Wall clock time and date at job start Sun Mar 29 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47171 * 2 1 4 4 C 1.53005 * 109.47283 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47249 * 187.32927 * 4 3 2 6 6 C 1.36941 * 119.99927 * 96.48642 * 5 4 3 7 7 H 1.08006 * 119.99729 * 160.03572 * 6 5 4 8 8 C 1.38806 * 120.00248 * 340.03435 * 6 5 4 9 9 N 1.31621 * 119.99739 * 356.95485 * 8 6 5 10 10 Si 1.86793 * 120.00386 * 176.95305 * 8 6 5 11 11 H 1.48500 * 109.47073 * 89.99769 * 10 8 6 12 12 H 1.48502 * 109.47633 * 210.00156 * 10 8 6 13 13 H 1.48502 * 109.46924 * 330.00321 * 10 8 6 14 14 C 1.46497 * 120.00064 * 276.49071 * 5 4 3 15 15 C 1.50699 * 109.46962 * 273.26032 * 14 5 4 16 16 O 1.34756 * 126.44430 * 276.54756 * 15 14 5 17 17 C 1.33970 * 107.75680 * 180.02562 * 16 15 14 18 18 N 1.30260 * 108.75972 * 0.02562 * 17 16 15 19 19 C 1.34329 * 126.44682 * 96.57169 * 15 14 5 20 20 C 1.50707 * 126.16143 * 359.97438 * 19 15 14 21 21 H 1.09005 * 109.47223 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47861 * 300.00385 * 1 2 3 23 23 H 1.09001 * 109.46910 * 60.00296 * 1 2 3 24 24 H 1.08996 * 109.47805 * 239.99094 * 2 1 3 25 25 H 1.09005 * 109.47006 * 119.99193 * 2 1 3 26 26 H 1.09002 * 109.47378 * 59.99802 * 3 2 1 27 27 H 1.09001 * 109.46962 * 299.99672 * 3 2 1 28 28 H 1.08999 * 109.46699 * 67.32878 * 4 3 2 29 29 H 1.08999 * 109.46823 * 307.33247 * 4 3 2 30 30 H 0.97005 * 119.99873 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47289 * 153.26204 * 14 5 4 32 32 H 1.09001 * 109.47313 * 33.25973 * 14 5 4 33 33 H 1.07995 * 125.62135 * 180.02562 * 17 16 15 34 34 H 1.09003 * 109.47074 * 265.35157 * 20 19 15 35 35 H 1.08999 * 109.47000 * 25.35770 * 20 19 15 36 36 H 1.09005 * 109.46978 * 145.35194 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8124 0.1768 6 6 4.4123 3.2582 1.4223 7 1 5.0582 4.1178 1.5248 8 6 3.9410 2.6055 2.5531 9 7 3.1062 1.5954 2.4299 10 14 4.4915 3.1606 4.2495 11 1 3.5557 4.1944 4.7600 12 1 4.4967 1.9979 5.1734 13 1 5.8600 3.7308 4.1638 14 6 4.1677 3.7054 -0.9793 15 6 5.5065 3.5073 -1.6421 16 8 6.6715 4.0797 -1.2801 17 6 7.6191 3.6449 -2.1214 18 7 7.0751 2.8310 -2.9807 19 6 5.7630 2.7272 -2.7052 20 6 4.7607 1.8874 -3.4544 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8898 25 1 1.8933 -0.5137 0.8901 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9336 1.0463 -0.9474 29 1 3.9329 0.8194 0.8180 30 1 2.7771 1.1390 3.2201 31 1 4.0753 4.7402 -0.6492 32 1 3.3732 3.4785 -1.6902 33 1 8.6622 3.9232 -2.0920 34 1 4.7724 0.8707 -3.0614 35 1 3.7651 2.3134 -3.3308 36 1 5.0198 1.8707 -4.5131 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141053376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:46 Heat of formation + Delta-G solvation = 15.783182 kcal Electronic energy + Delta-G solvation = -17590.572098 eV Core-core repulsion = 14883.346728 eV Total energy + Delta-G solvation = -2707.225370 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.08816 -38.25860 -35.96007 -35.12907 -33.90223 -32.03380 -30.00151 -28.73769 -26.84897 -25.23787 -23.40746 -22.49863 -21.71124 -21.21477 -18.74531 -17.84863 -17.61751 -16.85753 -15.92428 -15.83731 -15.42440 -15.16868 -14.93082 -14.28809 -14.10466 -13.84793 -13.46062 -13.21226 -12.98672 -12.94333 -12.85559 -12.47389 -12.21789 -12.00287 -11.88812 -11.84442 -11.66154 -11.44230 -11.31310 -11.11226 -10.32533 -9.51720 -8.74103 -7.72761 -5.26525 0.69540 1.46628 1.48684 1.55806 1.80998 2.10774 2.52266 3.34113 3.43929 3.71578 4.06071 4.13936 4.32793 4.41961 4.49349 4.64226 4.72014 4.79318 4.81717 4.91466 4.95738 5.09803 5.16460 5.18184 5.28861 5.34946 5.37473 5.56518 5.59916 5.60889 5.69313 5.95006 6.29001 6.43317 6.88061 7.23449 7.86476 8.27254 9.20864 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.010158 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.125135 B = 2755.676239 C = 4146.254115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.097 4.097 4 C 0.177 3.823 5 N -0.599 5.599 6 C -0.267 4.267 7 H 0.060 0.940 8 C -0.040 4.040 9 N -0.906 5.906 10 Si 0.963 3.037 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.282 1.282 14 C 0.222 3.778 15 C -0.054 4.054 16 O -0.219 6.219 17 C 0.155 3.845 18 N -0.516 5.516 19 C -0.044 4.044 20 C -0.060 4.060 21 H 0.060 0.940 22 H 0.038 0.962 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.012 0.988 29 H 0.061 0.939 30 H 0.246 0.754 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.287 0.713 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 0.692 -8.341 8.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C -0.136 4.136 4 C 0.053 3.947 5 N -0.318 5.318 6 C -0.396 4.396 7 H 0.078 0.922 8 C -0.236 4.236 9 N -0.552 5.552 10 Si 0.792 3.208 11 H -0.213 1.213 12 H -0.220 1.220 13 H -0.207 1.207 14 C 0.094 3.906 15 C -0.110 4.110 16 O -0.105 6.105 17 C -0.071 4.071 18 N -0.246 5.246 19 C -0.164 4.164 20 C -0.118 4.118 21 H 0.079 0.921 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.302 0.698 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.797 0.313 -8.618 8.660 hybrid contribution 0.323 0.570 1.723 1.843 sum 1.119 0.883 -6.895 7.041 Atomic orbital electron populations 1.21665 0.95544 1.01276 1.01054 1.21277 0.95837 0.97243 1.00150 1.21857 0.96983 0.95710 0.99088 1.20776 0.93125 0.84545 0.96267 1.44297 1.74889 1.10122 1.02540 1.19402 1.23858 1.12466 0.83910 0.92198 1.25539 0.98470 0.99091 1.00451 1.70301 1.34190 1.23384 1.27373 0.85350 0.77683 0.76914 0.80822 1.21262 1.21999 1.20739 1.19397 0.86278 0.95408 0.89527 1.25438 0.89139 0.98823 0.97610 1.84482 1.17980 1.57526 1.50489 1.28904 0.97564 0.94666 0.85968 1.70242 1.07770 1.19053 1.27504 1.21854 0.92464 1.03166 0.98872 1.20103 0.95024 0.97440 0.99188 0.92128 0.94299 0.92470 0.92780 0.94018 0.92329 0.95606 0.96986 0.92088 0.94410 0.91824 0.88462 0.69771 0.91476 0.89843 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.91 71.98 0.71 -3.48 16 2 C -0.11 -3.88 5.93 30.59 0.18 -3.69 16 3 C -0.10 -4.10 4.79 30.60 0.15 -3.95 16 4 C 0.18 8.23 4.88 86.38 0.42 8.65 16 5 N -0.60 -28.87 2.52 -706.35 -1.78 -30.65 16 6 C -0.27 -14.29 9.71 84.03 0.82 -13.47 16 7 H 0.06 3.25 7.83 -2.91 -0.02 3.23 16 8 C -0.04 -2.12 5.27 84.86 0.45 -1.68 16 9 N -0.91 -48.92 7.93 21.65 0.17 -48.75 16 10 Si 0.96 44.36 29.55 68.60 2.03 46.39 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 C 0.22 8.94 6.08 85.63 0.52 9.46 16 15 C -0.05 -2.11 6.97 24.79 0.17 -1.93 16 16 O -0.22 -8.42 10.78 -3.79 -0.04 -8.46 16 17 C 0.16 4.80 13.23 130.48 1.73 6.53 16 18 N -0.52 -18.24 11.29 -304.06 -3.43 -21.68 16 19 C -0.04 -1.60 7.11 41.26 0.29 -1.31 16 20 C -0.06 -1.77 9.78 71.24 0.70 -1.07 16 21 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 22 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.06 2.92 6.42 -2.39 -0.02 2.91 16 27 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.01 0.52 7.25 -2.39 -0.02 0.50 16 29 H 0.06 3.28 5.94 -2.39 -0.01 3.27 16 30 H 0.25 13.12 8.31 -92.70 -0.77 12.35 16 31 H 0.06 2.55 8.01 -2.39 -0.02 2.53 16 32 H 0.10 3.41 6.86 -2.39 -0.02 3.39 16 33 H 0.29 5.21 8.06 -2.91 -0.02 5.19 16 34 H 0.07 1.99 7.78 -2.39 -0.02 1.97 16 35 H 0.08 2.20 6.93 -2.39 -0.02 2.18 16 36 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -62.24 297.45 4.13 -58.11 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.05 Total: 10.98 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 6.14 Total: -5.94 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -5.04 Total: -101.08 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.04 Total: -8.46 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -62.24 4.13 -58.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141053376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.894 kcal (2) G-P(sol) polarization free energy of solvation -62.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds