Wall clock time and date at job start Sun Mar 29 2020 22:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47344 * 2 1 4 4 C 1.53000 * 109.47376 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47145 * 181.23005 * 4 3 2 6 6 C 1.46900 * 110.99805 * 287.95839 * 5 4 3 7 7 C 1.50693 * 109.46952 * 170.00162 * 6 5 4 8 8 H 1.08010 * 120.00224 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00302 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99441 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00242 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46868 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46756 * 119.99718 * 11 9 7 14 14 H 1.48498 * 109.46886 * 239.99726 * 11 9 7 15 15 C 1.46897 * 110.99751 * 164.00400 * 5 4 3 16 16 C 1.50698 * 109.47410 * 287.76610 * 15 5 4 17 17 C 1.34331 * 126.44082 * 92.75535 * 16 15 5 18 18 N 1.34479 * 107.66835 * 180.02562 * 17 16 15 19 19 C 1.30254 * 108.70012 * 0.02562 * 18 17 16 20 20 O 1.33967 * 108.76022 * 0.22459 * 19 18 17 21 21 H 1.09002 * 109.47604 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47544 * 300.00045 * 1 2 3 23 23 H 1.09003 * 109.47586 * 59.99930 * 1 2 3 24 24 H 1.09002 * 109.47514 * 240.00485 * 2 1 3 25 25 H 1.08996 * 109.47585 * 120.00463 * 2 1 3 26 26 H 1.08997 * 109.46735 * 60.00161 * 3 2 1 27 27 H 1.09002 * 109.47070 * 300.00031 * 3 2 1 28 28 H 1.08994 * 109.46882 * 61.22352 * 4 3 2 29 29 H 1.09004 * 109.46803 * 301.22850 * 4 3 2 30 30 H 1.08996 * 109.46857 * 290.00095 * 6 5 4 31 31 H 1.09002 * 109.47133 * 50.00090 * 6 5 4 32 32 H 0.97003 * 119.99574 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.46826 * 167.76662 * 15 5 4 34 34 H 1.09004 * 109.47353 * 47.77195 * 15 5 4 35 35 H 1.07996 * 126.16861 * 0.05802 * 17 16 15 36 36 H 1.08001 * 125.61892 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8272 0.0291 6 6 3.8359 3.4925 -1.2614 7 6 4.1196 4.9660 -1.1227 8 1 4.4342 5.3682 -0.1709 9 6 3.9765 5.8010 -2.2105 10 7 3.5929 5.3114 -3.3692 11 14 4.3275 7.6277 -2.0383 12 1 4.7395 7.9231 -0.6426 13 1 5.4189 8.0118 -2.9691 14 1 3.1024 8.4001 -2.3664 15 6 5.4782 2.8758 0.4076 16 6 5.6183 2.5564 1.8736 17 6 5.8433 1.3449 2.4083 18 7 5.9007 1.4924 3.7438 19 6 5.7178 2.7491 4.0334 20 8 5.5349 3.4313 2.8950 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.9329 0.9480 -0.9016 29 1 3.9336 0.9096 0.8779 30 1 4.5005 3.0635 -2.0113 31 1 2.8001 3.3493 -1.5692 32 1 3.4926 5.8988 -4.1346 33 1 5.8719 3.8737 0.2139 34 1 6.0359 2.1452 -0.1784 35 1 5.9581 0.4193 1.8639 36 1 5.7103 3.1708 5.0276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140931830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:01 Heat of formation + Delta-G solvation = 11.981665 kcal Electronic energy + Delta-G solvation = -17043.621087 eV Core-core repulsion = 14336.230871 eV Total energy + Delta-G solvation = -2707.390216 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.97327 -37.37658 -34.40672 -34.36644 -32.65922 -30.69813 -28.77366 -26.86847 -24.96618 -22.97337 -22.27570 -21.55676 -20.66710 -19.82843 -17.25215 -16.63293 -16.17478 -15.26590 -14.89968 -14.63258 -14.31711 -13.85263 -13.79257 -13.31206 -12.98586 -12.60935 -12.18026 -12.06088 -11.55017 -11.43183 -11.08163 -11.01883 -10.82562 -10.75657 -10.60390 -10.47080 -10.21271 -10.13110 -9.77668 -9.26734 -8.54652 -8.46895 -7.41324 -6.08853 -4.10584 1.80808 2.96115 3.13091 3.27801 3.35789 3.40907 4.38125 4.48216 4.77237 5.19607 5.24332 5.28019 5.36675 5.41134 5.45550 5.63147 5.69960 5.93868 6.00991 6.01801 6.11087 6.15335 6.19264 6.25688 6.38233 6.48940 6.58882 6.67335 6.79219 7.17134 7.23075 7.73248 7.95733 7.98421 8.07560 8.44033 8.97409 9.54339 11.01782 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.008490 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.809065 B = 3297.046317 C = 4836.116978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.051 3.949 5 N -0.534 5.534 6 C 0.193 3.807 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.134 3.866 16 C 0.003 3.997 17 C -0.063 4.063 18 N -0.491 5.491 19 C 0.148 3.852 20 O -0.192 6.192 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.060 0.940 30 H -0.006 1.006 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.176 0.824 36 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 -7.694 8.557 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.078 4.078 5 N -0.258 5.258 6 C 0.069 3.931 7 C -0.551 4.551 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.724 3.276 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.005 3.995 16 C -0.052 4.052 17 C -0.202 4.202 18 N -0.221 5.221 19 C -0.078 4.078 20 O -0.077 6.077 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.011 0.989 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.193 0.807 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.523 -7.787 9.154 12.029 hybrid contribution 0.446 1.039 -1.000 1.509 sum 0.969 -6.748 8.153 10.628 Atomic orbital electron populations 1.21749 0.96153 1.00902 1.01929 1.21493 0.95646 0.97519 1.01358 1.21557 0.94974 0.95474 1.03027 1.22143 0.95763 0.90498 0.99348 1.62039 1.14005 1.14134 1.35657 1.19805 0.97225 0.93641 0.82436 1.21217 1.45484 0.92157 0.96239 0.91739 1.24975 0.95285 0.98985 0.95174 1.69964 1.47382 1.35457 1.00792 0.86464 0.77905 0.85037 0.78206 1.19602 1.21055 1.20965 1.20468 0.91933 1.04029 0.83054 1.23899 1.01859 0.88143 0.91313 1.22939 1.09032 0.98464 0.89774 1.70348 1.18273 1.18278 1.15154 1.27887 1.01842 0.86530 0.91544 1.84495 1.67547 1.40059 1.15605 0.93299 0.92883 0.92661 0.92392 0.92556 0.91720 0.91308 0.95531 0.92163 0.98857 0.94213 0.92899 0.87459 0.92237 0.80670 0.74128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.15 0.37 -1.46 16 2 C -0.12 -1.65 5.93 -26.73 -0.16 -1.80 16 3 C -0.11 -1.88 5.25 -26.73 -0.14 -2.02 16 4 C 0.05 0.89 4.81 -3.82 -0.02 0.88 16 5 N -0.53 -11.11 4.40 -237.52 -1.04 -12.15 16 6 C 0.19 4.81 4.57 -4.98 -0.02 4.78 16 7 C -0.51 -13.95 8.28 -34.44 -0.29 -14.23 16 8 H 0.06 1.76 7.26 -52.48 -0.38 1.38 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -25.96 13.29 55.43 0.74 -25.23 16 11 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.13 2.50 5.37 -4.98 -0.03 2.47 16 16 C 0.00 0.04 6.42 -35.69 -0.23 -0.18 16 17 C -0.06 -1.00 10.46 -17.77 -0.19 -1.18 16 18 N -0.49 -7.75 11.29 -14.97 -0.17 -7.92 16 19 C 0.15 2.06 13.23 52.09 0.69 2.75 16 20 O -0.19 -3.30 10.77 5.38 0.06 -3.24 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.28 6.65 -51.93 -0.35 0.94 16 28 H 0.03 0.46 8.05 -51.93 -0.42 0.05 16 29 H 0.06 0.98 6.09 -51.93 -0.32 0.66 16 30 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 31 H 0.04 1.06 6.43 -51.93 -0.33 0.72 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.11 2.20 6.59 -51.93 -0.34 1.86 16 34 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 35 H 0.18 2.36 8.01 -52.49 -0.42 1.94 16 36 H 0.24 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -30.42 300.77 -6.50 -36.92 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.49 Total: -0.66 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.11 Total: -8.50 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.48 Total: -45.30 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: 0.06 Total: -3.24 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.42 -6.50 -36.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140931830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.903 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds