Wall clock time and date at job start Sun Mar 29 2020 22:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46906 * 109.46794 * 125.27501 * 3 2 1 5 5 C 1.46894 * 111.00003 * 294.30255 * 4 3 2 6 6 C 1.53244 * 109.33700 * 172.74541 * 5 4 3 7 7 N 1.47076 * 108.51977 * 53.83223 * 6 5 4 8 8 C 1.34778 * 120.88041 * 128.79185 * 7 6 5 9 9 O 1.21283 * 120.00330 * 180.02562 * 8 7 6 10 10 C 1.50699 * 120.00281 * 0.02562 * 8 7 6 11 11 C 1.50696 * 109.47254 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00330 * 0.02562 * 11 10 8 13 13 C 1.37887 * 119.99631 * 179.97438 * 11 10 8 14 14 N 1.31518 * 119.99321 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00253 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47146 * 89.99760 * 15 13 11 17 17 H 1.48501 * 109.46849 * 210.00110 * 15 13 11 18 18 H 1.48501 * 109.47050 * 329.99743 * 15 13 11 19 19 C 1.47076 * 118.23776 * 308.81219 * 7 6 5 20 20 C 1.46904 * 111.00027 * 170.00021 * 4 3 2 21 21 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 22 22 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 23 23 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 24 24 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 25 25 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 26 26 H 1.08995 * 109.49420 * 292.70449 * 5 4 3 27 27 H 1.08996 * 109.49561 * 52.78932 * 5 4 3 28 28 H 1.08998 * 109.62921 * 294.11871 * 6 5 4 29 29 H 1.08998 * 109.62699 * 173.53947 * 6 5 4 30 30 H 1.09007 * 109.46805 * 299.99949 * 10 8 7 31 31 H 1.08999 * 109.47522 * 59.99500 * 10 8 7 32 32 H 0.96997 * 119.99432 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.62820 * 291.47606 * 19 7 6 34 34 H 1.09005 * 109.78943 * 170.98894 * 19 7 6 35 35 H 1.09004 * 109.49206 * 307.21963 * 20 4 3 36 36 H 1.09001 * 109.48775 * 67.29402 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0009 1.3292 1.1308 5 6 2.2812 1.3329 2.4113 6 6 3.2853 1.1754 3.5582 7 7 4.3171 2.2146 3.4217 8 6 4.6392 3.0103 4.4608 9 8 5.4922 3.8625 4.3304 10 6 3.9394 2.8412 5.7847 11 6 4.4795 3.8450 6.7703 12 1 5.2520 4.5367 6.4682 13 6 3.9867 3.8812 8.0575 14 7 4.4577 4.7577 8.9175 15 14 2.6500 2.6853 8.5799 16 1 3.2739 1.4501 9.1185 17 1 1.8074 3.3126 9.6295 18 1 1.8063 2.3428 7.4069 19 6 4.9878 2.3627 2.1212 20 6 3.9168 2.4735 1.0310 21 1 -0.5401 0.9353 0.0045 22 1 -0.5400 -0.9353 -0.0045 23 1 1.8500 -0.9353 -0.0046 24 1 2.6173 1.4049 -0.9334 25 1 1.3589 2.1314 0.0945 26 1 1.7448 2.2749 2.5244 27 1 1.5723 0.5053 2.4325 28 1 3.7488 0.1902 3.5064 29 1 2.7722 1.2921 4.5127 30 1 2.8691 3.0005 5.6528 31 1 4.1129 1.8331 6.1613 32 1 4.1113 4.7828 9.8232 33 1 5.6149 1.4917 1.9313 34 1 5.6025 3.2630 2.1234 35 1 4.3939 2.4731 0.0509 36 1 3.3574 3.3996 1.1632 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:10 Heat of formation + Delta-G solvation = -3.079854 kcal Electronic energy + Delta-G solvation = -17127.958816 eV Core-core repulsion = 14419.915484 eV Total energy + Delta-G solvation = -2708.043332 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71964 -37.84823 -35.12304 -33.03905 -32.78583 -31.20390 -29.58916 -27.81436 -24.57165 -23.86957 -22.76277 -20.72675 -19.96241 -18.41789 -17.12796 -16.21090 -15.72247 -15.36772 -15.03086 -14.95397 -14.74899 -14.20996 -14.04651 -13.47313 -13.09495 -12.71891 -12.49501 -12.21393 -11.90809 -11.54251 -11.37515 -11.27126 -11.23168 -10.89144 -10.75703 -10.56744 -9.97198 -9.66019 -9.22027 -8.76543 -8.62652 -8.57639 -8.10279 -6.02974 -4.02467 1.99442 3.25859 3.31224 3.34134 3.47544 3.54972 3.86549 4.40425 4.66566 4.86287 4.89074 5.03260 5.14853 5.26707 5.28838 5.34281 5.41355 5.48991 5.54407 5.69323 5.73963 5.75530 5.94745 6.09724 6.17289 6.36230 6.40646 6.57722 6.88084 6.90394 6.90849 7.00629 7.54718 8.02715 8.55711 9.07962 9.17878 9.55462 11.10160 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.006031 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.286517 B = 4641.598451 C = 5359.375436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 C 0.079 3.921 4 N -0.535 5.535 5 C 0.041 3.959 6 C 0.115 3.885 7 N -0.632 5.632 8 C 0.525 3.475 9 O -0.532 6.532 10 C -0.027 4.027 11 C -0.512 4.512 12 H 0.092 0.908 13 C 0.069 3.931 14 N -0.897 5.897 15 Si 0.874 3.126 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.117 3.883 20 C 0.043 3.957 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.114 0.886 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 -10.850 -17.528 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.159 4.159 3 C -0.048 4.048 4 N -0.260 5.260 5 C -0.088 4.088 6 C -0.008 4.008 7 N -0.369 5.369 8 C 0.316 3.684 9 O -0.407 6.407 10 C -0.066 4.066 11 C -0.551 4.551 12 H 0.110 0.890 13 C -0.133 4.133 14 N -0.536 5.536 15 Si 0.700 3.300 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.006 4.006 20 C -0.086 4.086 21 H 0.112 0.888 22 H 0.117 0.883 23 H 0.132 0.868 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.972 -10.700 -17.390 21.576 hybrid contribution -1.347 -0.001 0.372 1.397 sum -8.318 -10.701 -17.018 21.756 Atomic orbital electron populations 1.23877 0.95944 1.01873 1.01542 1.22892 0.95471 0.98634 0.98941 1.21248 0.94264 0.94776 0.94535 1.61945 1.19229 1.42873 1.01929 1.22528 0.95939 1.01242 0.89095 1.21726 0.89104 0.91618 0.98394 1.48412 1.40471 1.36443 1.11611 1.21442 0.82344 0.79079 0.85567 1.90570 1.32774 1.33988 1.83330 1.19683 0.96845 0.99544 0.90572 1.21018 1.22760 1.17244 0.94033 0.89014 1.24980 0.96435 0.95485 0.96365 1.69898 1.42981 1.35565 1.05133 0.86898 0.82560 0.81730 0.78764 1.20049 1.21088 1.19157 1.21500 0.94218 1.02916 0.82001 1.22513 0.94877 0.91502 0.99709 0.88799 0.88306 0.86764 0.89914 0.94450 0.94269 0.89631 0.91147 0.88892 0.93802 0.94074 0.92599 0.91564 0.88859 0.89904 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 14.32 29.02 0.42 -1.10 16 2 C -0.14 -1.21 8.50 -36.02 -0.31 -1.52 16 3 C 0.08 0.75 5.41 -4.97 -0.03 0.72 16 4 N -0.53 -6.16 4.62 -235.76 -1.09 -7.25 16 5 C 0.04 0.50 5.47 -3.70 -0.02 0.48 16 6 C 0.12 1.64 6.50 -3.60 -0.02 1.62 16 7 N -0.63 -11.15 3.01 -172.47 -0.52 -11.67 16 8 C 0.52 11.98 7.70 -10.99 -0.08 11.90 16 9 O -0.53 -14.15 14.92 5.55 0.08 -14.07 16 10 C -0.03 -0.65 2.89 -29.04 -0.08 -0.73 16 11 C -0.51 -15.22 9.48 -34.44 -0.33 -15.55 16 12 H 0.09 3.10 7.00 -52.49 -0.37 2.73 16 13 C 0.07 2.02 5.47 -17.81 -0.10 1.92 16 14 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 15 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 19 C 0.12 1.74 6.59 -3.61 -0.02 1.72 16 20 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 21 H 0.09 0.72 7.84 -52.49 -0.41 0.30 16 22 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 23 H 0.11 0.96 8.06 -52.49 -0.42 0.54 16 24 H 0.08 0.70 7.97 -51.93 -0.41 0.28 16 25 H 0.04 0.36 7.78 -51.93 -0.40 -0.04 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.91 7.07 -51.93 -0.37 0.55 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.09 1.36 6.02 -51.93 -0.31 1.04 16 30 H 0.04 1.00 6.72 -51.92 -0.35 0.66 16 31 H 0.04 0.93 7.43 -51.93 -0.39 0.54 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.53 7.07 -51.93 -0.37 1.16 16 35 H 0.08 0.82 7.99 -51.93 -0.41 0.40 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 292.55 15.07 4.41 4.41 Total: -1.00 -33.64 292.55 -7.11 -40.74 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.50 Total: -1.10 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.60 Total: -0.04 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.83 Total: -46.22 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.07 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.64 -7.11 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.662 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds