Wall clock time and date at job start Sun Mar 29 2020 21:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48498 * 109.47354 * 270.00127 * 3 2 1 5 5 H 1.48502 * 109.47210 * 30.00604 * 3 2 1 6 6 H 1.48503 * 109.47082 * 150.00295 * 3 2 1 7 7 C 1.37875 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00562 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00019 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99564 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.17925 * 324.36108 * 11 10 9 13 13 C 1.52814 * 109.37892 * 83.61168 * 11 10 9 14 14 C 1.53743 * 110.06978 * 181.69310 * 13 11 10 15 15 N 1.47576 * 106.53133 * 307.30885 * 14 13 11 16 16 C 1.34985 * 127.90449 * 238.36416 * 15 14 13 17 17 O 1.21278 * 125.00859 * 340.57560 * 16 15 14 18 18 C 1.51458 * 109.67762 * 160.88350 * 16 15 14 19 19 C 1.54526 * 104.22749 * 22.87992 * 18 16 15 20 20 C 1.47482 * 121.27163 * 54.04137 * 15 14 13 21 21 H 1.09002 * 110.30357 * 64.57462 * 20 15 14 22 22 C 1.53045 * 107.27066 * 304.45400 * 20 15 14 23 23 H 0.96999 * 119.99623 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46961 * 59.99886 * 9 7 2 25 25 H 1.08990 * 109.46647 * 299.99851 * 9 7 2 26 26 H 1.00897 * 110.99817 * 303.95315 * 10 9 7 27 27 H 1.08997 * 109.23258 * 61.56022 * 13 11 10 28 28 H 1.08993 * 109.39519 * 301.92656 * 13 11 10 29 29 H 1.09008 * 110.03636 * 188.05933 * 14 13 11 30 30 H 1.08996 * 110.03980 * 66.56572 * 14 13 11 31 31 H 1.09002 * 110.48097 * 264.19259 * 18 16 15 32 32 H 1.09005 * 110.48030 * 141.57364 * 18 16 15 33 33 H 1.08998 * 110.70355 * 220.97327 * 19 18 16 34 34 H 1.09000 * 110.85157 * 97.81391 * 19 18 16 35 35 H 1.09002 * 109.63249 * 174.24104 * 22 20 15 36 36 H 1.08995 * 109.62973 * 294.63230 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5792 -0.0010 11 6 5.4697 -2.6183 -0.0022 12 1 5.8494 -1.7918 -0.6026 13 6 5.9820 -2.4709 1.4300 14 6 7.5193 -2.4674 1.4426 15 7 7.9481 -3.6732 0.7077 16 6 8.7183 -4.6873 1.1555 17 8 9.4567 -4.6285 2.1158 18 6 8.5249 -5.9028 0.2729 19 6 8.0126 -5.3232 -1.0648 20 6 7.4682 -3.9474 -0.6597 21 1 7.8274 -3.1817 -1.3473 22 6 5.9384 -3.9431 -0.6137 23 1 -0.4849 0.8401 0.0004 24 1 3.8753 -0.6805 0.8888 25 1 3.8745 -0.6802 -0.8911 26 1 3.6260 -3.0952 0.7806 27 1 5.6169 -3.3048 2.0295 28 1 5.6143 -1.5354 1.8514 29 1 7.8845 -2.5061 2.4690 30 1 7.8949 -1.5734 0.9449 31 1 7.7839 -6.5747 0.7061 32 1 9.4720 -6.4220 0.1259 33 1 7.2182 -5.9462 -1.4757 34 1 8.8282 -5.2194 -1.7804 35 1 5.5414 -4.0408 -1.6241 36 1 5.5882 -4.7736 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172146966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:25 Heat of formation + Delta-G solvation = -37.696616 kcal Electronic energy + Delta-G solvation = -17232.567827 eV Core-core repulsion = 14523.023399 eV Total energy + Delta-G solvation = -2709.544428 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74522 -37.75094 -35.89733 -33.64915 -32.54567 -30.91673 -29.35038 -27.40187 -25.36495 -23.33004 -21.77500 -20.98926 -20.74700 -19.28953 -16.92130 -16.50528 -15.99976 -15.72302 -14.80130 -14.74966 -14.28218 -13.89942 -13.83884 -13.43041 -13.04770 -12.84292 -12.62926 -12.53074 -12.08551 -11.90824 -11.59029 -11.33018 -11.05506 -10.92397 -10.73161 -10.58401 -10.27930 -9.90258 -9.78429 -9.34659 -8.68592 -8.62958 -7.54776 -6.10581 -4.08970 2.46475 2.93533 3.24563 3.32273 3.33100 4.19548 4.32956 4.37122 4.56548 4.77347 4.86481 4.95458 5.11211 5.19704 5.22490 5.27203 5.44384 5.49019 5.51246 5.63497 5.67921 5.74961 5.90799 5.97668 6.04153 6.24964 6.37831 6.55182 6.71250 6.97008 7.13184 7.54151 7.82619 8.09493 8.24570 8.59072 8.97293 9.51082 11.02723 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046289 B = 0.005267 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.756023 B = 5315.061741 C = 5587.567551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.674 5.674 11 C 0.085 3.915 12 H 0.070 0.930 13 C -0.167 4.167 14 C 0.135 3.865 15 N -0.622 5.622 16 C 0.521 3.479 17 O -0.538 6.538 18 C -0.152 4.152 19 C -0.125 4.125 20 C 0.126 3.874 21 H 0.083 0.917 22 C -0.114 4.114 23 H 0.264 0.736 24 H -0.015 1.015 25 H 0.021 0.979 26 H 0.336 0.664 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.209 -8.592 -1.724 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.303 5.303 11 C -0.026 4.026 12 H 0.089 0.911 13 C -0.207 4.207 14 C 0.014 3.986 15 N -0.357 5.357 16 C 0.309 3.691 17 O -0.415 6.415 18 C -0.193 4.193 19 C -0.162 4.162 20 C 0.021 3.979 21 H 0.101 0.899 22 C -0.153 4.153 23 H 0.074 0.926 24 H 0.002 0.998 25 H 0.039 0.961 26 H 0.154 0.846 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.369 -8.403 -1.847 18.492 hybrid contribution 0.382 1.341 0.919 1.670 sum 16.751 -7.062 -0.929 18.203 Atomic orbital electron populations 1.69900 1.06179 1.26926 1.50829 1.24908 0.94743 0.98950 0.94688 0.86826 0.80218 0.83875 0.78591 1.20130 1.21192 1.19306 1.21057 0.88962 0.94805 1.50774 0.90326 1.20027 0.96625 0.85007 0.94677 1.60598 1.03572 1.16757 1.49354 1.21513 0.90483 0.97070 0.93555 0.91134 1.22811 0.94814 1.03099 0.99986 1.21743 0.94326 0.85821 0.96746 1.49003 1.49266 1.21462 1.16007 1.21115 0.78669 0.85018 0.84312 1.90696 1.37522 1.83451 1.29860 1.22344 1.04072 0.96875 0.95978 1.22320 1.01878 0.95408 0.96634 1.21796 0.95241 0.97374 0.83449 0.89895 1.22005 0.92353 0.98289 1.02628 0.92604 0.99774 0.96073 0.84607 0.91519 0.90442 0.89771 0.91095 0.87746 0.88373 0.88886 0.89952 0.89833 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.53 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.49 9.87 -34.44 -0.34 -14.83 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 C 0.16 3.82 4.30 -4.97 -0.02 3.80 16 10 N -0.67 -12.96 6.22 -107.95 -0.67 -13.63 16 11 C 0.09 1.27 2.36 -67.68 -0.16 1.11 16 12 H 0.07 1.10 7.79 -51.93 -0.40 0.69 16 13 C -0.17 -2.31 5.30 -26.44 -0.14 -2.45 16 14 C 0.14 1.69 7.00 -3.07 -0.02 1.67 16 15 N -0.62 -7.63 2.99 -163.41 -0.49 -8.12 16 16 C 0.52 6.88 8.08 -10.52 -0.09 6.79 16 17 O -0.54 -9.24 17.86 5.56 0.10 -9.14 16 18 C -0.15 -1.35 6.91 -26.71 -0.18 -1.53 16 19 C -0.12 -0.93 6.71 -25.72 -0.17 -1.11 16 20 C 0.13 1.27 3.55 -67.16 -0.24 1.03 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 22 C -0.11 -1.36 4.95 -26.57 -0.13 -1.49 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H -0.02 -0.36 6.36 -51.93 -0.33 -0.69 16 25 H 0.02 0.50 7.48 -51.93 -0.39 0.11 16 26 H 0.34 6.40 8.49 -39.29 -0.33 6.06 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.16 7.30 -51.93 -0.38 0.78 16 29 H 0.08 1.08 8.02 -51.92 -0.42 0.66 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.59 7.82 -51.93 -0.41 0.18 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 288.50 15.07 4.35 4.35 Total: -1.00 -32.33 288.50 -7.83 -40.16 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.63 Total: 1.54 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -1.59 Total: -5.12 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.39 Total: -48.31 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.10 Total: -9.14 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.33 -7.83 -40.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172146966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.462 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds