Wall clock time and date at job start Sun Mar 29 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 C 1.53000 * 109.47079 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47167 * 179.59975 * 4 3 2 6 6 C 1.46891 * 111.00301 * 298.09886 * 5 4 3 7 7 C 1.50705 * 109.47117 * 292.95511 * 6 5 4 8 8 H 1.08002 * 119.99860 * 354.94848 * 7 6 5 9 9 C 1.37879 * 120.00180 * 174.96280 * 7 6 5 10 10 N 1.31515 * 119.99662 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99940 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47183 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47213 * 119.99354 * 11 9 7 14 14 H 1.48504 * 109.46744 * 239.99484 * 11 9 7 15 15 C 1.46903 * 110.99757 * 62.05530 * 5 4 3 16 16 C 1.50701 * 109.47402 * 66.04507 * 15 5 4 17 17 N 1.30250 * 125.61913 * 90.00270 * 16 15 5 18 18 C 1.34480 * 108.70022 * 179.97438 * 17 16 15 19 19 C 1.34327 * 107.66762 * 359.97438 * 18 17 16 20 20 O 1.33964 * 125.61712 * 269.69063 * 16 15 5 21 21 H 1.08997 * 109.47346 * 60.00387 * 1 2 3 22 22 H 1.09003 * 109.47046 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47013 * 300.00468 * 1 2 3 24 24 H 1.08999 * 109.47462 * 239.99281 * 2 1 3 25 25 H 1.09006 * 109.46824 * 119.99870 * 2 1 3 26 26 H 1.08992 * 109.47116 * 59.99829 * 3 2 1 27 27 H 1.08997 * 109.46770 * 299.99212 * 3 2 1 28 28 H 1.09005 * 109.47519 * 59.59883 * 4 3 2 29 29 H 1.08998 * 109.47031 * 299.60427 * 4 3 2 30 30 H 1.09006 * 109.47181 * 52.94749 * 6 5 4 31 31 H 1.09000 * 109.47692 * 172.95077 * 6 5 4 32 32 H 0.97006 * 119.99508 * 180.02562 * 10 9 7 33 33 H 1.08999 * 109.46662 * 186.04854 * 15 5 4 34 34 H 1.09000 * 109.46795 * 306.04510 * 15 5 4 35 35 H 1.08002 * 126.16797 * 180.02562 * 18 17 16 36 36 H 1.08002 * 126.44624 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8274 -0.0103 6 6 3.6257 3.5308 -1.2247 7 6 4.3045 2.9247 -2.4260 8 1 5.0503 2.1549 -2.2936 9 6 3.9734 3.3531 -3.6940 10 7 3.0650 4.2903 -3.8552 11 14 4.8153 2.6022 -5.1829 12 1 5.7912 1.5766 -4.7349 13 1 3.7979 1.9685 -6.0596 14 1 5.5263 3.6652 -5.9378 15 6 3.6297 3.5462 1.1965 16 6 4.2935 2.9397 2.4059 17 7 5.4400 3.3046 2.9048 18 6 5.7063 2.5394 3.9782 19 6 4.6831 1.6827 4.1320 20 8 3.7990 1.9402 3.1483 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9562 -0.8900 28 1 3.9330 0.9226 -0.8873 29 1 3.9337 0.9347 0.8926 30 1 2.5450 3.4371 -1.3323 31 1 3.8933 4.5848 -1.1494 32 1 2.8318 4.5914 -4.7474 33 1 3.9129 4.5956 1.1146 34 1 2.5473 3.4689 1.2992 35 1 6.5840 2.6028 4.6042 36 1 4.5855 0.9314 4.9018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141008871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:07 Heat of formation + Delta-G solvation = -5.155994 kcal Electronic energy + Delta-G solvation = -17263.210915 eV Core-core repulsion = 14555.077554 eV Total energy + Delta-G solvation = -2708.133360 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.21267 -39.28166 -35.70275 -35.35365 -34.63649 -31.91410 -29.91208 -28.99139 -26.58480 -25.11212 -23.42498 -22.78032 -22.34596 -20.98228 -18.49909 -18.12343 -17.76122 -16.85922 -16.44289 -16.36561 -15.84855 -15.46861 -15.21092 -14.31844 -14.20127 -14.02849 -13.88913 -13.57058 -13.04530 -12.91205 -12.62849 -12.53911 -12.31649 -12.29727 -12.09627 -11.92190 -11.74244 -11.48083 -11.30449 -11.29163 -10.58713 -9.81099 -9.00763 -8.18414 -6.26768 0.54656 1.40767 1.42353 1.54895 1.76549 1.88508 2.42028 3.14489 3.17431 3.37730 3.97031 3.99976 4.10678 4.19394 4.30555 4.37420 4.42086 4.47808 4.74252 4.81990 4.85999 4.90351 4.95846 5.03502 5.12392 5.19621 5.23612 5.36099 5.38722 5.44676 5.51431 5.67321 6.04389 6.25259 6.52321 6.86926 6.88329 7.41808 8.92208 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.007331 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.369550 B = 3818.254963 C = 4698.006381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.071 3.929 5 N -0.541 5.541 6 C 0.207 3.793 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.962 3.038 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.145 3.855 16 C 0.196 3.804 17 N -0.508 5.508 18 C -0.068 4.068 19 C -0.068 4.068 20 O -0.211 6.211 21 H 0.042 0.958 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.062 0.938 30 H -0.006 1.006 31 H 0.005 0.995 32 H 0.264 0.736 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.209 0.791 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 -8.133 14.198 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.185 4.185 4 C -0.057 4.057 5 N -0.266 5.266 6 C 0.081 3.919 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.191 4.191 10 N -0.571 5.571 11 Si 0.787 3.213 12 H -0.192 1.192 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.016 3.984 16 C -0.011 4.011 17 N -0.239 5.239 18 C -0.206 4.206 19 C -0.138 4.138 20 O -0.097 6.097 21 H 0.061 0.939 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.011 0.989 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.226 0.774 36 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -1.152 -7.564 13.798 15.777 hybrid contribution -0.717 -0.404 -0.653 1.051 sum -1.870 -7.968 13.145 15.484 Atomic orbital electron populations 1.21736 0.95008 1.02171 1.01499 1.21382 0.96575 0.95224 1.01933 1.22100 0.96945 0.98508 1.00970 1.22004 0.93189 0.89554 1.00926 1.62206 1.60015 1.03031 1.01321 1.19460 0.93774 0.92733 0.85894 1.21389 1.21897 1.21303 0.91094 0.92572 1.25769 0.95833 0.95586 1.01881 1.70067 1.33146 1.30475 1.23385 0.85436 0.78465 0.78409 0.78944 1.19193 1.20257 1.20513 1.20390 0.96994 0.97566 0.83437 1.26088 0.90879 0.88297 0.95806 1.70442 1.13901 1.28559 1.10990 1.23942 1.03034 0.96104 0.97482 1.25926 0.89497 1.04081 0.94288 1.84479 1.45676 1.44804 1.34744 0.93884 0.91252 0.92368 0.92672 0.91077 0.92032 0.93573 0.91930 0.91921 0.98855 0.97712 0.92696 0.87926 0.91197 0.77390 0.72335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.11 -3.21 5.93 30.59 0.18 -3.02 16 3 C -0.15 -5.12 4.56 30.59 0.14 -4.98 16 4 C 0.07 2.79 4.99 86.30 0.43 3.22 16 5 N -0.54 -23.81 4.69 -905.36 -4.24 -28.05 16 6 C 0.21 10.78 4.53 85.56 0.39 11.17 16 7 C -0.52 -29.30 8.40 25.60 0.21 -29.09 16 8 H 0.06 3.20 7.37 -2.91 -0.02 3.17 16 9 C 0.01 0.43 5.46 84.65 0.46 0.89 16 10 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 11 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 15 C 0.14 5.41 5.38 85.56 0.46 5.87 16 16 C 0.20 6.81 6.91 88.34 0.61 7.42 16 17 N -0.51 -17.88 11.29 -303.84 -3.43 -21.32 16 18 C -0.07 -1.72 11.89 83.39 0.99 -0.72 16 19 C -0.07 -1.45 12.18 66.93 0.81 -0.63 16 20 O -0.21 -6.18 10.12 -3.69 -0.04 -6.22 16 21 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.06 2.01 6.34 -2.39 -0.02 2.00 16 27 H 0.05 1.92 6.28 -2.39 -0.01 1.91 16 28 H 0.06 2.71 6.98 -2.38 -0.02 2.69 16 29 H 0.06 2.27 6.71 -2.39 -0.02 2.26 16 30 H -0.01 -0.34 6.01 -2.38 -0.01 -0.35 16 31 H 0.00 0.27 7.91 -2.39 -0.02 0.25 16 32 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 33 H 0.10 3.88 7.92 -2.39 -0.02 3.86 16 34 H 0.07 2.39 6.07 -2.39 -0.01 2.38 16 35 H 0.21 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.26 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -67.33 297.10 1.06 -66.27 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.06 Total: 10.42 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 5.41 Total: -12.77 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -7.39 Total: -104.19 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.04 Total: -6.22 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.33 1.06 -66.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141008871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.111 kcal (2) G-P(sol) polarization free energy of solvation -67.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds