Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00224 * 2 1 4 4 H 1.48505 * 109.47128 * 269.99925 * 3 2 1 5 5 H 1.48498 * 109.47039 * 29.99754 * 3 2 1 6 6 H 1.48494 * 109.47252 * 149.99887 * 3 2 1 7 7 C 1.37876 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00315 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99627 * 180.02562 * 7 2 1 10 10 N 1.46909 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99965 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.67436 * 35.49577 * 11 10 9 13 13 C 1.53349 * 109.67483 * 156.03039 * 11 10 9 14 14 C 1.52904 * 108.68878 * 187.25207 * 13 11 10 15 15 N 1.45758 * 110.49123 * 309.27813 * 14 13 11 16 16 C 1.46505 * 117.94148 * 199.05980 * 15 14 13 17 17 C 1.53000 * 117.49866 * 3.01787 * 16 15 14 18 18 C 1.52995 * 117.49957 * 294.39279 * 16 15 14 19 19 C 1.33347 * 124.10998 * 19.03504 * 15 14 13 20 20 O 1.21284 * 118.24198 * 177.77364 * 19 15 14 21 21 C 1.50172 * 123.50922 * 357.80366 * 19 15 14 22 22 H 0.96996 * 119.99607 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47236 * 60.00618 * 9 7 2 24 24 H 1.09006 * 109.47206 * 300.00295 * 9 7 2 25 25 H 1.00902 * 111.00058 * 56.04500 * 10 9 7 26 26 H 1.08997 * 109.59922 * 307.02437 * 13 11 10 27 27 H 1.09006 * 109.59695 * 67.50703 * 13 11 10 28 28 H 1.08992 * 109.30519 * 188.95733 * 14 13 11 29 29 H 1.08997 * 109.11556 * 69.47300 * 14 13 11 30 30 H 1.08998 * 115.54613 * 148.72259 * 16 15 14 31 31 H 1.08994 * 117.49814 * 359.97438 * 17 16 15 32 32 H 1.08996 * 117.49654 * 145.02133 * 17 16 15 33 33 H 1.09001 * 117.50323 * 214.97872 * 18 16 15 34 34 H 1.09007 * 117.49864 * 0.02562 * 18 16 15 35 35 H 1.08997 * 109.39903 * 257.45011 * 21 19 15 36 36 H 1.08999 * 109.33087 * 137.66403 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5792 0.0010 11 6 5.4696 -2.6184 0.0009 12 1 5.8588 -1.7928 0.5970 13 6 5.9505 -3.9512 0.5874 14 6 7.4704 -3.8969 0.7454 15 7 8.0974 -3.4634 -0.4970 16 6 9.5216 -3.7513 -0.6841 17 6 10.2308 -4.5501 0.4113 18 6 10.5119 -3.0547 0.2512 19 6 7.4558 -2.8218 -1.4742 20 8 8.0919 -2.4737 -2.4464 21 6 5.9881 -2.5065 -1.4349 22 1 -0.4849 0.8400 -0.0004 23 1 3.8745 -0.6802 0.8912 24 1 3.8752 -0.6804 -0.8889 25 1 3.6259 -3.0953 -0.7806 26 1 5.4870 -4.1107 1.5610 27 1 5.6819 -4.7651 -0.0860 28 1 7.8408 -4.8874 1.0094 29 1 7.7219 -3.1945 1.5400 30 1 9.8357 -3.9202 -1.7141 31 1 9.6378 -4.8611 1.2713 32 1 11.0116 -5.2449 0.1020 33 1 11.4778 -2.7657 -0.1633 34 1 10.1038 -2.3825 1.0061 35 1 5.4496 -3.2098 -2.0701 36 1 5.8270 -1.4922 -1.8000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171996662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -28.751037 kcal Electronic energy + Delta-G solvation = -17073.108331 eV Core-core repulsion = 14363.951813 eV Total energy + Delta-G solvation = -2709.156518 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.73994 -38.35317 -38.31564 -35.69941 -34.42668 -32.12932 -30.67073 -28.69755 -25.47499 -23.81081 -23.10871 -23.09959 -22.20542 -19.62822 -18.90916 -18.17146 -17.51869 -16.79293 -16.70293 -15.82535 -15.64408 -15.46249 -15.25196 -14.87295 -14.58707 -14.33544 -13.71552 -13.51774 -13.15886 -12.91623 -12.67948 -12.47951 -12.30820 -12.11643 -11.97306 -11.82441 -11.65420 -11.47513 -11.37409 -10.97398 -10.80910 -9.57048 -9.18754 -8.30518 -6.34443 1.34569 1.35480 1.45588 1.45995 1.85214 2.32844 2.88861 3.04030 3.27879 3.60042 3.70519 3.75479 3.82804 4.01185 4.02336 4.10634 4.41006 4.41781 4.57552 4.63963 4.70303 4.78110 4.79527 4.92541 5.03123 5.07437 5.14742 5.20125 5.25951 5.48748 5.52631 5.93135 6.35764 6.51359 6.63176 6.75997 7.03833 7.30585 8.86113 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041214 B = 0.005227 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.215267 B = 5355.949840 C = 5548.412553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.250 1.250 7 C -0.526 4.526 8 H 0.042 0.958 9 C 0.173 3.827 10 N -0.672 5.672 11 C 0.085 3.915 12 H 0.074 0.926 13 C -0.115 4.115 14 C 0.109 3.891 15 N -0.570 5.570 16 C 0.041 3.959 17 C -0.154 4.154 18 C -0.191 4.191 19 C 0.523 3.477 20 O -0.600 6.600 21 C -0.159 4.159 22 H 0.267 0.733 23 H 0.027 0.973 24 H -0.016 1.016 25 H 0.340 0.660 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.000 -9.322 3.355 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.174 1.174 7 C -0.565 4.565 8 H 0.060 0.940 9 C 0.044 3.956 10 N -0.301 5.301 11 C -0.026 4.026 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.013 4.013 15 N -0.300 5.300 16 C -0.063 4.063 17 C -0.191 4.191 18 C -0.230 4.230 19 C 0.312 3.688 20 O -0.482 6.482 21 C -0.200 4.200 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.002 0.998 25 H 0.159 0.841 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.056 -9.107 3.585 23.220 hybrid contribution -0.210 1.313 -1.235 1.814 sum 20.846 -7.794 2.351 22.379 Atomic orbital electron populations 1.70043 1.08095 1.28160 1.52370 1.25813 0.95551 1.03058 0.94268 0.85748 0.79478 0.78885 0.79010 1.19560 1.20608 1.17358 1.21342 0.91378 0.93495 1.50246 0.93993 1.19805 0.93706 0.87323 0.94751 1.60537 1.05453 1.14434 1.49676 1.21779 0.88389 0.99539 0.92868 0.90798 1.21855 0.93516 0.96042 1.03894 1.21743 0.92624 1.02353 0.84531 1.46883 1.09290 1.55481 1.18356 1.21771 0.79780 1.07306 0.97488 1.23496 1.02251 0.94164 0.99204 1.23400 1.00606 0.96364 1.02607 1.20229 0.90015 0.76670 0.81853 1.90659 1.68255 1.54717 1.34601 1.22447 0.91801 1.04206 1.01556 0.92375 0.95523 0.99820 0.84123 0.87813 0.90498 0.86992 0.90408 0.87010 0.86303 0.86013 0.87480 0.88752 0.87385 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.73 13.96 21.45 0.30 -58.44 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.95 43.94 27.47 68.60 1.88 45.82 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.53 -29.85 9.87 25.60 0.25 -29.59 16 8 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 9 C 0.17 7.94 4.32 85.56 0.37 8.31 16 10 N -0.67 -24.94 6.25 -494.82 -3.10 -28.04 16 11 C 0.09 2.45 2.53 45.06 0.11 2.56 16 12 H 0.07 2.22 7.81 -2.38 -0.02 2.20 16 13 C -0.11 -2.36 5.64 30.68 0.17 -2.19 16 14 C 0.11 1.80 5.53 86.49 0.48 2.28 16 15 N -0.57 -13.07 3.14 -802.68 -2.52 -15.59 16 16 C 0.04 0.82 5.91 44.99 0.27 1.08 16 17 C -0.15 -1.78 9.66 30.60 0.30 -1.48 16 18 C -0.19 -3.01 10.36 30.59 0.32 -2.69 16 19 C 0.52 15.89 7.47 87.71 0.66 16.55 16 20 O -0.60 -22.83 16.41 -3.04 -0.05 -22.88 16 21 C -0.16 -4.69 5.33 29.71 0.16 -4.53 16 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 23 H 0.03 1.24 7.12 -2.39 -0.02 1.22 16 24 H -0.02 -0.72 7.13 -2.38 -0.02 -0.74 16 25 H 0.34 12.41 8.32 -89.69 -0.75 11.66 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 1.52 8.12 -2.38 -0.02 1.50 16 28 H 0.11 1.21 6.40 -2.39 -0.02 1.20 16 29 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 2.63 7.60 -2.39 -0.02 2.62 16 31 H 0.12 1.01 6.18 -2.39 -0.01 1.00 16 32 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.11 3.01 7.90 -2.39 -0.02 2.99 16 36 H 0.08 2.72 7.79 -2.39 -0.02 2.70 16 Total: -1.00 -71.02 291.54 0.33 -70.69 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.27 Total: 17.06 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 3.54 Total: -8.63 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -5.32 Total: -102.06 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -71.02 0.33 -70.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171996662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.939 kcal (2) G-P(sol) polarization free energy of solvation -71.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds