Wall clock time and date at job start Sun Mar 29 2020 22:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33000 * 1 3 3 C 1.50703 * 119.99942 * 2 1 4 4 C 1.47102 * 119.99565 * 180.02562 * 2 1 3 5 5 O 1.21615 * 120.00153 * 337.28911 * 4 2 1 6 6 N 1.34776 * 119.99719 * 157.01930 * 4 2 1 7 7 C 1.47079 * 120.88132 * 173.62082 * 6 4 2 8 8 C 1.53695 * 108.28052 * 128.75395 * 7 6 4 9 9 N 1.46896 * 109.25645 * 54.07900 * 8 7 6 10 10 C 1.46901 * 110.99868 * 172.60828 * 9 8 7 11 11 C 1.50692 * 109.47174 * 294.30478 * 10 9 8 12 12 H 1.07993 * 120.00148 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00061 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99596 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00151 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46942 * 60.00124 * 15 13 11 17 17 H 1.48502 * 109.47025 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46959 * 299.99813 * 15 13 11 19 19 C 1.46903 * 111.27176 * 296.75867 * 9 8 7 20 20 C 1.47087 * 120.88096 * 353.89286 * 6 4 2 21 21 H 1.08002 * 119.99499 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.00119 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47287 * 276.65004 * 3 2 1 24 24 H 1.08998 * 109.47044 * 36.65702 * 3 2 1 25 25 H 1.09000 * 109.46462 * 156.65101 * 3 2 1 26 26 H 1.09001 * 109.62635 * 248.52050 * 7 6 4 27 27 H 1.09000 * 109.63041 * 9.09670 * 7 6 4 28 28 H 1.09002 * 109.64367 * 294.07990 * 8 7 6 29 29 H 1.08998 * 109.42196 * 173.95192 * 8 7 6 30 30 H 1.09009 * 109.46742 * 54.30847 * 10 9 8 31 31 H 1.08998 * 109.47297 * 174.29792 * 10 9 8 32 32 H 0.97005 * 119.99724 * 179.97438 * 14 13 11 33 33 H 1.08999 * 109.48973 * 303.14750 * 19 9 8 34 34 H 1.08997 * 109.49327 * 183.06439 * 19 9 8 35 35 H 1.08998 * 109.62899 * 350.89809 * 20 6 4 36 36 H 1.09000 * 109.62810 * 111.47986 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0835 1.3051 0.0000 4 6 2.0654 -1.2740 -0.0006 5 8 1.5280 -2.2865 0.4056 6 7 3.3329 -1.3201 -0.4563 7 6 4.1334 -2.5484 -0.3381 8 6 4.7214 -2.8754 -1.7200 9 7 5.4515 -1.7051 -2.2251 10 6 6.1757 -2.0297 -3.4613 11 6 7.2579 -3.0342 -3.1604 12 1 7.3944 -3.3951 -2.1517 13 6 8.0739 -3.4927 -4.1729 14 7 7.9073 -3.0535 -5.4014 15 14 9.4159 -4.7374 -3.7998 16 1 8.8054 -5.9718 -3.2444 17 1 10.1479 -5.0656 -5.0495 18 1 10.3616 -4.1636 -2.8090 19 6 4.5514 -0.5618 -2.4270 20 6 3.9544 -0.1417 -1.0797 21 1 -0.5399 0.9354 0.0004 22 1 -0.5400 -0.9352 -0.0004 23 1 2.1621 1.6793 -1.0207 24 1 1.5512 2.0320 0.6135 25 1 3.0822 1.1479 0.4073 26 1 4.9397 -2.3924 0.3786 27 1 3.4978 -3.3691 -0.0056 28 1 3.9165 -3.1278 -2.4103 29 1 5.4044 -3.7204 -1.6325 30 1 5.4817 -2.4502 -4.1892 31 1 6.6241 -1.1234 -3.8684 32 1 8.4816 -3.3757 -6.1137 33 1 3.7489 -0.8465 -3.1075 34 1 5.1112 0.2712 -2.8523 35 1 3.2004 0.6293 -1.2377 36 1 4.7438 0.2411 -0.4329 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142511843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:32 Heat of formation + Delta-G solvation = -11.948005 kcal Electronic energy + Delta-G solvation = -17289.128022 eV Core-core repulsion = 14580.700138 eV Total energy + Delta-G solvation = -2708.427884 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41707 -39.02941 -36.33069 -35.50126 -34.32718 -32.10209 -30.08724 -28.44586 -27.30993 -25.05192 -24.11196 -23.14859 -21.23475 -19.53451 -18.51542 -17.73877 -16.94491 -16.68761 -16.53938 -16.04331 -15.62583 -15.52025 -15.10729 -14.46951 -14.38415 -14.14711 -13.95854 -13.58314 -13.13915 -13.00364 -12.79153 -12.57578 -12.48095 -12.34172 -12.21249 -11.96820 -11.65622 -11.33498 -10.79902 -10.61644 -10.30026 -9.74593 -9.08372 -8.21817 -6.31999 0.47528 1.41769 1.44448 1.52312 1.93346 2.17987 2.39966 3.10325 3.21379 3.50760 3.93561 4.01274 4.03727 4.20897 4.27305 4.40173 4.45536 4.60201 4.72884 4.76505 4.82674 4.89358 4.91680 4.99909 5.13705 5.13961 5.21928 5.34891 5.42879 5.59760 5.63533 6.01468 6.18960 6.42241 6.57108 6.83025 7.06479 7.37854 8.89169 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049422 B = 0.005298 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.413371 B = 5284.167590 C = 5584.603655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.196 4.196 3 C -0.122 4.122 4 C 0.540 3.460 5 O -0.596 6.596 6 N -0.606 5.606 7 C 0.123 3.877 8 C 0.058 3.942 9 N -0.538 5.538 10 C 0.208 3.792 11 C -0.526 4.526 12 H 0.065 0.935 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.969 3.031 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.033 3.967 20 C 0.093 3.907 21 H 0.154 0.846 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.006 0.994 29 H 0.079 0.921 30 H -0.044 1.044 31 H 0.013 0.987 32 H 0.265 0.735 33 H 0.015 0.985 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 10.375 10.074 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.199 4.199 3 C -0.177 4.177 4 C 0.332 3.668 5 O -0.479 6.479 6 N -0.337 5.337 7 C 0.000 4.000 8 C -0.071 4.071 9 N -0.263 5.263 10 C 0.082 3.918 11 C -0.564 4.564 12 H 0.083 0.917 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.793 3.207 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.096 4.096 20 C -0.029 4.029 21 H 0.172 0.828 22 H 0.112 0.888 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.024 0.976 29 H 0.097 0.903 30 H -0.026 1.026 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.110 0.890 35 H 0.163 0.837 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.963 9.977 10.454 18.138 hybrid contribution 0.293 -1.350 -1.110 1.772 sum -10.670 8.627 9.344 16.600 Atomic orbital electron populations 1.24783 0.93999 1.04124 0.90239 1.21742 0.96277 0.93863 1.08032 1.21276 1.00621 0.92197 1.03647 1.19340 0.80991 0.89936 0.76522 1.90728 1.68483 1.37790 1.50853 1.48216 1.12720 1.14139 1.58658 1.21738 0.94374 0.87470 0.96381 1.22315 0.95447 0.94524 0.94809 1.62035 1.26742 1.05820 1.31714 1.19382 0.91798 0.95184 0.85420 1.21432 1.15728 1.24290 0.94975 0.91721 1.25898 1.00134 0.98797 0.94644 1.70077 1.40652 1.45496 1.01238 0.85444 0.78721 0.78976 0.77536 1.19459 1.20899 1.19095 1.22636 0.94629 0.94997 0.97335 1.23075 0.99485 0.87936 0.92355 0.82810 0.88849 0.88409 0.88857 0.90780 0.89817 0.89865 0.97565 0.90260 1.02595 0.96926 0.92658 0.96678 0.88965 0.83678 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 13.92 66.65 0.93 -0.66 16 2 C -0.20 -4.06 5.68 -18.70 -0.11 -4.17 16 3 C -0.12 -1.53 7.96 71.24 0.57 -0.96 16 4 C 0.54 16.59 7.49 86.57 0.65 17.23 16 5 O -0.60 -22.91 15.90 -4.08 -0.06 -22.97 16 6 N -0.61 -18.42 3.00 -821.31 -2.47 -20.89 16 7 C 0.12 4.20 6.64 86.50 0.57 4.77 16 8 C 0.06 2.37 5.47 86.54 0.47 2.84 16 9 N -0.54 -22.96 4.62 -898.89 -4.15 -27.11 16 10 C 0.21 11.05 4.72 85.55 0.40 11.45 16 11 C -0.53 -29.60 8.41 25.60 0.22 -29.38 16 12 H 0.06 3.55 7.13 -2.91 -0.02 3.52 16 13 C 0.00 0.20 5.46 84.66 0.46 0.66 16 14 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 15 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 C 0.03 1.10 5.62 86.38 0.49 1.59 16 20 C 0.09 2.31 4.82 86.35 0.42 2.73 16 21 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 22 H 0.09 1.94 7.67 -2.91 -0.02 1.92 16 23 H 0.10 0.92 6.81 -2.39 -0.02 0.90 16 24 H 0.09 0.76 8.11 -2.39 -0.02 0.74 16 25 H 0.07 1.01 6.04 -2.39 -0.01 1.00 16 26 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.08 2.91 7.04 -2.39 -0.02 2.89 16 28 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 3.45 6.67 -2.39 -0.02 3.43 16 30 H -0.04 -2.57 8.13 -2.38 -0.02 -2.58 16 31 H 0.01 0.71 7.97 -2.39 -0.02 0.69 16 32 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 2.88 7.99 -2.39 -0.02 2.86 16 35 H 0.15 2.58 3.25 -2.81 -0.01 2.58 16 36 H 0.09 2.04 7.93 -2.39 -0.02 2.02 16 Total: -1.00 -71.41 289.39 1.75 -69.66 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.06 Total: 4.89 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 5.07 Total: 6.10 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -6.33 Total: -103.76 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.06 Total: -22.97 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.41 1.75 -69.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142511843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.712 kcal (2) G-P(sol) polarization free energy of solvation -71.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds