Wall clock time and date at job start Sun Mar 29 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47171 * 2 1 4 4 C 1.53005 * 109.47283 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47249 * 187.32927 * 4 3 2 6 6 C 1.36941 * 119.99927 * 96.48642 * 5 4 3 7 7 H 1.08006 * 119.99729 * 160.03572 * 6 5 4 8 8 C 1.38806 * 120.00248 * 340.03435 * 6 5 4 9 9 N 1.31621 * 119.99739 * 356.95485 * 8 6 5 10 10 Si 1.86793 * 120.00386 * 176.95305 * 8 6 5 11 11 H 1.48500 * 109.47073 * 89.99769 * 10 8 6 12 12 H 1.48502 * 109.47633 * 210.00156 * 10 8 6 13 13 H 1.48502 * 109.46924 * 330.00321 * 10 8 6 14 14 C 1.46497 * 120.00064 * 276.49071 * 5 4 3 15 15 C 1.50699 * 109.46962 * 273.26032 * 14 5 4 16 16 O 1.34756 * 126.44430 * 276.54756 * 15 14 5 17 17 C 1.33970 * 107.75680 * 180.02562 * 16 15 14 18 18 N 1.30260 * 108.75972 * 0.02562 * 17 16 15 19 19 C 1.34329 * 126.44682 * 96.57169 * 15 14 5 20 20 C 1.50707 * 126.16143 * 359.97438 * 19 15 14 21 21 H 1.09005 * 109.47223 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47861 * 300.00385 * 1 2 3 23 23 H 1.09001 * 109.46910 * 60.00296 * 1 2 3 24 24 H 1.08996 * 109.47805 * 239.99094 * 2 1 3 25 25 H 1.09005 * 109.47006 * 119.99193 * 2 1 3 26 26 H 1.09002 * 109.47378 * 59.99802 * 3 2 1 27 27 H 1.09001 * 109.46962 * 299.99672 * 3 2 1 28 28 H 1.08999 * 109.46699 * 67.32878 * 4 3 2 29 29 H 1.08999 * 109.46823 * 307.33247 * 4 3 2 30 30 H 0.97005 * 119.99873 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47289 * 153.26204 * 14 5 4 32 32 H 1.09001 * 109.47313 * 33.25973 * 14 5 4 33 33 H 1.07995 * 125.62135 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.47074 * 265.35157 * 20 19 15 35 35 H 1.08999 * 109.47000 * 25.35770 * 20 19 15 36 36 H 1.09005 * 109.46978 * 145.35194 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8124 0.1768 6 6 4.4123 3.2582 1.4223 7 1 5.0582 4.1178 1.5248 8 6 3.9410 2.6055 2.5531 9 7 3.1062 1.5954 2.4299 10 14 4.4915 3.1606 4.2495 11 1 3.5557 4.1944 4.7600 12 1 4.4967 1.9979 5.1734 13 1 5.8600 3.7308 4.1638 14 6 4.1677 3.7054 -0.9793 15 6 5.5065 3.5073 -1.6421 16 8 6.6715 4.0797 -1.2801 17 6 7.6191 3.6449 -2.1214 18 7 7.0751 2.8310 -2.9807 19 6 5.7630 2.7272 -2.7052 20 6 4.7607 1.8874 -3.4544 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8898 25 1 1.8933 -0.5137 0.8901 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9336 1.0463 -0.9474 29 1 3.9329 0.8194 0.8180 30 1 2.7771 1.1390 3.2201 31 1 4.0753 4.7402 -0.6492 32 1 3.3732 3.4785 -1.6902 33 1 8.6622 3.9232 -2.0920 34 1 4.7724 0.8707 -3.0614 35 1 3.7651 2.3134 -3.3308 36 1 5.0198 1.8707 -4.5131 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141053376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:46 Heat of formation + Delta-G solvation = 33.502397 kcal Electronic energy + Delta-G solvation = -17589.803735 eV Core-core repulsion = 14883.346728 eV Total energy + Delta-G solvation = -2706.457007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.65228 -36.48919 -34.52252 -33.58172 -32.14458 -30.42261 -28.46611 -27.14837 -25.25388 -23.56423 -21.88696 -20.94821 -20.19570 -19.56369 -16.90809 -16.41750 -16.04644 -15.05303 -14.47061 -14.18780 -13.81568 -13.45958 -13.29469 -12.87596 -12.80828 -12.48302 -11.90678 -11.63208 -11.47063 -11.36308 -11.05764 -10.75641 -10.48233 -10.45359 -10.26552 -10.11443 -10.00412 -9.89896 -9.67441 -9.34052 -8.42208 -8.04718 -6.88015 -5.74957 -3.27754 2.13563 3.20972 3.33475 3.41341 3.43128 3.47556 4.44145 4.65413 5.32654 5.37843 5.46464 5.55456 5.79327 5.84151 5.90217 5.98395 6.03946 6.15092 6.24352 6.36937 6.45251 6.50706 6.58093 6.74307 6.75742 6.83544 6.91375 6.94833 7.23661 7.29582 7.65954 7.81978 8.08273 8.28978 8.38051 9.19742 9.74829 10.20198 11.22127 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.010158 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.125135 B = 2755.676239 C = 4146.254115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.110 4.110 4 C 0.169 3.831 5 N -0.582 5.582 6 C -0.254 4.254 7 H 0.070 0.930 8 C 0.003 3.997 9 N -0.898 5.898 10 Si 0.910 3.090 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.218 3.782 15 C -0.021 4.021 16 O -0.198 6.198 17 C 0.135 3.865 18 N -0.490 5.490 19 C -0.046 4.046 20 C -0.060 4.060 21 H 0.038 0.962 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.011 0.989 28 H 0.000 1.000 29 H 0.097 0.903 30 H 0.252 0.748 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.238 0.762 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 0.765 -7.101 7.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.149 4.149 4 C 0.045 3.955 5 N -0.301 5.301 6 C -0.383 4.383 7 H 0.088 0.912 8 C -0.194 4.194 9 N -0.544 5.544 10 Si 0.740 3.260 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.088 3.912 15 C -0.078 4.078 16 O -0.082 6.082 17 C -0.091 4.091 18 N -0.220 5.220 19 C -0.166 4.166 20 C -0.118 4.118 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.030 0.970 28 H 0.019 0.981 29 H 0.115 0.885 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.253 0.747 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.615 0.383 -7.346 7.381 hybrid contribution 0.254 0.512 1.423 1.533 sum 0.869 0.896 -5.923 6.053 Atomic orbital electron populations 1.21736 0.97696 0.99790 1.00967 1.21349 0.93957 0.99217 1.00437 1.22083 0.98321 0.94200 1.00286 1.20957 0.92059 0.85153 0.97362 1.44181 1.74244 1.09424 1.02214 1.19307 1.23915 1.12664 0.82441 0.91176 1.24954 0.97897 0.98604 0.97975 1.70122 1.33819 1.23070 1.27410 0.86178 0.78239 0.77616 0.84003 1.21419 1.21637 1.20705 1.19366 0.85247 0.96297 0.90300 1.25766 0.89017 0.96808 0.96258 1.84508 1.17407 1.56838 1.49489 1.27697 0.96410 0.96965 0.88050 1.70179 1.07747 1.17690 1.26380 1.21372 0.91768 1.04041 0.99423 1.19997 0.95132 0.98129 0.98520 0.94289 0.93033 0.93928 0.94489 0.91787 0.88812 0.97006 0.98137 0.88486 0.93744 0.91414 0.90507 0.74654 0.91301 0.91076 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.91 37.15 0.37 -1.96 16 2 C -0.11 -2.07 5.93 -26.74 -0.16 -2.23 16 3 C -0.11 -2.33 4.79 -26.73 -0.13 -2.46 16 4 C 0.17 3.91 4.88 -4.04 -0.02 3.89 16 5 N -0.58 -13.94 2.52 -174.61 -0.44 -14.38 16 6 C -0.25 -6.70 9.71 -15.06 -0.15 -6.85 16 7 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 8 C 0.00 0.08 5.27 -17.43 -0.09 -0.02 16 9 N -0.90 -23.71 7.93 55.49 0.44 -23.27 16 10 Si 0.91 21.27 29.55 -169.99 -5.02 16.24 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 C 0.22 4.42 6.08 -5.20 -0.03 4.39 16 15 C -0.02 -0.42 6.97 -35.69 -0.25 -0.67 16 16 O -0.20 -3.91 10.78 5.35 0.06 -3.85 16 17 C 0.14 2.26 13.23 52.10 0.69 2.95 16 18 N -0.49 -9.17 11.29 -11.18 -0.13 -9.30 16 19 C -0.05 -0.87 7.11 -82.81 -0.59 -1.46 16 20 C -0.06 -0.95 9.78 36.01 0.35 -0.60 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.09 2.31 6.42 -51.93 -0.33 1.98 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.00 0.01 7.25 -51.93 -0.38 -0.37 16 29 H 0.10 2.55 5.94 -51.93 -0.31 2.25 16 30 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.07 1.35 8.01 -51.93 -0.42 0.93 16 32 H 0.08 1.40 6.86 -51.93 -0.36 1.04 16 33 H 0.24 2.61 8.06 -52.49 -0.42 2.19 16 34 H 0.07 1.09 7.78 -51.93 -0.40 0.69 16 35 H 0.07 1.02 6.93 -51.93 -0.36 0.66 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 297.45 15.07 4.48 4.48 Total: -1.00 -28.79 297.45 -6.10 -34.88 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.48 Total: 0.21 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 0.00 Total: -5.02 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.13 Total: -46.95 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: 0.06 Total: -3.85 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.79 -6.10 -34.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141053376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.386 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds