Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00224 * 2 1 4 4 H 1.48505 * 109.47128 * 269.99925 * 3 2 1 5 5 H 1.48498 * 109.47039 * 29.99754 * 3 2 1 6 6 H 1.48494 * 109.47252 * 149.99887 * 3 2 1 7 7 C 1.37876 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00315 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99627 * 180.02562 * 7 2 1 10 10 N 1.46909 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99965 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.67436 * 35.49577 * 11 10 9 13 13 C 1.53349 * 109.67483 * 156.03039 * 11 10 9 14 14 C 1.52904 * 108.68878 * 187.25207 * 13 11 10 15 15 N 1.45758 * 110.49123 * 309.27813 * 14 13 11 16 16 C 1.46505 * 117.94148 * 199.05980 * 15 14 13 17 17 C 1.53000 * 117.49866 * 3.01787 * 16 15 14 18 18 C 1.52995 * 117.49957 * 294.39279 * 16 15 14 19 19 C 1.33347 * 124.10998 * 19.03504 * 15 14 13 20 20 O 1.21284 * 118.24198 * 177.77364 * 19 15 14 21 21 C 1.50172 * 123.50922 * 357.80366 * 19 15 14 22 22 H 0.96996 * 119.99607 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47236 * 60.00618 * 9 7 2 24 24 H 1.09006 * 109.47206 * 300.00295 * 9 7 2 25 25 H 1.00902 * 111.00058 * 56.04500 * 10 9 7 26 26 H 1.08997 * 109.59922 * 307.02437 * 13 11 10 27 27 H 1.09006 * 109.59695 * 67.50703 * 13 11 10 28 28 H 1.08992 * 109.30519 * 188.95733 * 14 13 11 29 29 H 1.08997 * 109.11556 * 69.47300 * 14 13 11 30 30 H 1.08998 * 115.54613 * 148.72259 * 16 15 14 31 31 H 1.08994 * 117.49814 * 359.97438 * 17 16 15 32 32 H 1.08996 * 117.49654 * 145.02133 * 17 16 15 33 33 H 1.09001 * 117.50323 * 214.97872 * 18 16 15 34 34 H 1.09007 * 117.49864 * 0.02562 * 18 16 15 35 35 H 1.08997 * 109.39903 * 257.45011 * 21 19 15 36 36 H 1.08999 * 109.33087 * 137.66403 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5792 0.0010 11 6 5.4696 -2.6184 0.0009 12 1 5.8588 -1.7928 0.5970 13 6 5.9505 -3.9512 0.5874 14 6 7.4704 -3.8969 0.7454 15 7 8.0974 -3.4634 -0.4970 16 6 9.5216 -3.7513 -0.6841 17 6 10.2308 -4.5501 0.4113 18 6 10.5119 -3.0547 0.2512 19 6 7.4558 -2.8218 -1.4742 20 8 8.0919 -2.4737 -2.4464 21 6 5.9881 -2.5065 -1.4349 22 1 -0.4849 0.8400 -0.0004 23 1 3.8745 -0.6802 0.8912 24 1 3.8752 -0.6804 -0.8889 25 1 3.6259 -3.0953 -0.7806 26 1 5.4870 -4.1107 1.5610 27 1 5.6819 -4.7651 -0.0860 28 1 7.8408 -4.8874 1.0094 29 1 7.7219 -3.1945 1.5400 30 1 9.8357 -3.9202 -1.7141 31 1 9.6378 -4.8611 1.2713 32 1 11.0116 -5.2449 0.1020 33 1 11.4778 -2.7657 -0.1633 34 1 10.1038 -2.3825 1.0061 35 1 5.4496 -3.2098 -2.0701 36 1 5.8270 -1.4922 -1.8000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171996662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -5.683116 kcal Electronic energy + Delta-G solvation = -17072.108031 eV Core-core repulsion = 14363.951813 eV Total energy + Delta-G solvation = -2708.156218 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66577 -37.39653 -37.00282 -34.33510 -32.57235 -30.71262 -29.54078 -26.91896 -24.34836 -22.80435 -22.34099 -21.40336 -21.00072 -18.50902 -17.28693 -16.82104 -16.45315 -15.64944 -15.06211 -14.69000 -14.34196 -14.25772 -13.90922 -13.61444 -13.07672 -12.64608 -12.45682 -12.10027 -11.97525 -11.72049 -11.53813 -11.18992 -11.11278 -10.83535 -10.75445 -10.62560 -10.38446 -9.92984 -9.65316 -9.34271 -8.64711 -8.63119 -7.62326 -6.10044 -4.08700 2.62223 2.81186 3.26458 3.34274 3.35948 3.61495 4.38383 4.44784 4.56142 4.61911 4.73534 4.77297 4.79101 4.91262 5.22152 5.26064 5.28918 5.38072 5.48705 5.56403 5.61902 5.73316 5.79617 5.82187 5.93833 6.16659 6.24969 6.39498 6.69399 6.93860 7.40552 7.52603 7.78158 8.15922 8.20509 8.57614 8.97438 9.51516 11.03140 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041214 B = 0.005227 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.215267 B = 5355.949840 C = 5548.412553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.669 5.669 11 C 0.082 3.918 12 H 0.079 0.921 13 C -0.123 4.123 14 C 0.110 3.890 15 N -0.578 5.578 16 C 0.076 3.924 17 C -0.187 4.187 18 C -0.191 4.191 19 C 0.527 3.473 20 O -0.557 6.557 21 C -0.164 4.164 22 H 0.264 0.736 23 H 0.027 0.973 24 H -0.018 1.018 25 H 0.338 0.662 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.591 -8.769 2.029 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.557 4.557 8 H 0.098 0.902 9 C 0.035 3.965 10 N -0.298 5.298 11 C -0.029 4.029 12 H 0.097 0.903 13 C -0.162 4.162 14 C -0.013 4.013 15 N -0.310 5.310 16 C -0.029 4.029 17 C -0.224 4.224 18 C -0.230 4.230 19 C 0.316 3.684 20 O -0.436 6.436 21 C -0.205 4.205 22 H 0.074 0.926 23 H 0.045 0.955 24 H 0.000 1.000 25 H 0.156 0.844 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.617 -8.511 2.219 20.590 hybrid contribution 0.544 1.251 -0.838 1.601 sum 19.161 -7.260 1.381 20.537 Atomic orbital electron populations 1.69896 1.06170 1.26959 1.50721 1.24897 0.94741 0.98942 0.94624 0.86841 0.80297 0.83899 0.78565 1.20249 1.21095 1.19200 1.21033 0.88840 0.94856 1.50945 0.90227 1.20073 0.96774 0.84760 0.94909 1.60616 1.02858 1.16980 1.49373 1.21708 0.91055 0.97425 0.92733 0.90281 1.21919 0.92266 0.98284 1.03698 1.21540 0.94078 1.00208 0.85496 1.46853 1.08513 1.57084 1.18570 1.21653 0.80385 1.03792 0.97053 1.23363 1.03209 0.94941 1.00901 1.23343 1.01080 0.94978 1.03571 1.20258 0.90143 0.76417 0.81580 1.90683 1.67562 1.52561 1.32756 1.22554 0.91415 1.05025 1.01527 0.92580 0.95480 1.00043 0.84357 0.88622 0.91111 0.90267 0.91730 0.85235 0.87954 0.87900 0.88183 0.88549 0.88034 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.46 9.87 -34.44 -0.34 -14.80 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.16 3.77 4.32 -4.97 -0.02 3.75 16 10 N -0.67 -12.65 6.25 -107.75 -0.67 -13.33 16 11 C 0.08 1.24 2.53 -67.50 -0.17 1.07 16 12 H 0.08 1.26 7.81 -51.92 -0.41 0.85 16 13 C -0.12 -1.44 5.64 -26.60 -0.15 -1.59 16 14 C 0.11 1.10 5.53 -4.49 -0.02 1.08 16 15 N -0.58 -7.22 3.14 -167.39 -0.53 -7.74 16 16 C 0.08 0.84 5.91 -67.93 -0.40 0.43 16 17 C -0.19 -1.45 9.66 -26.73 -0.26 -1.71 16 18 C -0.19 -1.76 10.36 -26.73 -0.28 -2.03 16 19 C 0.53 8.16 7.47 -11.88 -0.09 8.07 16 20 O -0.56 -10.47 16.41 5.55 0.09 -10.37 16 21 C -0.16 -2.46 5.33 -28.10 -0.15 -2.61 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.03 0.65 7.12 -51.93 -0.37 0.28 16 24 H -0.02 -0.42 7.13 -51.93 -0.37 -0.79 16 25 H 0.34 6.19 8.32 -39.29 -0.33 5.87 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.08 0.63 6.40 -51.93 -0.33 0.30 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.13 1.55 7.60 -51.93 -0.39 1.16 16 31 H 0.10 0.71 6.18 -51.93 -0.32 0.39 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.43 7.90 -51.93 -0.41 1.02 16 36 H 0.10 1.65 7.79 -51.93 -0.40 1.24 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -32.07 291.54 -8.05 -40.12 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.46 Total: 3.17 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.98 Total: -6.42 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.43 Total: -47.61 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.07 -8.05 -40.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171996662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.441 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds