Wall clock time and date at job start Sun Mar 29 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 C 1.53000 * 109.47079 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47167 * 179.59975 * 4 3 2 6 6 C 1.46891 * 111.00301 * 298.09886 * 5 4 3 7 7 C 1.50705 * 109.47117 * 292.95511 * 6 5 4 8 8 H 1.08002 * 119.99860 * 354.94848 * 7 6 5 9 9 C 1.37879 * 120.00180 * 174.96280 * 7 6 5 10 10 N 1.31515 * 119.99662 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99940 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47183 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47213 * 119.99354 * 11 9 7 14 14 H 1.48504 * 109.46744 * 239.99484 * 11 9 7 15 15 C 1.46903 * 110.99757 * 62.05530 * 5 4 3 16 16 C 1.50701 * 109.47402 * 66.04507 * 15 5 4 17 17 N 1.30250 * 125.61913 * 90.00270 * 16 15 5 18 18 C 1.34480 * 108.70022 * 179.97438 * 17 16 15 19 19 C 1.34327 * 107.66762 * 359.97438 * 18 17 16 20 20 O 1.33964 * 125.61712 * 269.69063 * 16 15 5 21 21 H 1.08997 * 109.47346 * 60.00387 * 1 2 3 22 22 H 1.09003 * 109.47046 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47013 * 300.00468 * 1 2 3 24 24 H 1.08999 * 109.47462 * 239.99281 * 2 1 3 25 25 H 1.09006 * 109.46824 * 119.99870 * 2 1 3 26 26 H 1.08992 * 109.47116 * 59.99829 * 3 2 1 27 27 H 1.08997 * 109.46770 * 299.99212 * 3 2 1 28 28 H 1.09005 * 109.47519 * 59.59883 * 4 3 2 29 29 H 1.08998 * 109.47031 * 299.60427 * 4 3 2 30 30 H 1.09006 * 109.47181 * 52.94749 * 6 5 4 31 31 H 1.09000 * 109.47692 * 172.95077 * 6 5 4 32 32 H 0.97006 * 119.99508 * 180.02562 * 10 9 7 33 33 H 1.08999 * 109.46662 * 186.04854 * 15 5 4 34 34 H 1.09000 * 109.46795 * 306.04510 * 15 5 4 35 35 H 1.08002 * 126.16797 * 180.02562 * 18 17 16 36 36 H 1.08002 * 126.44624 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8274 -0.0103 6 6 3.6257 3.5308 -1.2247 7 6 4.3045 2.9247 -2.4260 8 1 5.0503 2.1549 -2.2936 9 6 3.9734 3.3531 -3.6940 10 7 3.0650 4.2903 -3.8552 11 14 4.8153 2.6022 -5.1829 12 1 5.7912 1.5766 -4.7349 13 1 3.7979 1.9685 -6.0596 14 1 5.5263 3.6652 -5.9378 15 6 3.6297 3.5462 1.1965 16 6 4.2935 2.9397 2.4059 17 7 5.4400 3.3046 2.9048 18 6 5.7063 2.5394 3.9782 19 6 4.6831 1.6827 4.1320 20 8 3.7990 1.9402 3.1483 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9562 -0.8900 28 1 3.9330 0.9226 -0.8873 29 1 3.9337 0.9347 0.8926 30 1 2.5450 3.4371 -1.3323 31 1 3.8933 4.5848 -1.1494 32 1 2.8318 4.5914 -4.7474 33 1 3.9129 4.5956 1.1146 34 1 2.5473 3.4689 1.2992 35 1 6.5840 2.6028 4.6042 36 1 4.5855 0.9314 4.9018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141008871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:07 Heat of formation + Delta-G solvation = 17.075473 kcal Electronic energy + Delta-G solvation = -17262.246886 eV Core-core repulsion = 14555.077554 eV Total energy + Delta-G solvation = -2707.169332 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.03129 -37.66271 -34.47428 -33.95483 -32.65128 -30.55963 -28.36520 -27.38975 -25.00828 -23.36985 -22.29069 -21.31941 -21.06628 -19.42032 -17.14042 -16.48673 -16.20048 -15.32515 -14.97476 -14.84285 -14.41974 -13.87157 -13.78310 -13.03679 -12.92907 -12.52065 -12.27153 -12.14807 -11.40145 -11.18334 -11.05046 -11.02448 -10.76207 -10.68108 -10.58815 -10.49172 -10.24883 -9.98280 -9.79712 -9.26715 -8.68278 -8.44497 -7.30371 -6.04575 -4.05237 1.70008 2.94768 3.04128 3.30917 3.38747 3.44016 4.35069 4.44734 4.95196 5.14698 5.19299 5.29351 5.31546 5.33045 5.52170 5.67039 5.80906 5.82443 6.02130 6.08057 6.10190 6.15816 6.19090 6.25149 6.42183 6.52156 6.54722 6.70762 6.89836 7.20568 7.34218 7.75709 7.97755 8.06575 8.10323 8.46158 9.02264 9.58842 11.06126 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.007331 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.369550 B = 3818.254963 C = 4698.006381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.157 4.157 4 C 0.064 3.936 5 N -0.527 5.527 6 C 0.190 3.810 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.140 3.860 16 C 0.222 3.778 17 N -0.479 5.479 18 C -0.045 4.045 19 C -0.094 4.094 20 O -0.205 6.205 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.009 0.991 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.178 0.822 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -6.294 12.731 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.196 4.196 4 C -0.064 4.064 5 N -0.252 5.252 6 C 0.066 3.934 7 C -0.542 4.542 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.011 3.989 16 C 0.014 3.986 17 N -0.208 5.208 18 C -0.184 4.184 19 C -0.165 4.165 20 O -0.091 6.091 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.196 0.804 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.299 -5.711 12.314 13.636 hybrid contribution -0.718 -0.952 -0.354 1.244 sum -2.017 -6.663 11.960 13.839 Atomic orbital electron populations 1.21765 0.96499 1.00805 1.01659 1.21398 0.95272 0.97350 1.01431 1.22244 0.98475 0.96697 1.02218 1.22091 0.91911 0.90892 1.01545 1.62376 1.59231 1.02147 1.01413 1.19850 0.95019 0.93955 0.84599 1.21133 1.21917 1.21408 0.89789 0.91791 1.24954 0.95265 0.95237 0.99013 1.69961 1.31938 1.29324 1.22560 0.86458 0.79373 0.79143 0.82578 1.19666 1.21128 1.21002 1.20557 0.96187 0.98083 0.84105 1.26607 0.90283 0.86587 0.95099 1.70500 1.13657 1.27272 1.09384 1.23352 1.01167 0.96009 0.97831 1.24892 0.91379 1.04811 0.95412 1.84491 1.44961 1.45470 1.34169 0.92636 0.93387 0.93246 0.91969 0.92830 0.93014 0.90252 0.89615 0.93282 0.97346 0.95221 0.92960 0.87219 0.92369 0.80440 0.77467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.88 16 3 C -0.16 -2.75 4.56 -26.73 -0.12 -2.87 16 4 C 0.06 1.24 4.99 -3.82 -0.02 1.22 16 5 N -0.53 -11.27 4.69 -237.51 -1.11 -12.38 16 6 C 0.19 4.73 4.53 -4.98 -0.02 4.71 16 7 C -0.50 -13.83 8.40 -34.44 -0.29 -14.12 16 8 H 0.06 1.77 7.37 -52.49 -0.39 1.39 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 11 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.14 2.56 5.38 -4.97 -0.03 2.53 16 16 C 0.22 3.92 6.91 -12.95 -0.09 3.83 16 17 N -0.48 -8.64 11.29 -11.10 -0.13 -8.76 16 18 C -0.05 -0.63 11.89 -17.77 -0.21 -0.84 16 19 C -0.09 -1.18 12.18 29.35 0.36 -0.82 16 20 O -0.20 -3.24 10.12 5.37 0.05 -3.18 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.86 6.34 -51.93 -0.33 0.53 16 27 H 0.08 1.60 6.28 -51.93 -0.33 1.27 16 28 H 0.09 1.81 6.98 -51.93 -0.36 1.45 16 29 H 0.05 0.91 6.71 -51.93 -0.35 0.56 16 30 H 0.01 0.23 6.01 -51.93 -0.31 -0.08 16 31 H 0.03 0.79 7.91 -51.93 -0.41 0.38 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.11 1.98 7.92 -51.93 -0.41 1.56 16 34 H 0.06 0.98 6.07 -51.93 -0.32 0.67 16 35 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.21 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -30.58 297.10 -6.60 -37.18 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.30 Total: -0.12 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -0.31 Total: -8.36 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.50 Total: -46.44 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: 0.05 Total: -3.18 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.58 -6.60 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141008871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.253 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds