Wall clock time and date at job start Sun Mar 29 2020 22:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33000 * 1 3 3 C 1.50703 * 119.99942 * 2 1 4 4 C 1.47102 * 119.99565 * 180.02562 * 2 1 3 5 5 O 1.21615 * 120.00153 * 337.28911 * 4 2 1 6 6 N 1.34776 * 119.99719 * 157.01930 * 4 2 1 7 7 C 1.47079 * 120.88132 * 173.62082 * 6 4 2 8 8 C 1.53695 * 108.28052 * 128.75395 * 7 6 4 9 9 N 1.46896 * 109.25645 * 54.07900 * 8 7 6 10 10 C 1.46901 * 110.99868 * 172.60828 * 9 8 7 11 11 C 1.50692 * 109.47174 * 294.30478 * 10 9 8 12 12 H 1.07993 * 120.00148 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00061 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99596 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00151 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46942 * 60.00124 * 15 13 11 17 17 H 1.48502 * 109.47025 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46959 * 299.99813 * 15 13 11 19 19 C 1.46903 * 111.27176 * 296.75867 * 9 8 7 20 20 C 1.47087 * 120.88096 * 353.89286 * 6 4 2 21 21 H 1.08002 * 119.99499 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.00119 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47287 * 276.65004 * 3 2 1 24 24 H 1.08998 * 109.47044 * 36.65702 * 3 2 1 25 25 H 1.09000 * 109.46462 * 156.65101 * 3 2 1 26 26 H 1.09001 * 109.62635 * 248.52050 * 7 6 4 27 27 H 1.09000 * 109.63041 * 9.09670 * 7 6 4 28 28 H 1.09002 * 109.64367 * 294.07990 * 8 7 6 29 29 H 1.08998 * 109.42196 * 173.95192 * 8 7 6 30 30 H 1.09009 * 109.46742 * 54.30847 * 10 9 8 31 31 H 1.08998 * 109.47297 * 174.29792 * 10 9 8 32 32 H 0.97005 * 119.99724 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.48973 * 303.14750 * 19 9 8 34 34 H 1.08997 * 109.49327 * 183.06439 * 19 9 8 35 35 H 1.08998 * 109.62899 * 350.89809 * 20 6 4 36 36 H 1.09000 * 109.62810 * 111.47986 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.0654 -1.2740 -0.0006 5 8 1.5280 -2.2865 0.4056 6 7 3.3329 -1.3201 -0.4563 7 6 4.1334 -2.5484 -0.3381 8 6 4.7214 -2.8754 -1.7200 9 7 5.4515 -1.7051 -2.2251 10 6 6.1757 -2.0297 -3.4613 11 6 7.2579 -3.0342 -3.1604 12 1 7.3944 -3.3951 -2.1517 13 6 8.0739 -3.4927 -4.1729 14 7 7.9073 -3.0535 -5.4014 15 14 9.4159 -4.7374 -3.7998 16 1 8.8054 -5.9718 -3.2444 17 1 10.1479 -5.0656 -5.0495 18 1 10.3616 -4.1636 -2.8090 19 6 4.5514 -0.5618 -2.4270 20 6 3.9544 -0.1417 -1.0797 21 1 -0.5399 0.9354 0.0004 22 1 -0.5400 -0.9352 -0.0004 23 1 2.1621 1.6793 -1.0207 24 1 1.5512 2.0320 0.6135 25 1 3.0822 1.1479 0.4073 26 1 4.9397 -2.3924 0.3786 27 1 3.4978 -3.3691 -0.0056 28 1 3.9165 -3.1278 -2.4103 29 1 5.4044 -3.7204 -1.6325 30 1 5.4817 -2.4502 -4.1892 31 1 6.6241 -1.1234 -3.8684 32 1 8.4816 -3.3757 -6.1137 33 1 3.7489 -0.8465 -3.1075 34 1 5.1112 0.2712 -2.8523 35 1 3.2004 0.6293 -1.2377 36 1 4.7438 0.2411 -0.4329 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142511843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:33 Heat of formation + Delta-G solvation = 10.596861 kcal Electronic energy + Delta-G solvation = -17288.150403 eV Core-core repulsion = 14580.700138 eV Total energy + Delta-G solvation = -2707.450265 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.17459 -37.53301 -35.11382 -34.15631 -32.37062 -30.75471 -28.32378 -27.63261 -25.62085 -23.60945 -22.67179 -21.50695 -19.87702 -18.35981 -16.52061 -16.43151 -15.78009 -15.38614 -14.80241 -14.48375 -14.29933 -13.96659 -13.60302 -13.47183 -13.25738 -12.81051 -12.56832 -12.09771 -11.98705 -11.41361 -11.21263 -11.04425 -10.82222 -10.73996 -10.54510 -10.50528 -9.88812 -9.64987 -9.46916 -9.25351 -8.49214 -8.39430 -7.32680 -6.06296 -4.08212 1.39059 3.11947 3.29997 3.32068 3.36140 3.39004 4.38846 4.51536 4.74487 4.78900 5.07844 5.26169 5.29512 5.37336 5.41835 5.52365 5.57042 5.65521 5.73310 5.81911 5.96056 6.02335 6.20156 6.21366 6.30236 6.43297 6.54298 6.76914 7.21650 7.27836 7.58741 7.74487 8.00909 8.11948 8.28243 8.47807 8.98757 9.56346 11.04516 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049422 B = 0.005298 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.413371 B = 5284.167590 C = 5584.603655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.175 4.175 3 C -0.124 4.124 4 C 0.548 3.452 5 O -0.552 6.552 6 N -0.601 5.601 7 C 0.114 3.886 8 C 0.052 3.948 9 N -0.536 5.536 10 C 0.194 3.806 11 C -0.510 4.510 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.038 3.962 20 C 0.084 3.916 21 H 0.113 0.887 22 H 0.111 0.889 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.024 0.976 29 H 0.096 0.904 30 H -0.009 1.009 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 8.769 8.752 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.178 4.178 3 C -0.180 4.180 4 C 0.338 3.662 5 O -0.432 6.432 6 N -0.333 5.333 7 C -0.009 4.009 8 C -0.077 4.077 9 N -0.261 5.261 10 C 0.069 3.931 11 C -0.549 4.549 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.091 4.091 20 C -0.038 4.038 21 H 0.131 0.869 22 H 0.130 0.870 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.043 0.957 29 H 0.115 0.885 30 H 0.008 0.992 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.604 8.342 9.117 16.283 hybrid contribution 0.292 -0.866 -0.688 1.144 sum -10.311 7.475 8.429 15.273 Atomic orbital electron populations 1.24488 0.94481 1.02993 0.93210 1.21680 0.95796 0.94615 1.05677 1.21258 1.00960 0.93653 1.02131 1.18532 0.81280 0.88732 0.77689 1.90756 1.67707 1.35799 1.48960 1.48106 1.12490 1.14205 1.58505 1.21971 0.94058 0.86411 0.98434 1.22405 0.96562 0.95251 0.93485 1.62098 1.25249 1.04461 1.34314 1.19721 0.92386 0.96691 0.84311 1.21105 1.15173 1.23794 0.94814 0.91854 1.24989 0.97719 0.96869 0.94937 1.69951 1.39495 1.44108 1.00233 0.86547 0.81778 0.81516 0.77497 1.20231 1.21350 1.20131 1.22441 0.95423 0.96351 0.94928 1.22864 0.98232 0.88116 0.94636 0.86910 0.87046 0.90081 0.91456 0.90438 0.90882 0.89420 0.95737 0.88549 0.99153 0.95050 0.92823 0.95610 0.90076 0.87440 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 13.92 28.92 0.40 -0.74 16 2 C -0.17 -2.05 5.68 -102.84 -0.58 -2.64 16 3 C -0.12 -1.05 7.96 36.01 0.29 -0.76 16 4 C 0.55 8.70 7.49 -12.67 -0.09 8.60 16 5 O -0.55 -10.56 15.90 5.26 0.08 -10.48 16 6 N -0.60 -9.45 3.00 -173.57 -0.52 -9.97 16 7 C 0.11 1.93 6.64 -3.37 -0.02 1.90 16 8 C 0.05 1.03 5.47 -3.47 -0.02 1.01 16 9 N -0.54 -11.26 4.62 -235.47 -1.09 -12.35 16 10 C 0.19 4.96 4.72 -4.98 -0.02 4.93 16 11 C -0.51 -14.07 8.41 -34.44 -0.29 -14.36 16 12 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 15 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 20 C 0.08 1.14 4.82 -3.60 -0.02 1.12 16 21 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 22 H 0.11 1.24 7.67 -52.49 -0.40 0.84 16 23 H 0.08 0.59 6.81 -51.93 -0.35 0.23 16 24 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 25 H 0.08 0.69 6.04 -51.93 -0.31 0.37 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.09 1.50 7.04 -51.93 -0.37 1.13 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.10 2.01 6.67 -51.93 -0.35 1.67 16 30 H -0.01 -0.26 8.13 -51.92 -0.42 -0.68 16 31 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 35 H 0.11 1.15 3.25 -52.38 -0.17 0.98 16 36 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -31.95 289.39 -7.16 -39.11 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.24 Total: -2.55 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.48 Total: 1.18 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.87 Total: -48.02 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.95 -7.16 -39.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142511843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.711 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds