Wall clock time and date at job start Sun Mar 29 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.52998 * 109.46976 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47372 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00028 * 169.99357 * 5 4 3 7 7 C 1.50699 * 109.47499 * 288.39458 * 6 5 4 8 8 H 1.07997 * 120.00015 * 2.80037 * 7 6 5 9 9 C 1.37876 * 120.00171 * 182.80028 * 7 6 5 10 10 N 1.31512 * 120.00113 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99881 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47141 * 90.00334 * 11 9 7 13 13 H 1.48497 * 109.46884 * 210.00122 * 11 9 7 14 14 H 1.48496 * 109.46978 * 330.00280 * 11 9 7 15 15 C 1.46903 * 111.00147 * 293.95145 * 5 4 3 16 16 C 1.50693 * 109.47096 * 164.08347 * 15 5 4 17 17 C 1.34338 * 126.16525 * 94.98317 * 16 15 5 18 18 O 1.34754 * 107.10981 * 179.80996 * 17 16 15 19 19 C 1.33960 * 107.75816 * 0.35857 * 18 17 16 20 20 N 1.30254 * 108.76101 * 359.63691 * 19 18 17 21 21 H 1.08996 * 109.47092 * 300.00340 * 1 2 3 22 22 H 1.09004 * 109.47184 * 59.99945 * 1 2 3 23 23 H 1.08995 * 109.47670 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46760 * 239.99918 * 2 1 3 25 25 H 1.08991 * 109.46997 * 119.99828 * 2 1 3 26 26 H 1.08996 * 109.47488 * 59.99903 * 3 2 1 27 27 H 1.09002 * 109.47220 * 299.99261 * 3 2 1 28 28 H 1.08996 * 109.47391 * 59.99477 * 4 3 2 29 29 H 1.09004 * 109.46885 * 299.99872 * 4 3 2 30 30 H 1.08999 * 109.46961 * 48.39730 * 6 5 4 31 31 H 1.09002 * 109.46993 * 168.39463 * 6 5 4 32 32 H 0.97003 * 120.00101 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.46867 * 44.08426 * 15 5 4 34 34 H 1.08999 * 109.46736 * 284.08465 * 15 5 4 35 35 H 1.08001 * 126.44228 * 0.05932 * 17 16 15 36 36 H 1.08001 * 125.62092 * 179.89155 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 5.5086 2.8736 0.2364 7 6 5.7935 2.5205 1.6735 8 1 4.9840 2.2413 2.3316 9 6 7.0876 2.5538 2.1481 10 7 7.3363 2.2452 3.4021 11 14 8.4878 3.0360 1.0095 12 1 8.6915 4.5057 1.0702 13 1 9.7319 2.3459 1.4352 14 1 8.1532 2.6396 -0.3819 15 6 3.7098 3.5090 -1.2547 16 6 3.8673 4.9972 -1.0781 17 6 4.9508 5.7234 -1.3995 18 8 4.6765 7.0049 -1.0861 19 6 3.4397 7.0443 -0.5730 20 7 2.9489 5.8377 -0.5696 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6767 1.9563 0.8899 27 1 1.6767 1.9563 -0.8901 28 1 3.9329 0.9287 -0.8908 29 1 3.9336 0.9285 0.8892 30 1 6.0072 2.1594 -0.4189 31 1 5.8791 3.8774 0.0286 32 1 8.2468 2.2683 3.7359 33 1 2.6762 3.2815 -1.5156 34 1 4.3697 3.1657 -2.0513 35 1 5.8677 5.3507 -1.8319 36 1 2.9315 7.9310 -0.2238 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141130138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:05 Heat of formation + Delta-G solvation = -6.636649 kcal Electronic energy + Delta-G solvation = -17089.612410 eV Core-core repulsion = 14381.414844 eV Total energy + Delta-G solvation = -2708.197566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.16071 -39.05538 -35.97001 -35.43023 -34.46281 -31.74956 -30.62135 -28.97833 -26.53857 -24.34278 -23.53768 -22.60495 -21.96682 -21.22904 -19.03743 -18.38437 -17.45405 -16.75403 -16.51960 -16.03045 -15.92271 -15.69549 -15.00762 -14.86980 -14.50763 -14.00695 -13.79984 -13.60091 -13.29091 -12.95210 -12.55371 -12.51622 -12.20171 -12.02873 -11.93168 -11.79725 -11.56749 -11.47351 -11.40467 -11.21376 -10.78071 -9.80201 -8.99488 -8.28364 -6.31308 0.62881 1.31950 1.34427 1.44571 1.78019 2.08682 2.33356 3.04436 3.27705 3.38760 3.94553 4.04826 4.09208 4.18006 4.31847 4.43783 4.52618 4.56260 4.70587 4.79546 4.89504 4.91576 4.95747 5.00851 5.05316 5.10754 5.19238 5.31450 5.44807 5.46877 5.53160 5.55395 5.99550 6.39410 6.64708 6.74587 6.87451 7.31559 8.88818 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.010128 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.312299 B = 2763.860954 C = 4473.580029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.104 4.104 4 C 0.068 3.932 5 N -0.543 5.543 6 C 0.174 3.826 7 C -0.513 4.513 8 H 0.030 0.970 9 C 0.005 3.995 10 N -0.951 5.951 11 Si 0.945 3.055 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.243 1.243 15 C 0.129 3.871 16 C -0.016 4.016 17 C -0.077 4.077 18 O -0.213 6.213 19 C 0.173 3.827 20 N -0.511 5.511 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.051 0.949 30 H -0.008 1.008 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.229 0.771 36 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.259 4.182 -13.482 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.142 4.142 4 C -0.060 4.060 5 N -0.267 5.267 6 C 0.047 3.953 7 C -0.551 4.551 8 H 0.048 0.952 9 C -0.192 4.192 10 N -0.592 5.592 11 Si 0.768 3.232 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.166 1.166 15 C 0.001 3.999 16 C -0.135 4.135 17 C -0.149 4.149 18 O -0.099 6.099 19 C -0.053 4.053 20 N -0.240 5.240 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.010 0.990 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges -8.938 4.272 -12.770 16.162 hybrid contribution 1.881 -0.150 -0.382 1.926 sum -7.056 4.122 -13.153 15.484 Atomic orbital electron populations 1.21722 0.94526 1.02146 1.01897 1.21477 0.96871 0.95569 1.01988 1.21557 0.93420 0.97437 1.01769 1.21993 0.95872 0.88160 0.99974 1.61723 1.15351 1.16403 1.33255 1.19938 0.85157 0.95563 0.94674 1.21252 0.93097 1.44991 0.95789 0.95152 1.25887 1.01674 0.94997 0.96627 1.70065 1.21321 1.51052 1.16722 0.85747 0.78073 0.79062 0.80344 1.19102 1.20767 1.16582 1.20395 1.02454 0.86076 0.90972 1.21762 0.91608 0.97614 1.02534 1.25153 1.02148 0.80771 1.06781 1.84461 1.33984 1.29790 1.61669 1.29092 0.80454 0.99027 0.96728 1.70260 1.33272 1.01702 1.18799 0.93303 0.92080 0.91617 0.91164 0.92996 0.93416 0.91191 0.94672 0.93056 0.98991 0.95280 0.92521 0.88567 0.92241 0.75425 0.69232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.91 71.98 0.71 -2.37 16 2 C -0.12 -3.11 5.93 30.59 0.18 -2.93 16 3 C -0.10 -3.26 5.18 30.59 0.16 -3.10 16 4 C 0.07 2.58 4.80 86.30 0.41 3.00 16 5 N -0.54 -22.99 4.40 -905.39 -3.98 -26.97 16 6 C 0.17 8.32 3.64 85.56 0.31 8.64 16 7 C -0.51 -30.37 9.05 25.60 0.23 -30.14 16 8 H 0.03 2.04 7.71 -2.91 -0.02 2.02 16 9 C 0.00 0.29 5.47 84.65 0.46 0.75 16 10 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 11 Si 0.94 43.75 27.41 68.60 1.88 45.63 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.24 -10.15 6.62 99.48 0.66 -9.49 16 15 C 0.13 4.37 5.39 85.55 0.46 4.83 16 16 C -0.02 -0.56 6.09 41.26 0.25 -0.30 16 17 C -0.08 -2.35 10.83 66.93 0.72 -1.63 16 18 O -0.21 -6.05 10.77 -3.68 -0.04 -6.09 16 19 C 0.17 4.48 13.23 130.48 1.73 6.21 16 20 N -0.51 -17.38 11.29 -304.08 -3.43 -20.82 16 21 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.98 6.28 -2.39 -0.01 1.96 16 28 H 0.04 1.22 8.12 -2.39 -0.02 1.20 16 29 H 0.05 2.32 7.02 -2.38 -0.02 2.30 16 30 H -0.01 -0.35 7.31 -2.39 -0.02 -0.37 16 31 H 0.03 1.36 5.48 -2.39 -0.01 1.35 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.10 2.99 5.94 -2.39 -0.01 2.98 16 34 H 0.06 1.77 8.05 -2.39 -0.02 1.75 16 35 H 0.23 5.62 8.06 -2.91 -0.02 5.60 16 36 H 0.29 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -73.93 297.39 1.36 -72.57 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.00 Total: 12.98 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 5.64 Total: -17.04 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -7.12 Total: -108.05 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.04 Total: -6.09 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -73.93 1.36 -72.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141130138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.935 kcal (2) G-P(sol) polarization free energy of solvation -73.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds