Wall clock time and date at job start Sun Mar 29 2020 22:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46906 * 109.46794 * 125.27501 * 3 2 1 5 5 C 1.46894 * 111.00003 * 294.30255 * 4 3 2 6 6 C 1.53244 * 109.33700 * 172.74541 * 5 4 3 7 7 N 1.47076 * 108.51977 * 53.83223 * 6 5 4 8 8 C 1.34778 * 120.88041 * 128.79185 * 7 6 5 9 9 O 1.21283 * 120.00330 * 180.02562 * 8 7 6 10 10 C 1.50699 * 120.00281 * 0.02562 * 8 7 6 11 11 C 1.50696 * 109.47254 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00330 * 0.02562 * 11 10 8 13 13 C 1.37887 * 119.99631 * 179.97438 * 11 10 8 14 14 N 1.31518 * 119.99321 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00253 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47146 * 89.99760 * 15 13 11 17 17 H 1.48501 * 109.46849 * 210.00110 * 15 13 11 18 18 H 1.48501 * 109.47050 * 329.99743 * 15 13 11 19 19 C 1.47076 * 118.23776 * 308.81219 * 7 6 5 20 20 C 1.46904 * 111.00027 * 170.00021 * 4 3 2 21 21 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 22 22 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 23 23 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 24 24 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 25 25 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 26 26 H 1.08995 * 109.49420 * 292.70449 * 5 4 3 27 27 H 1.08996 * 109.49561 * 52.78932 * 5 4 3 28 28 H 1.08998 * 109.62921 * 294.11871 * 6 5 4 29 29 H 1.08998 * 109.62699 * 173.53947 * 6 5 4 30 30 H 1.09007 * 109.46805 * 299.99949 * 10 8 7 31 31 H 1.08999 * 109.47522 * 59.99500 * 10 8 7 32 32 H 0.96997 * 119.99432 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.62820 * 291.47606 * 19 7 6 34 34 H 1.09005 * 109.78943 * 170.98894 * 19 7 6 35 35 H 1.09004 * 109.49206 * 307.21963 * 20 4 3 36 36 H 1.09001 * 109.48775 * 67.29402 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0009 1.3292 1.1308 5 6 2.2812 1.3329 2.4113 6 6 3.2853 1.1754 3.5582 7 7 4.3171 2.2146 3.4217 8 6 4.6392 3.0103 4.4608 9 8 5.4922 3.8625 4.3304 10 6 3.9394 2.8412 5.7847 11 6 4.4795 3.8450 6.7703 12 1 5.2520 4.5367 6.4682 13 6 3.9867 3.8812 8.0575 14 7 4.4577 4.7577 8.9175 15 14 2.6500 2.6853 8.5799 16 1 3.2739 1.4501 9.1185 17 1 1.8074 3.3126 9.6295 18 1 1.8063 2.3428 7.4069 19 6 4.9878 2.3627 2.1212 20 6 3.9168 2.4735 1.0310 21 1 -0.5401 0.9353 0.0045 22 1 -0.5400 -0.9353 -0.0045 23 1 1.8500 -0.9353 -0.0046 24 1 2.6173 1.4049 -0.9334 25 1 1.3589 2.1314 0.0945 26 1 1.7448 2.2749 2.5244 27 1 1.5723 0.5053 2.4325 28 1 3.7488 0.1902 3.5064 29 1 2.7722 1.2921 4.5127 30 1 2.8691 3.0005 5.6528 31 1 4.1129 1.8331 6.1613 32 1 4.1113 4.7828 9.8232 33 1 5.6149 1.4917 1.9313 34 1 5.6025 3.2630 2.1234 35 1 4.3939 2.4731 0.0509 36 1 3.3574 3.3996 1.1632 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:09 Heat of formation + Delta-G solvation = -27.897653 kcal Electronic energy + Delta-G solvation = -17129.034997 eV Core-core repulsion = 14419.915484 eV Total energy + Delta-G solvation = -2709.119513 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11031 -39.17107 -36.28381 -35.07944 -33.91216 -32.47060 -31.39173 -28.95743 -25.92240 -25.06945 -24.27116 -22.02474 -20.59676 -19.83657 -19.16125 -17.74538 -17.08328 -16.51571 -16.46982 -16.15009 -16.00947 -15.63949 -15.05342 -14.88763 -14.61673 -14.16006 -13.77473 -13.54257 -13.30182 -12.86464 -12.72091 -12.44047 -12.39959 -12.24600 -12.20032 -11.86433 -11.74579 -11.47928 -10.79909 -10.56617 -10.27251 -9.78338 -9.29978 -8.27472 -6.36462 1.38077 1.38276 1.42845 1.52966 1.79083 2.09510 2.37513 2.94016 3.05560 3.75817 3.92304 3.96755 4.08820 4.21260 4.27818 4.35761 4.40133 4.56405 4.64263 4.66297 4.74314 4.78477 4.83450 4.86080 4.99981 5.05636 5.12937 5.43137 5.60941 5.75623 5.76771 5.98428 6.10362 6.23172 6.49768 6.80175 7.23471 7.40356 8.90307 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.006031 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.286517 B = 4641.598451 C = 5359.375436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C 0.080 3.920 4 N -0.535 5.535 5 C 0.047 3.953 6 C 0.107 3.893 7 N -0.622 5.622 8 C 0.519 3.481 9 O -0.588 6.588 10 C -0.021 4.021 11 C -0.536 4.536 12 H 0.026 0.974 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.959 3.041 16 H -0.259 1.259 17 H -0.284 1.284 18 H -0.229 1.229 19 C 0.113 3.887 20 C 0.052 3.948 21 H 0.094 0.906 22 H 0.111 0.889 23 H 0.118 0.882 24 H 0.095 0.905 25 H 0.034 0.966 26 H 0.026 0.974 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.269 0.731 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 -14.046 -18.899 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.169 4.169 3 C -0.047 4.047 4 N -0.260 5.260 5 C -0.082 4.082 6 C -0.015 4.015 7 N -0.357 5.357 8 C 0.309 3.691 9 O -0.467 6.467 10 C -0.061 4.061 11 C -0.574 4.574 12 H 0.045 0.955 13 C -0.194 4.194 14 N -0.593 5.593 15 Si 0.780 3.220 16 H -0.184 1.184 17 H -0.210 1.210 18 H -0.151 1.151 19 C -0.010 4.010 20 C -0.077 4.077 21 H 0.112 0.888 22 H 0.129 0.871 23 H 0.136 0.864 24 H 0.113 0.887 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.620 -13.945 -18.830 25.329 hybrid contribution -0.474 1.030 0.722 1.344 sum -10.094 -12.915 -18.108 24.425 Atomic orbital electron populations 1.24023 0.95799 1.02534 1.00165 1.22851 0.95663 0.98204 1.00169 1.21301 0.94014 0.95310 0.94056 1.61967 1.19678 1.42008 1.02353 1.22476 0.95479 1.01552 0.88692 1.22055 0.88740 0.91198 0.99547 1.48378 1.40469 1.35619 1.11203 1.21282 0.81890 0.79337 0.86551 1.90551 1.35243 1.36627 1.84295 1.19560 0.97609 0.98795 0.90095 1.21177 1.22086 1.17976 0.96201 0.95517 1.26158 0.99620 0.97820 0.95811 1.70098 1.45194 1.38170 1.05862 0.85559 0.78562 0.78482 0.79406 1.18397 1.20981 1.15124 1.21684 0.95197 1.02643 0.81481 1.22418 0.94233 0.91274 0.99758 0.88775 0.87073 0.86381 0.88730 0.94749 0.95528 0.87319 0.89054 0.88795 0.91651 0.91568 0.92249 0.89795 0.91160 0.87122 0.95823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 14.32 67.79 0.97 -1.31 16 2 C -0.15 -2.06 8.50 25.65 0.22 -1.84 16 3 C 0.08 1.25 5.41 85.56 0.46 1.72 16 4 N -0.54 -10.63 4.62 -899.81 -4.16 -14.79 16 5 C 0.05 0.99 5.47 86.39 0.47 1.46 16 6 C 0.11 2.70 6.50 86.35 0.56 3.27 16 7 N -0.62 -21.22 3.01 -817.96 -2.46 -23.68 16 8 C 0.52 24.02 7.70 87.66 0.68 24.70 16 9 O -0.59 -33.06 14.92 -3.04 -0.05 -33.10 16 10 C -0.02 -1.00 2.89 29.10 0.08 -0.91 16 11 C -0.54 -33.06 9.48 25.60 0.24 -32.82 16 12 H 0.03 1.94 7.00 -2.91 -0.02 1.92 16 13 C 0.00 0.14 5.47 84.66 0.46 0.60 16 14 N -0.95 -61.84 13.96 21.45 0.30 -61.54 16 15 Si 0.96 42.23 27.47 68.60 1.88 44.12 16 16 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.23 -8.61 6.54 99.48 0.65 -7.96 16 19 C 0.11 3.25 6.59 86.35 0.57 3.82 16 20 C 0.05 1.15 5.62 86.38 0.49 1.64 16 21 H 0.09 1.15 7.84 -2.91 -0.02 1.12 16 22 H 0.11 1.08 8.06 -2.91 -0.02 1.06 16 23 H 0.12 1.55 8.06 -2.91 -0.02 1.53 16 24 H 0.09 1.27 7.97 -2.39 -0.02 1.25 16 25 H 0.03 0.57 7.78 -2.39 -0.02 0.55 16 26 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.11 1.84 7.07 -2.39 -0.02 1.83 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.09 2.38 6.02 -2.39 -0.01 2.36 16 30 H 0.07 2.82 6.72 -2.38 -0.02 2.81 16 31 H 0.07 2.82 7.43 -2.39 -0.02 2.80 16 32 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.37 7.07 -2.38 -0.02 2.35 16 35 H 0.11 1.87 7.99 -2.38 -0.02 1.85 16 36 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -78.17 292.55 1.71 -76.46 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.99 Total: 12.24 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 5.20 Total: 0.30 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -6.32 Total: -100.01 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.05 Total: -33.10 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.12 kcal Total: -78.17 1.71 -76.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.559 kcal (2) G-P(sol) polarization free energy of solvation -78.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds