Wall clock time and date at job start Sun Mar 29 2020 21:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00155 * 2 1 4 4 H 1.48495 * 109.47083 * 269.99736 * 3 2 1 5 5 H 1.48499 * 109.47088 * 29.99713 * 3 2 1 6 6 H 1.48505 * 109.47266 * 149.99487 * 3 2 1 7 7 C 1.37879 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99985 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99985 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.18525 * 35.63291 * 11 10 9 13 13 C 1.52821 * 109.22485 * 276.25674 * 11 10 9 14 14 C 1.53739 * 109.89589 * 178.21042 * 13 11 10 15 15 N 1.47388 * 106.64679 * 52.80951 * 14 13 11 16 16 C 1.33684 * 127.75531 * 124.98055 * 15 14 13 17 17 O 1.21282 * 125.38795 * 19.42471 * 16 15 14 18 18 C 1.51502 * 109.21443 * 199.38318 * 16 15 14 19 19 C 1.54554 * 104.01471 * 334.88454 * 18 16 15 20 20 C 1.47755 * 121.30740 * 306.02649 * 15 14 13 21 21 H 1.08998 * 110.16510 * 295.31952 * 20 15 14 22 22 C 1.53044 * 107.18795 * 55.31540 * 20 15 14 23 23 H 0.97005 * 120.00223 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46904 * 60.00031 * 9 7 2 25 25 H 1.08997 * 109.47300 * 300.00415 * 9 7 2 26 26 H 1.00903 * 110.99814 * 56.04854 * 10 9 7 27 27 H 1.09000 * 109.40321 * 298.34560 * 13 11 10 28 28 H 1.09005 * 109.39656 * 58.08406 * 13 11 10 29 29 H 1.09004 * 110.01403 * 172.09581 * 14 13 11 30 30 H 1.08999 * 110.01427 * 293.42781 * 14 13 11 31 31 H 1.09001 * 110.51873 * 93.51449 * 18 16 15 32 32 H 1.08995 * 110.51889 * 216.11273 * 18 16 15 33 33 H 1.08997 * 110.70527 * 139.35122 * 19 18 16 34 34 H 1.09008 * 110.70172 * 262.41160 * 19 18 16 35 35 H 1.09002 * 109.62738 * 185.82304 * 22 20 15 36 36 H 1.09001 * 109.62843 * 65.44409 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0018 11 6 1.5053 -4.9070 0.0012 12 1 0.5997 -4.8231 -0.5996 13 6 1.1255 -5.2742 1.4352 14 6 0.3517 -6.6026 1.4478 15 7 1.1770 -7.5788 0.7141 16 6 1.6091 -8.7698 1.1407 17 8 1.1370 -9.3989 2.0639 18 6 2.7814 -9.2096 0.2876 19 6 2.5718 -8.4638 -1.0497 20 6 1.6571 -7.3027 -0.6557 21 1 0.8135 -7.2303 -1.3421 22 6 2.4183 -5.9758 -0.6092 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 2.8398 -3.5484 0.7836 27 1 2.0302 -5.3764 2.0345 28 1 0.5004 -4.4870 1.8570 29 1 0.2018 -6.9373 2.4743 30 1 -0.6110 -6.4782 0.9519 31 1 3.7228 -8.9104 0.7485 32 1 2.7583 -10.2884 0.1336 33 1 3.5205 -8.0918 -1.4363 34 1 2.0867 -9.1114 -1.7802 35 1 2.7024 -5.6811 -1.6195 36 1 3.3121 -6.0877 0.0045 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172146965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:22 Heat of formation + Delta-G solvation = -62.786249 kcal Electronic energy + Delta-G solvation = -17172.943092 eV Core-core repulsion = 14462.310697 eV Total energy + Delta-G solvation = -2710.632396 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79505 -38.92133 -37.12420 -35.14563 -34.13168 -32.18046 -30.25457 -28.65942 -26.57770 -24.36105 -23.79638 -22.12090 -21.87572 -20.31807 -18.55349 -17.58194 -16.98739 -16.69729 -16.56463 -15.92104 -15.56910 -15.47279 -14.92520 -14.52269 -14.23132 -13.98925 -13.79509 -13.54689 -13.32647 -13.07553 -12.77656 -12.70824 -12.47218 -12.18826 -12.08097 -11.90593 -11.67918 -11.54872 -11.17799 -10.82231 -10.65626 -9.71733 -9.07248 -8.22259 -6.33128 1.42106 1.43237 1.49713 1.54366 2.01296 2.40266 3.11538 3.32650 3.53769 3.60578 3.84097 3.95085 4.02118 4.10699 4.28017 4.35470 4.40002 4.55837 4.65277 4.71726 4.85442 4.86506 4.96492 5.07964 5.16972 5.18868 5.21659 5.27802 5.40582 5.58558 5.63490 6.03564 6.21523 6.45764 6.73351 6.90375 7.12296 7.38148 8.89000 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.053015 B = 0.004783 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.021829 B = 5852.279114 C = 6105.519722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.210 3.790 10 N -0.680 5.680 11 C 0.085 3.915 12 H 0.055 0.945 13 C -0.152 4.152 14 C 0.136 3.864 15 N -0.621 5.621 16 C 0.509 3.491 17 O -0.590 6.590 18 C -0.144 4.144 19 C -0.112 4.112 20 C 0.126 3.874 21 H 0.089 0.911 22 C -0.101 4.101 23 H 0.264 0.736 24 H -0.002 1.002 25 H -0.037 1.037 26 H 0.334 0.666 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 -15.880 -2.707 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.083 3.917 10 N -0.309 5.309 11 C -0.026 4.026 12 H 0.074 0.926 13 C -0.192 4.192 14 C 0.013 3.987 15 N -0.354 5.354 16 C 0.299 3.701 17 O -0.471 6.471 18 C -0.184 4.184 19 C -0.150 4.150 20 C 0.023 3.977 21 H 0.107 0.893 22 C -0.140 4.140 23 H 0.073 0.927 24 H 0.016 0.984 25 H -0.020 1.020 26 H 0.151 0.849 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.633 -16.012 -2.872 17.215 hybrid contribution -0.659 1.277 1.248 1.903 sum 4.974 -14.735 -1.623 15.636 Atomic orbital electron populations 1.70083 1.07798 1.27941 1.51637 1.25921 0.95727 1.03310 0.94641 0.85363 0.78536 0.78129 0.78453 1.19823 1.20916 1.18749 1.21574 0.93834 0.91545 1.50436 0.91751 1.19195 0.90624 0.88802 0.93122 1.60680 1.20027 1.01231 1.48978 1.21600 0.96726 0.90100 0.94146 0.92619 1.22593 1.00814 0.96685 0.99089 1.21602 0.93408 0.86773 0.96875 1.48846 1.51482 1.17516 1.17588 1.21589 0.84518 0.80408 0.83588 1.90672 1.63173 1.59045 1.34227 1.22431 0.96533 1.03541 0.95907 1.22288 1.01413 0.94952 0.96322 1.21967 0.97882 0.95763 0.82066 0.89301 1.21887 0.97785 0.91806 1.02476 0.92685 0.98361 1.01977 0.84922 0.91487 0.92526 0.90321 0.90690 0.86467 0.86836 0.86776 0.87820 0.89359 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.54 -29.95 9.32 25.60 0.24 -29.71 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.21 10.91 5.23 85.56 0.45 11.36 16 10 N -0.68 -27.40 6.22 -495.47 -3.08 -30.48 16 11 C 0.08 2.70 2.37 44.94 0.11 2.81 16 12 H 0.06 1.95 7.79 -2.39 -0.02 1.93 16 13 C -0.15 -4.57 5.30 30.78 0.16 -4.40 16 14 C 0.14 3.66 6.96 86.46 0.60 4.26 16 15 N -0.62 -15.26 2.94 -791.67 -2.33 -17.59 16 16 C 0.51 13.28 8.01 88.08 0.71 13.99 16 17 O -0.59 -20.78 17.86 -3.03 -0.05 -20.83 16 18 C -0.14 -2.20 6.92 30.63 0.21 -1.99 16 19 C -0.11 -1.32 6.70 31.11 0.21 -1.11 16 20 C 0.13 2.40 3.55 44.75 0.16 2.56 16 21 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 22 C -0.10 -2.32 4.95 30.69 0.15 -2.17 16 23 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 24 H 0.00 -0.10 8.05 -2.39 -0.02 -0.12 16 25 H -0.04 -2.09 7.29 -2.39 -0.02 -2.11 16 26 H 0.33 12.97 8.48 -89.69 -0.76 12.20 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.95 7.30 -2.38 -0.02 1.93 16 29 H 0.08 2.19 8.03 -2.38 -0.02 2.17 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.11 0.95 7.81 -2.39 -0.02 0.93 16 34 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -69.56 291.94 0.60 -68.95 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.30 Total: 13.67 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 3.46 Total: -3.83 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -5.12 Total: -103.67 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -69.56 0.60 -68.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172146965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.169 kcal (2) G-P(sol) polarization free energy of solvation -69.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds