Wall clock time and date at job start Sun Mar 29 2020 21:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48498 * 109.47354 * 270.00127 * 3 2 1 5 5 H 1.48502 * 109.47210 * 30.00604 * 3 2 1 6 6 H 1.48503 * 109.47082 * 150.00295 * 3 2 1 7 7 C 1.37875 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00562 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00019 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99564 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.17925 * 324.36108 * 11 10 9 13 13 C 1.52814 * 109.37892 * 83.61168 * 11 10 9 14 14 C 1.53743 * 110.06978 * 181.69310 * 13 11 10 15 15 N 1.47576 * 106.53133 * 307.30885 * 14 13 11 16 16 C 1.34985 * 127.90449 * 238.36416 * 15 14 13 17 17 O 1.21278 * 125.00859 * 340.57560 * 16 15 14 18 18 C 1.51458 * 109.67762 * 160.88350 * 16 15 14 19 19 C 1.54526 * 104.22749 * 22.87992 * 18 16 15 20 20 C 1.47482 * 121.27163 * 54.04137 * 15 14 13 21 21 H 1.09002 * 110.30357 * 64.57462 * 20 15 14 22 22 C 1.53045 * 107.27066 * 304.45400 * 20 15 14 23 23 H 0.96999 * 119.99623 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46961 * 59.99886 * 9 7 2 25 25 H 1.08990 * 109.46647 * 299.99851 * 9 7 2 26 26 H 1.00897 * 110.99817 * 303.95315 * 10 9 7 27 27 H 1.08997 * 109.23258 * 61.56022 * 13 11 10 28 28 H 1.08993 * 109.39519 * 301.92656 * 13 11 10 29 29 H 1.09008 * 110.03636 * 188.05933 * 14 13 11 30 30 H 1.08996 * 110.03980 * 66.56572 * 14 13 11 31 31 H 1.09002 * 110.48097 * 264.19259 * 18 16 15 32 32 H 1.09005 * 110.48030 * 141.57364 * 18 16 15 33 33 H 1.08998 * 110.70355 * 220.97327 * 19 18 16 34 34 H 1.09000 * 110.85157 * 97.81391 * 19 18 16 35 35 H 1.09002 * 109.63249 * 174.24104 * 22 20 15 36 36 H 1.08995 * 109.62973 * 294.63230 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5792 -0.0010 11 6 5.4697 -2.6183 -0.0022 12 1 5.8494 -1.7918 -0.6026 13 6 5.9820 -2.4709 1.4300 14 6 7.5193 -2.4674 1.4426 15 7 7.9481 -3.6732 0.7077 16 6 8.7183 -4.6873 1.1555 17 8 9.4567 -4.6285 2.1158 18 6 8.5249 -5.9028 0.2729 19 6 8.0126 -5.3232 -1.0648 20 6 7.4682 -3.9474 -0.6597 21 1 7.8274 -3.1817 -1.3473 22 6 5.9384 -3.9431 -0.6137 23 1 -0.4849 0.8401 0.0004 24 1 3.8753 -0.6805 0.8888 25 1 3.8745 -0.6802 -0.8911 26 1 3.6260 -3.0952 0.7806 27 1 5.6169 -3.3048 2.0295 28 1 5.6143 -1.5354 1.8514 29 1 7.8845 -2.5061 2.4690 30 1 7.8949 -1.5734 0.9449 31 1 7.7839 -6.5747 0.7061 32 1 9.4720 -6.4220 0.1259 33 1 7.2182 -5.9462 -1.4757 34 1 8.8282 -5.2194 -1.7804 35 1 5.5414 -4.0408 -1.6241 36 1 5.5882 -4.7736 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172146966.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:24 Heat of formation + Delta-G solvation = -61.241516 kcal Electronic energy + Delta-G solvation = -17233.588810 eV Core-core repulsion = 14523.023399 eV Total energy + Delta-G solvation = -2710.565411 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.69311 -38.94239 -37.14295 -35.09424 -34.15278 -32.31685 -30.28963 -29.00051 -26.57403 -24.34789 -23.39574 -22.11295 -21.89001 -20.29633 -18.93419 -17.59200 -17.00188 -16.66825 -16.44246 -15.93015 -15.67445 -15.37262 -14.93557 -14.68473 -14.40343 -14.09358 -13.94111 -13.60062 -13.34017 -13.13659 -12.78614 -12.65088 -12.41217 -12.18817 -11.97590 -11.83227 -11.65800 -11.56428 -11.30744 -10.84508 -10.80496 -9.68068 -9.10706 -8.30443 -6.34846 1.34918 1.36150 1.46597 1.48068 2.01755 2.33328 3.04057 3.29396 3.50793 3.58806 3.83312 3.95437 4.01898 4.10668 4.29046 4.34849 4.39916 4.54981 4.66548 4.71240 4.79504 4.83698 4.86437 4.96912 5.09881 5.18053 5.18546 5.20533 5.37622 5.52668 5.61381 5.97056 6.19470 6.54734 6.66198 6.76955 7.10774 7.30393 8.86372 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.046289 B = 0.005267 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.756023 B = 5315.061741 C = 5587.567551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.528 4.528 8 H 0.037 0.963 9 C 0.176 3.824 10 N -0.681 5.681 11 C 0.083 3.917 12 H 0.069 0.931 13 C -0.157 4.157 14 C 0.137 3.863 15 N -0.625 5.625 16 C 0.509 3.491 17 O -0.587 6.587 18 C -0.145 4.145 19 C -0.113 4.113 20 C 0.127 3.873 21 H 0.095 0.905 22 C -0.105 4.105 23 H 0.267 0.733 24 H -0.013 1.013 25 H 0.024 0.976 26 H 0.335 0.665 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.313 -8.664 -2.861 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.566 4.566 8 H 0.055 0.945 9 C 0.048 3.952 10 N -0.309 5.309 11 C -0.027 4.027 12 H 0.087 0.913 13 C -0.197 4.197 14 C 0.015 3.985 15 N -0.359 5.359 16 C 0.299 3.701 17 O -0.468 6.468 18 C -0.184 4.184 19 C -0.151 4.151 20 C 0.023 3.977 21 H 0.113 0.887 22 C -0.144 4.144 23 H 0.076 0.924 24 H 0.005 0.995 25 H 0.042 0.958 26 H 0.152 0.848 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.483 -8.498 -3.012 20.565 hybrid contribution -0.335 1.288 1.279 1.846 sum 18.148 -7.210 -1.732 19.605 Atomic orbital electron populations 1.70058 1.08231 1.28196 1.52406 1.25878 0.95594 1.03294 0.94186 0.85674 0.79312 0.78410 0.79273 1.18958 1.20913 1.17340 1.21372 0.91604 0.93348 1.50325 0.94499 1.19754 0.93432 0.87404 0.94648 1.60528 1.06504 1.14390 1.49515 1.21651 0.87626 0.99012 0.94411 0.91256 1.22662 0.95818 1.02229 0.99032 1.21669 0.93108 0.86803 0.96906 1.49166 1.48813 1.21128 1.16824 1.21936 0.77785 0.86281 0.84055 1.90666 1.39619 1.84362 1.32138 1.22390 1.05364 0.95044 0.95641 1.22371 1.03016 0.93508 0.96182 1.21961 0.93632 0.99655 0.82437 0.88741 1.21928 0.93841 0.96204 1.02445 0.92395 0.99536 0.95778 0.84779 0.92019 0.91676 0.90439 0.89850 0.86637 0.86783 0.87046 0.87780 0.89379 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.95 43.31 27.47 68.60 1.88 45.19 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 7 C -0.53 -30.10 9.87 25.60 0.25 -29.84 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 9 C 0.18 8.06 4.30 85.56 0.37 8.43 16 10 N -0.68 -25.77 6.22 -495.46 -3.08 -28.85 16 11 C 0.08 2.36 2.36 44.94 0.11 2.46 16 12 H 0.07 2.00 7.79 -2.39 -0.02 1.98 16 13 C -0.16 -4.19 5.30 30.78 0.16 -4.02 16 14 C 0.14 3.25 7.00 86.42 0.60 3.86 16 15 N -0.63 -14.05 2.99 -789.17 -2.36 -16.41 16 16 C 0.51 12.59 8.08 87.87 0.71 13.30 16 17 O -0.59 -19.90 17.86 -3.02 -0.05 -19.95 16 18 C -0.14 -2.09 6.91 30.61 0.21 -1.88 16 19 C -0.11 -1.22 6.71 31.25 0.21 -1.01 16 20 C 0.13 2.15 3.55 44.96 0.16 2.31 16 21 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 22 C -0.11 -2.25 4.95 30.70 0.15 -2.10 16 23 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 24 H -0.01 -0.59 6.36 -2.39 -0.02 -0.60 16 25 H 0.02 1.10 7.48 -2.39 -0.02 1.08 16 26 H 0.33 12.79 8.49 -89.70 -0.76 12.02 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.89 7.30 -2.39 -0.02 1.87 16 29 H 0.08 1.95 8.02 -2.38 -0.02 1.93 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.11 0.87 7.82 -2.39 -0.02 0.85 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.58 288.50 0.34 -71.24 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.25 Total: 14.97 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 3.40 Total: -7.57 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -5.14 Total: -103.88 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -71.58 0.34 -71.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172146966.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.999 kcal (2) G-P(sol) polarization free energy of solvation -71.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds