Wall clock time and date at job start Sun Mar 29 2020 21:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00155 * 2 1 4 4 H 1.48495 * 109.47083 * 269.99736 * 3 2 1 5 5 H 1.48499 * 109.47088 * 29.99713 * 3 2 1 6 6 H 1.48505 * 109.47266 * 149.99487 * 3 2 1 7 7 C 1.37879 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99985 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99985 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.18525 * 35.63291 * 11 10 9 13 13 C 1.52821 * 109.22485 * 276.25674 * 11 10 9 14 14 C 1.53739 * 109.89589 * 178.21042 * 13 11 10 15 15 N 1.47388 * 106.64679 * 52.80951 * 14 13 11 16 16 C 1.33684 * 127.75531 * 124.98055 * 15 14 13 17 17 O 1.21282 * 125.38795 * 19.42471 * 16 15 14 18 18 C 1.51502 * 109.21443 * 199.38318 * 16 15 14 19 19 C 1.54554 * 104.01471 * 334.88454 * 18 16 15 20 20 C 1.47755 * 121.30740 * 306.02649 * 15 14 13 21 21 H 1.08998 * 110.16510 * 295.31952 * 20 15 14 22 22 C 1.53044 * 107.18795 * 55.31540 * 20 15 14 23 23 H 0.97005 * 120.00223 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46904 * 60.00031 * 9 7 2 25 25 H 1.08997 * 109.47300 * 300.00415 * 9 7 2 26 26 H 1.00903 * 110.99814 * 56.04854 * 10 9 7 27 27 H 1.09000 * 109.40321 * 298.34560 * 13 11 10 28 28 H 1.09005 * 109.39656 * 58.08406 * 13 11 10 29 29 H 1.09004 * 110.01403 * 172.09581 * 14 13 11 30 30 H 1.08999 * 110.01427 * 293.42781 * 14 13 11 31 31 H 1.09001 * 110.51873 * 93.51449 * 18 16 15 32 32 H 1.08995 * 110.51889 * 216.11273 * 18 16 15 33 33 H 1.08997 * 110.70527 * 139.35122 * 19 18 16 34 34 H 1.09008 * 110.70172 * 262.41160 * 19 18 16 35 35 H 1.09002 * 109.62738 * 185.82304 * 22 20 15 36 36 H 1.09001 * 109.62843 * 65.44409 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0018 11 6 1.5053 -4.9070 0.0012 12 1 0.5997 -4.8231 -0.5996 13 6 1.1255 -5.2742 1.4352 14 6 0.3517 -6.6026 1.4478 15 7 1.1770 -7.5788 0.7141 16 6 1.6091 -8.7698 1.1407 17 8 1.1370 -9.3989 2.0639 18 6 2.7814 -9.2096 0.2876 19 6 2.5718 -8.4638 -1.0497 20 6 1.6571 -7.3027 -0.6557 21 1 0.8135 -7.2303 -1.3421 22 6 2.4183 -5.9758 -0.6092 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 2.8398 -3.5484 0.7836 27 1 2.0302 -5.3764 2.0345 28 1 0.5004 -4.4870 1.8570 29 1 0.2018 -6.9373 2.4743 30 1 -0.6110 -6.4782 0.9519 31 1 3.7228 -8.9104 0.7485 32 1 2.7583 -10.2884 0.1336 33 1 3.5205 -8.0918 -1.4363 34 1 2.0867 -9.1114 -1.7802 35 1 2.7024 -5.6811 -1.6195 36 1 3.3121 -6.0877 0.0045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172146965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:23 Heat of formation + Delta-G solvation = -40.679542 kcal Electronic energy + Delta-G solvation = -17171.984474 eV Core-core repulsion = 14462.310697 eV Total energy + Delta-G solvation = -2709.673777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77518 -37.64757 -35.79325 -33.59745 -32.57767 -30.72929 -29.23936 -27.01940 -25.19774 -23.23909 -22.02553 -21.05329 -20.61437 -19.23580 -16.69768 -16.32259 -15.89595 -15.66616 -14.80527 -14.64799 -14.14179 -13.98731 -13.74917 -13.32543 -13.03632 -12.63946 -12.46338 -12.23336 -11.96568 -11.77421 -11.29489 -11.23932 -10.98686 -10.87977 -10.71355 -10.55340 -10.33338 -9.93254 -9.72707 -9.22788 -8.63614 -8.51617 -7.35765 -6.07544 -4.09715 2.54002 3.01720 3.29459 3.35498 3.38930 4.25496 4.38397 4.41681 4.63681 4.85447 4.97770 5.07357 5.19051 5.28051 5.28932 5.36996 5.52853 5.56099 5.60817 5.70701 5.76246 5.85514 6.00686 6.07769 6.14771 6.34655 6.49787 6.63937 7.17955 7.22593 7.37321 7.73678 8.07603 8.17870 8.32029 8.55016 8.99512 9.55617 11.03426 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.053015 B = 0.004783 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.021829 B = 5852.279114 C = 6105.519722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.684 5.684 11 C 0.087 3.913 12 H 0.071 0.929 13 C -0.164 4.164 14 C 0.133 3.867 15 N -0.618 5.618 16 C 0.520 3.480 17 O -0.542 6.542 18 C -0.154 4.154 19 C -0.125 4.125 20 C 0.126 3.874 21 H 0.083 0.917 22 C -0.112 4.112 23 H 0.262 0.738 24 H 0.027 0.973 25 H -0.013 1.013 26 H 0.329 0.671 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -15.187 -1.679 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.313 5.313 11 C -0.024 4.024 12 H 0.089 0.911 13 C -0.203 4.203 14 C 0.011 3.989 15 N -0.352 5.352 16 C 0.308 3.692 17 O -0.419 6.419 18 C -0.194 4.194 19 C -0.163 4.163 20 C 0.022 3.978 21 H 0.101 0.899 22 C -0.151 4.151 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.005 0.995 26 H 0.146 0.854 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.716 -15.304 -1.819 15.854 hybrid contribution -0.024 1.082 0.921 1.421 sum 3.692 -14.223 -0.898 14.721 Atomic orbital electron populations 1.69954 1.06091 1.26842 1.50825 1.24982 0.94864 0.99376 0.95276 0.86488 0.79692 0.83008 0.78150 1.20593 1.21295 1.19856 1.21184 0.93511 0.90280 1.50472 0.92005 1.19582 0.90596 0.87330 0.95718 1.60773 1.20845 1.00909 1.48758 1.21470 0.96578 0.90908 0.93443 0.91056 1.22775 1.00989 0.96560 1.00016 1.21735 0.93177 0.87323 0.96647 1.48690 1.51939 1.17816 1.16772 1.20726 0.83869 0.80715 0.83875 1.90701 1.61541 1.57738 1.31957 1.22391 0.98415 1.02346 0.96289 1.22238 1.00975 0.96351 0.96696 1.21797 0.97193 0.95590 0.83187 0.89892 1.21989 0.98341 0.92273 1.02516 0.92881 0.95502 0.99484 0.85401 0.91764 0.90238 0.89883 0.91146 0.87886 0.88519 0.88967 0.89959 0.89973 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.27 9.32 -34.44 -0.32 -14.60 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.19 4.88 5.23 -4.98 -0.03 4.85 16 10 N -0.68 -13.69 6.22 -107.96 -0.67 -14.36 16 11 C 0.09 1.39 2.37 -67.68 -0.16 1.23 16 12 H 0.07 1.22 7.79 -51.93 -0.40 0.82 16 13 C -0.16 -2.42 5.30 -26.44 -0.14 -2.56 16 14 C 0.13 1.78 6.96 -3.17 -0.02 1.76 16 15 N -0.62 -7.99 2.94 -163.97 -0.48 -8.48 16 16 C 0.52 7.18 8.01 -11.08 -0.09 7.09 16 17 O -0.54 -9.60 17.86 5.56 0.10 -9.50 16 18 C -0.15 -1.44 6.92 -26.67 -0.18 -1.63 16 19 C -0.12 -1.00 6.70 -25.93 -0.17 -1.17 16 20 C 0.13 1.36 3.55 -67.24 -0.24 1.12 16 21 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.11 -1.42 4.95 -26.58 -0.13 -1.55 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.03 0.73 8.05 -51.93 -0.42 0.32 16 25 H -0.01 -0.33 7.29 -51.93 -0.38 -0.71 16 26 H 0.33 6.42 8.48 -39.29 -0.33 6.09 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.30 7.30 -51.93 -0.38 0.92 16 29 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.62 7.81 -51.93 -0.41 0.22 16 34 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 291.94 15.07 4.40 4.40 Total: -1.00 -31.59 291.94 -8.19 -39.78 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.66 Total: 1.42 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.58 Total: -3.95 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.42 Total: -48.49 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.10 Total: -9.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.59 -8.19 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172146965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.898 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds