Wall clock time and date at job start Sun Mar 29 2020 22:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47344 * 2 1 4 4 C 1.53000 * 109.47376 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47145 * 181.23005 * 4 3 2 6 6 C 1.46900 * 110.99805 * 287.95839 * 5 4 3 7 7 C 1.50693 * 109.46952 * 170.00162 * 6 5 4 8 8 H 1.08010 * 120.00224 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00302 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99441 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00242 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46868 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46756 * 119.99718 * 11 9 7 14 14 H 1.48498 * 109.46886 * 239.99726 * 11 9 7 15 15 C 1.46897 * 110.99751 * 164.00400 * 5 4 3 16 16 C 1.50698 * 109.47410 * 287.76610 * 15 5 4 17 17 C 1.34331 * 126.44082 * 92.75535 * 16 15 5 18 18 N 1.34479 * 107.66835 * 180.02562 * 17 16 15 19 19 C 1.30254 * 108.70012 * 0.02562 * 18 17 16 20 20 O 1.33967 * 108.76022 * 0.22459 * 19 18 17 21 21 H 1.09002 * 109.47604 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47544 * 300.00045 * 1 2 3 23 23 H 1.09003 * 109.47586 * 59.99930 * 1 2 3 24 24 H 1.09002 * 109.47514 * 240.00485 * 2 1 3 25 25 H 1.08996 * 109.47585 * 120.00463 * 2 1 3 26 26 H 1.08997 * 109.46735 * 60.00161 * 3 2 1 27 27 H 1.09002 * 109.47070 * 300.00031 * 3 2 1 28 28 H 1.08994 * 109.46882 * 61.22352 * 4 3 2 29 29 H 1.09004 * 109.46803 * 301.22850 * 4 3 2 30 30 H 1.08996 * 109.46857 * 290.00095 * 6 5 4 31 31 H 1.09002 * 109.47133 * 50.00090 * 6 5 4 32 32 H 0.97003 * 119.99574 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.46826 * 167.76662 * 15 5 4 34 34 H 1.09004 * 109.47353 * 47.77195 * 15 5 4 35 35 H 1.07996 * 126.16861 * 0.05802 * 17 16 15 36 36 H 1.08001 * 125.61892 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8272 0.0291 6 6 3.8359 3.4925 -1.2614 7 6 4.1196 4.9660 -1.1227 8 1 4.4342 5.3682 -0.1709 9 6 3.9765 5.8010 -2.2105 10 7 3.5929 5.3114 -3.3692 11 14 4.3275 7.6277 -2.0383 12 1 4.7395 7.9231 -0.6426 13 1 5.4189 8.0118 -2.9691 14 1 3.1024 8.4001 -2.3664 15 6 5.4782 2.8758 0.4076 16 6 5.6183 2.5564 1.8736 17 6 5.8433 1.3449 2.4083 18 7 5.9007 1.4924 3.7438 19 6 5.7178 2.7491 4.0334 20 8 5.5349 3.4313 2.8950 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.9329 0.9480 -0.9016 29 1 3.9336 0.9096 0.8779 30 1 4.5005 3.0635 -2.0113 31 1 2.8001 3.3493 -1.5692 32 1 3.4926 5.8988 -4.1346 33 1 5.8719 3.8737 0.2139 34 1 6.0359 2.1452 -0.1784 35 1 5.9581 0.4193 1.8639 36 1 5.7103 3.1708 5.0276 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140931830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:01 Heat of formation + Delta-G solvation = -9.614233 kcal Electronic energy + Delta-G solvation = -17044.557555 eV Core-core repulsion = 14336.230871 eV Total energy + Delta-G solvation = -2708.326684 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.19797 -38.95917 -35.72825 -35.59581 -34.66663 -32.07223 -30.27934 -28.55542 -26.44653 -24.64198 -23.52318 -22.89220 -21.90806 -21.38653 -18.64264 -18.41826 -17.56530 -16.84211 -16.34067 -16.25102 -15.75504 -15.36621 -15.10433 -14.63200 -14.20627 -14.10562 -13.86640 -13.41793 -13.34083 -12.90334 -12.76064 -12.56537 -12.30797 -12.19330 -12.12603 -11.75679 -11.72041 -11.49968 -11.31368 -11.23219 -10.61979 -9.78128 -9.09863 -8.21698 -6.30915 0.58009 1.39553 1.41078 1.53923 1.77815 1.95626 2.39563 3.10916 3.26379 3.48175 3.91652 4.01866 4.12672 4.16814 4.27574 4.32088 4.44926 4.61472 4.65548 4.79576 4.89130 4.93306 4.98760 5.06864 5.12924 5.17369 5.28119 5.30139 5.41383 5.47686 5.49464 5.64764 6.04447 6.24365 6.56612 6.78820 6.84532 7.38654 8.89261 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.008490 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.809065 B = 3297.046317 C = 4836.116978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.108 4.108 4 C 0.053 3.947 5 N -0.544 5.544 6 C 0.211 3.789 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.963 3.037 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.139 3.861 16 C -0.028 4.028 17 C -0.047 4.047 18 N -0.516 5.516 19 C 0.171 3.829 20 O -0.215 6.215 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.027 0.973 29 H 0.080 0.920 30 H -0.030 1.030 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.196 0.804 36 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 -8.168 10.303 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.146 4.146 4 C -0.075 4.075 5 N -0.269 5.269 6 C 0.085 3.915 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.192 4.192 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.191 1.191 13 H -0.202 1.202 14 H -0.205 1.205 15 C 0.011 3.989 16 C -0.081 4.081 17 C -0.186 4.186 18 N -0.245 5.245 19 C -0.055 4.055 20 O -0.101 6.101 21 H 0.089 0.911 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.099 0.901 30 H -0.012 1.012 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.213 0.787 36 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges 0.836 -8.286 10.911 13.726 hybrid contribution 0.369 1.146 -1.436 1.874 sum 1.205 -7.140 9.475 11.925 Atomic orbital electron populations 1.21745 0.95116 1.02221 1.01561 1.21449 0.96547 0.95014 1.02313 1.21514 0.94445 0.97568 1.01077 1.22212 0.96222 0.88817 1.00200 1.61947 1.15879 1.16056 1.33026 1.19396 0.95030 0.93129 0.83906 1.21480 1.45284 0.93494 0.96048 0.92320 1.25820 0.95004 1.03576 0.94795 1.70074 1.48330 1.37151 1.01554 0.85419 0.77906 0.79445 0.78389 1.19057 1.20228 1.20491 1.20293 0.90582 1.03095 0.84938 1.23510 1.05132 0.88885 0.90621 1.23231 1.06832 0.98479 0.90008 1.70421 1.19860 1.19270 1.14900 1.29085 0.98209 0.85947 0.92214 1.84483 1.68195 1.40894 1.16506 0.91101 0.92819 0.93545 0.91874 0.91050 0.92742 0.94125 0.95442 0.90146 1.01236 0.96657 0.92644 0.90026 0.90724 0.78695 0.69327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.12 -2.95 5.93 30.59 0.18 -2.77 16 3 C -0.11 -3.64 5.25 30.60 0.16 -3.48 16 4 C 0.05 1.86 4.81 86.30 0.42 2.28 16 5 N -0.54 -23.15 4.40 -905.38 -3.98 -27.13 16 6 C 0.21 10.95 4.57 85.55 0.39 11.34 16 7 C -0.52 -29.37 8.28 25.60 0.21 -29.15 16 8 H 0.06 3.29 7.26 -2.91 -0.02 3.26 16 9 C 0.01 0.37 5.46 84.66 0.46 0.83 16 10 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 11 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 15 C 0.14 5.27 5.37 85.56 0.46 5.73 16 16 C -0.03 -0.93 6.42 24.79 0.16 -0.77 16 17 C -0.05 -1.39 10.46 83.39 0.87 -0.52 16 18 N -0.52 -14.86 11.29 -316.07 -3.57 -18.43 16 19 C 0.17 4.25 13.23 130.48 1.73 5.97 16 20 O -0.21 -7.06 10.77 -3.67 -0.04 -7.10 16 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 27 H 0.04 1.58 6.65 -2.39 -0.02 1.56 16 28 H 0.03 0.96 8.05 -2.39 -0.02 0.94 16 29 H 0.08 2.49 6.09 -2.39 -0.01 2.48 16 30 H -0.03 -1.67 8.12 -2.39 -0.02 -1.69 16 31 H 0.02 0.86 6.43 -2.39 -0.02 0.85 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.08 3.47 6.59 -2.38 -0.02 3.45 16 34 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 35 H 0.20 4.74 8.01 -2.91 -0.02 4.72 16 36 H 0.29 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -66.38 300.77 1.52 -64.86 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.05 Total: 9.79 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 5.75 Total: -13.25 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -7.27 Total: -100.38 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.04 Total: -7.10 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -66.38 1.52 -64.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140931830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.247 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds