.8019 6.6475 -3.1470 10 1 1.1215 6.3297 -3.9231 11 6 2.2977 7.9441 -3.1466 12 7 3.1273 8.3312 -2.2010 13 14 1.7873 9.1395 -4.4882 14 1 0.3135 9.3189 -4.4570 15 1 2.4506 10.4489 -4.2632 16 1 2.1924 8.6009 -5.8115 17 6 2.0851 -0.8068 1.1967 18 6 3.3088 -1.5088 0.6553 19 6 3.3106 -1.5106 -0.6499 20 6 2.0888 -0.8097 -1.1967 21 1 -0.3633 0.4506 0.9236 22 1 -0.3633 0.5744 -0.8521 23 1 -0.3633 -1.0253 -0.0715 24 1 1.0884 1.9848 -1.6644 25 1 1.9318 4.1387 -0.0438 26 1 3.3106 3.6117 -1.0386 27 1 1.9448 3.9025 -3.0872 28 1 0.5656 4.4296 -2.0931 29 1 2.7871 6.0566 -1.4663 30 1 3.4734 9.2374 -2.2006 31 1 1.3493 -1.5351 1.5377 32 1 2.3609 -0.1369 2.0111 33 1 4.0807 -1.9506 1.2681 34 1 4.0843 -1.9542 -1.2591 35 1 2.3674 -0.1408 -2.0109 36 1 1.3545 -1.5387 -1.5396 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133327525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:13 Heat of formation + Delta-G solvation = -38.843476 kcal Electronic energy + Delta-G solvation = -16640.748299 eV Core-core repulsion = 13931.154140 eV Total energy + Delta-G solvation = -2709.594159 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58019 -38.74728 -37.25133 -35.55218 -33.40146 -32.49751 -29.55382 -28.94653 -26.50909 -25.73019 -23.65879 -22.88781 -20.34747 -19.81357 -19.29736 -17.95767 -17.17547 -16.71956 -16.51222 -16.27503 -15.60855 -15.17081 -15.07197 -14.81589 -13.95723 -13.78130 -13.59938 -13.21399 -13.08596 -13.04048 -13.01435 -12.63786 -12.55056 -12.18685 -12.12337 -12.07389 -11.87000 -11.60710 -10.98382 -10.85055 -10.17719 -9.78442 -9.07812 -7.97138 -5.29029 1.37982 1.48483 1.52371 1.58529 1.60039 2.07402 2.58004 3.37021 3.43221 3.61708 3.73757 3.98924 4.07527 4.18096 4.19215 4.35154 4.49461 4.55422 4.71785 4.78356 4.83588 4.95027 4.95974 5.04883 5.06219 5.11166 5.14501 5.30914 5.37465 5.48275 5.64539 5.98301 6.23173 6.52897 7.22192 7.29440 8.00896 8.24196 9.26427 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052913 B = 0.004041 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.045978 B = 6927.274863 C = 7031.866714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C 0.521 3.479 4 O -0.586 6.586 5 N -0.709 5.709 6 C 0.128 3.872 7 C 0.150 3.850 8 N -0.748 5.748 9 C -0.251 4.251 10 H 0.084 0.916 11 C -0.076 4.076 12 N -0.972 5.972 13 Si 0.981 3.019 14 H -0.274 1.274 15 H -0.297 1.297 16 H -0.275 1.275 17 C -0.087 4.087 18 C -0.172 4.172 19 C -0.182 4.182 20 C -0.084 4.084 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.416 0.584 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.373 0.627 30 H 0.252 0.748 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.073 0.927 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.413 -22.655 1.804 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C 0.308 3.692 4 O -0.465 6.465 5 N -0.361 5.361 6 C 0.003 3.997 7 C 0.023 3.977 8 N -0.391 5.391 9 C -0.383 4.383 10 H 0.102 0.898 11 C -0.268 4.268 12 N -0.622 5.622 13 Si 0.808 3.192 14 H -0.200 1.200 15 H -0.223 1.223 16 H -0.201 1.201 17 C -0.124 4.124 18 C -0.190 4.190 19 C -0.200 4.200 20 C -0.121 4.121 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.114 0.886 24 H 0.253 0.747 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.205 0.795 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.091 0.909 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.982 -22.336 2.253 23.232 hybrid contribution 0.311 1.129 -0.375 1.230 sum -5.672 -21.207 1.878 22.032 Atomic orbital electron populations 1.21829 0.89412 1.04742 1.03056 1.21728 0.98609 0.89451 0.98971 1.21044 0.79933 0.87955 0.80225 1.90668 1.37499 1.79471 1.38895 1.45722 1.49232 1.11338 1.29819 1.21138 0.97964 0.82042 0.98581 1.20842 0.96843 0.84788 0.95200 1.42430 1.56158 1.08588 1.31943 1.19632 1.22142 0.92341 1.04141 0.89837 1.25683 1.00300 0.99533 1.01282 1.69837 1.37209 1.18511 1.36608 0.85115 0.77803 0.77596 0.78636 1.20027 1.22305 1.20064 1.21400 0.96363 0.97816 0.96806 1.23414 0.98624 1.00197 0.96782 1.23467 0.99053 1.01095 0.96369 1.21559 0.96531 0.98332 0.95697 0.92419 0.90705 0.88599 0.74695 0.93031 0.93251 0.94453 0.94332 0.79531 0.93883 0.87601 0.92104 0.85181 0.84552 0.90882 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.43 71.98 0.61 -1.15 16 2 C -0.08 -1.64 0.85 -51.71 -0.04 -1.68 16 3 C 0.52 15.12 6.52 87.66 0.57 15.69 16 4 O -0.59 -22.79 15.53 -3.04 -0.05 -22.84 16 5 N -0.71 -19.19 5.39 -463.05 -2.50 -21.69 16 6 C 0.13 4.52 5.79 86.38 0.50 5.02 16 7 C 0.15 5.79 6.37 86.38 0.55 6.34 16 8 N -0.75 -38.52 5.60 -343.44 -1.92 -40.45 16 9 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 10 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 11 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 12 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 13 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 C -0.09 -1.74 5.71 30.53 0.17 -1.57 16 18 C -0.17 -3.41 10.78 26.26 0.28 -3.12 16 19 C -0.18 -3.30 10.78 26.26 0.28 -3.01 16 20 C -0.08 -1.33 5.93 30.63 0.18 -1.15 16 21 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.07 0.84 7.37 -2.39 -0.02 0.82 16 23 H 0.10 0.79 8.06 -2.38 -0.02 0.78 16 24 H 0.42 8.32 7.70 -92.70 -0.71 7.61 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.37 20.85 7.67 -92.71 -0.71 20.14 16 30 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.11 1.54 7.89 -2.39 -0.02 1.52 16 32 H 0.06 1.57 7.01 -2.39 -0.02 1.56 16 33 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.07 1.21 7.86 -2.39 -0.02 1.19 16 36 H 0.12 1.18 7.84 -2.38 -0.02 1.16 16 Total: -1.00 -71.83 301.47 1.91 -69.92 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.35 Total: 28.99 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 4.41 Total: -1.65 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -4.14 Total: -122.17 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -71.83 1.91 -69.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133327525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.079 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds