Wall clock time and date at job start Sun Mar 29 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.52998 * 109.46976 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47372 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00028 * 169.99357 * 5 4 3 7 7 C 1.50699 * 109.47499 * 288.39458 * 6 5 4 8 8 H 1.07997 * 120.00015 * 2.80037 * 7 6 5 9 9 C 1.37876 * 120.00171 * 182.80028 * 7 6 5 10 10 N 1.31512 * 120.00113 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99881 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47141 * 90.00334 * 11 9 7 13 13 H 1.48497 * 109.46884 * 210.00122 * 11 9 7 14 14 H 1.48496 * 109.46978 * 330.00280 * 11 9 7 15 15 C 1.46903 * 111.00147 * 293.95145 * 5 4 3 16 16 C 1.50693 * 109.47096 * 164.08347 * 15 5 4 17 17 C 1.34338 * 126.16525 * 94.98317 * 16 15 5 18 18 O 1.34754 * 107.10981 * 179.80996 * 17 16 15 19 19 C 1.33960 * 107.75816 * 0.35857 * 18 17 16 20 20 N 1.30254 * 108.76101 * 359.63691 * 19 18 17 21 21 H 1.08996 * 109.47092 * 300.00340 * 1 2 3 22 22 H 1.09004 * 109.47184 * 59.99945 * 1 2 3 23 23 H 1.08995 * 109.47670 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46760 * 239.99918 * 2 1 3 25 25 H 1.08991 * 109.46997 * 119.99828 * 2 1 3 26 26 H 1.08996 * 109.47488 * 59.99903 * 3 2 1 27 27 H 1.09002 * 109.47220 * 299.99261 * 3 2 1 28 28 H 1.08996 * 109.47391 * 59.99477 * 4 3 2 29 29 H 1.09004 * 109.46885 * 299.99872 * 4 3 2 30 30 H 1.08999 * 109.46961 * 48.39730 * 6 5 4 31 31 H 1.09002 * 109.46993 * 168.39463 * 6 5 4 32 32 H 0.97003 * 120.00101 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.46867 * 44.08426 * 15 5 4 34 34 H 1.08999 * 109.46736 * 284.08465 * 15 5 4 35 35 H 1.08001 * 126.44228 * 0.05932 * 17 16 15 36 36 H 1.08001 * 125.62092 * 179.89155 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 5.5086 2.8736 0.2364 7 6 5.7935 2.5205 1.6735 8 1 4.9840 2.2413 2.3316 9 6 7.0876 2.5538 2.1481 10 7 7.3363 2.2452 3.4021 11 14 8.4878 3.0360 1.0095 12 1 8.6915 4.5057 1.0702 13 1 9.7319 2.3459 1.4352 14 1 8.1532 2.6396 -0.3819 15 6 3.7098 3.5090 -1.2547 16 6 3.8673 4.9972 -1.0781 17 6 4.9508 5.7234 -1.3995 18 8 4.6765 7.0049 -1.0861 19 6 3.4397 7.0443 -0.5730 20 7 2.9489 5.8377 -0.5696 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.9329 0.9287 -0.8908 29 1 3.9336 0.9285 0.8892 30 1 6.0072 2.1594 -0.4189 31 1 5.8791 3.8774 0.0286 32 1 8.2468 2.2683 3.7359 33 1 2.6762 3.2815 -1.5156 34 1 4.3697 3.1657 -2.0513 35 1 5.8677 5.3507 -1.8319 36 1 2.9315 7.9310 -0.2238 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141130138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:05 Heat of formation + Delta-G solvation = 18.635449 kcal Electronic energy + Delta-G solvation = -17088.516530 eV Core-core repulsion = 14381.414844 eV Total energy + Delta-G solvation = -2707.101686 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.96684 -37.51111 -34.75779 -34.00707 -32.43015 -30.45645 -28.93401 -27.52766 -25.01456 -22.77742 -22.34323 -21.18367 -20.66208 -19.71650 -17.25283 -16.82955 -16.20078 -15.29772 -14.93636 -14.83627 -14.43140 -14.07375 -13.58931 -13.49633 -12.91347 -12.49588 -12.32906 -12.12265 -11.94533 -11.38354 -11.01320 -10.91204 -10.83665 -10.67147 -10.52336 -10.22197 -10.17510 -9.94092 -9.82886 -9.28470 -8.60001 -8.52556 -7.37126 -6.04610 -4.01013 1.80905 3.02297 3.18841 3.25689 3.32517 3.33504 4.40608 4.43710 4.77330 5.18974 5.24451 5.26560 5.27565 5.39914 5.43238 5.71192 5.78334 5.83491 6.00283 6.05321 6.09598 6.15335 6.17912 6.24392 6.34960 6.46015 6.60265 6.69418 6.73780 6.89326 6.95465 7.60843 7.89518 8.03580 8.07416 8.66919 9.05760 9.57064 11.08812 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.010128 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.312299 B = 2763.860954 C = 4473.580029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.116 4.116 4 C 0.065 3.935 5 N -0.520 5.520 6 C 0.160 3.840 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.871 3.129 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.268 1.268 15 C 0.126 3.874 16 C 0.014 3.986 17 C -0.074 4.074 18 O -0.210 6.210 19 C 0.157 3.843 20 N -0.469 5.469 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.019 0.981 29 H 0.089 0.911 30 H -0.012 1.012 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.208 0.792 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 3.194 -10.974 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.063 4.063 5 N -0.244 5.244 6 C 0.034 3.966 7 C -0.542 4.542 8 H 0.099 0.901 9 C -0.133 4.133 10 N -0.539 5.539 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.193 1.193 15 C -0.003 4.003 16 C -0.106 4.106 17 C -0.145 4.145 18 O -0.096 6.096 19 C -0.070 4.070 20 N -0.198 5.198 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.107 0.893 30 H 0.006 0.994 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.225 0.775 36 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.994 3.295 -10.242 14.023 hybrid contribution 2.022 0.128 -1.245 2.378 sum -6.972 3.424 -11.487 13.867 Atomic orbital electron populations 1.21753 0.96307 1.00951 1.01656 1.21494 0.95352 0.97480 1.01859 1.21662 0.95815 0.95676 1.02226 1.22028 0.93866 0.89198 1.01168 1.61852 1.17278 1.14995 1.30315 1.20223 0.82884 0.95588 0.97881 1.21015 0.94136 1.45214 0.93856 0.90118 1.24891 0.98431 0.95153 0.94863 1.69891 1.20414 1.49395 1.14239 0.86925 0.82468 0.79053 0.81721 1.20196 1.21121 1.19313 1.20363 1.01457 0.86136 0.92341 1.21616 0.90578 0.97381 1.01032 1.24760 1.01858 0.80659 1.07221 1.84435 1.33443 1.30148 1.61595 1.27992 0.81208 0.98524 0.99290 1.70287 1.32199 1.00273 1.17038 0.92730 0.93116 0.93259 0.92549 0.91825 0.91162 0.92710 0.96278 0.89252 0.99425 0.95926 0.92709 0.89641 0.94201 0.77515 0.73946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.12 -1.82 5.18 -26.73 -0.14 -1.96 16 4 C 0.07 1.23 4.80 -3.83 -0.02 1.21 16 5 N -0.52 -11.03 4.40 -237.52 -1.05 -12.08 16 6 C 0.16 3.88 3.64 -4.98 -0.02 3.86 16 7 C -0.50 -14.45 9.05 -34.44 -0.31 -14.76 16 8 H 0.08 2.54 7.71 -52.49 -0.40 2.14 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 11 Si 0.87 21.43 27.41 -169.99 -4.66 16.77 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.26 6.62 56.52 0.37 -5.88 16 15 C 0.13 2.23 5.39 -4.98 -0.03 2.20 16 16 C 0.01 0.25 6.09 -82.81 -0.50 -0.25 16 17 C -0.07 -1.21 10.83 29.36 0.32 -0.89 16 18 O -0.21 -3.27 10.77 5.38 0.06 -3.21 16 19 C 0.16 2.23 13.23 52.09 0.69 2.92 16 20 N -0.47 -8.33 11.29 -11.18 -0.13 -8.46 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.05 0.81 6.28 -51.93 -0.33 0.49 16 28 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 29 H 0.09 1.91 7.02 -51.93 -0.36 1.54 16 30 H -0.01 -0.29 7.31 -51.93 -0.38 -0.67 16 31 H 0.02 0.55 5.48 -51.93 -0.28 0.26 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.09 1.40 5.94 -51.93 -0.31 1.09 16 34 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 35 H 0.21 2.88 8.06 -52.49 -0.42 2.46 16 36 H 0.24 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 297.39 15.07 4.48 4.48 Total: -1.00 -33.01 297.39 -5.87 -38.87 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.45 Total: -0.43 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 0.10 Total: -8.93 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.40 Total: -47.56 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.06 Total: -3.21 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.66 Total: 16.77 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.01 -5.87 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141130138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.510 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds