Wall clock time and date at job start Sun Mar 29 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00081 * 2 1 4 4 H 1.48494 * 109.47105 * 269.99711 * 3 2 1 5 5 H 1.48498 * 109.47224 * 29.99670 * 3 2 1 6 6 H 1.48504 * 109.46936 * 149.99828 * 3 2 1 7 7 C 1.37877 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99824 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99987 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99755 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.18578 * 325.62594 * 11 10 9 13 13 C 1.52833 * 109.22266 * 85.00403 * 11 10 9 14 14 C 1.53735 * 109.88452 * 58.84600 * 13 11 10 15 15 N 1.47384 * 106.64973 * 52.82936 * 14 13 11 16 16 C 1.33675 * 127.74895 * 124.97438 * 15 14 13 17 17 O 1.21282 * 125.39510 * 19.45890 * 16 15 14 18 18 C 1.51506 * 109.21363 * 199.42487 * 16 15 14 19 19 C 1.54554 * 104.00659 * 334.85595 * 18 16 15 20 20 C 1.47714 * 121.15544 * 305.90912 * 15 14 13 21 21 H 1.09005 * 110.30664 * 295.49473 * 20 15 14 22 22 C 1.53033 * 107.21570 * 55.59283 * 20 15 14 23 23 H 0.97000 * 119.99418 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47066 * 60.00543 * 9 7 2 25 25 H 1.08999 * 109.47090 * 300.00132 * 9 7 2 26 26 H 1.00900 * 111.00445 * 303.95257 * 10 9 7 27 27 H 1.09001 * 109.39893 * 298.71906 * 13 11 10 28 28 H 1.08996 * 109.33389 * 178.93484 * 13 11 10 29 29 H 1.09005 * 110.01274 * 293.54687 * 14 13 11 30 30 H 1.09000 * 110.09952 * 172.16462 * 14 13 11 31 31 H 1.08997 * 110.52292 * 93.48834 * 18 16 15 32 32 H 1.09001 * 110.52137 * 216.22871 * 18 16 15 33 33 H 1.09004 * 110.70234 * 139.36009 * 19 18 16 34 34 H 1.09001 * 110.70725 * 262.59044 * 19 18 16 35 35 H 1.08998 * 109.62247 * 185.66516 * 22 20 15 36 36 H 1.09005 * 109.62806 * 65.09724 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0022 12 1 5.8509 -1.7782 -0.5785 13 6 5.9748 -2.5066 1.4403 14 6 5.4091 -3.6603 2.2843 15 7 5.7332 -4.9065 1.5672 16 6 6.3903 -5.9725 2.0348 17 8 6.5463 -6.2432 3.2067 18 6 6.9085 -6.7897 0.8690 19 6 5.9502 -6.4361 -0.2909 20 6 5.3484 -5.0971 0.1539 21 1 4.2629 -5.1090 0.0556 22 6 5.9399 -3.9288 -0.6381 23 1 -0.4849 0.8401 0.0004 24 1 3.8745 -0.6801 0.8912 25 1 3.8752 -0.6804 -0.8888 26 1 3.6254 -3.0956 0.7821 27 1 5.6525 -1.5557 1.8644 28 1 7.0637 -2.5545 1.4450 29 1 4.3284 -3.5562 2.3818 30 1 5.8734 -3.6657 3.2704 31 1 7.9298 -6.4993 0.6229 32 1 6.8571 -7.8546 1.0960 33 1 6.5013 -6.3200 -1.2242 34 1 5.1727 -7.1932 -0.3929 35 1 5.5958 -3.9755 -1.6713 36 1 7.0283 -3.9805 -0.6090 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172146983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:27 Heat of formation + Delta-G solvation = -32.729090 kcal Electronic energy + Delta-G solvation = -17535.797072 eV Core-core repulsion = 14826.468053 eV Total energy + Delta-G solvation = -2709.329019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81680 -37.82982 -35.75256 -33.40529 -32.48980 -30.88844 -29.29036 -27.11625 -25.83838 -23.45985 -21.66979 -21.50591 -20.28388 -18.65099 -16.90639 -16.40132 -15.88284 -15.65515 -15.18599 -14.67149 -14.25956 -13.87460 -13.82192 -13.26645 -13.07496 -12.75466 -12.51663 -12.45639 -12.02807 -11.90947 -11.50216 -11.23065 -10.98063 -10.82089 -10.77795 -10.55642 -10.32471 -9.84228 -9.69682 -9.34026 -8.63968 -8.51562 -7.56307 -6.10586 -4.09011 2.58652 3.06761 3.24595 3.32389 3.33155 4.31634 4.37117 4.47174 4.71553 4.83630 4.90920 5.01989 5.13993 5.21676 5.27390 5.34850 5.43240 5.57731 5.59042 5.72984 5.75065 5.82591 6.01012 6.03961 6.15673 6.19082 6.32659 6.63058 6.72569 6.97218 7.27745 7.54151 7.81959 8.22089 8.23343 8.58722 8.96974 9.51116 11.02668 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041626 B = 0.005814 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.499179 B = 4814.582537 C = 4886.174121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.078 0.922 9 C 0.164 3.836 10 N -0.675 5.675 11 C 0.081 3.919 12 H 0.075 0.925 13 C -0.164 4.164 14 C 0.128 3.872 15 N -0.617 5.617 16 C 0.520 3.480 17 O -0.542 6.542 18 C -0.154 4.154 19 C -0.126 4.126 20 C 0.127 3.873 21 H 0.097 0.903 22 C -0.111 4.111 23 H 0.264 0.736 24 H -0.015 1.015 25 H 0.022 0.978 26 H 0.335 0.665 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.385 -9.368 -1.111 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.096 0.904 9 C 0.036 3.964 10 N -0.306 5.306 11 C -0.030 4.030 12 H 0.093 0.907 13 C -0.204 4.204 14 C 0.006 3.994 15 N -0.351 5.351 16 C 0.308 3.692 17 O -0.420 6.420 18 C -0.194 4.194 19 C -0.163 4.163 20 C 0.024 3.976 21 H 0.115 0.885 22 C -0.150 4.150 23 H 0.074 0.926 24 H 0.002 0.998 25 H 0.040 0.960 26 H 0.154 0.846 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.217 -9.379 -1.110 17.069 hybrid contribution 0.502 1.411 0.866 1.730 sum 14.720 -7.968 -0.244 16.740 Atomic orbital electron populations 1.69901 1.06181 1.26919 1.50799 1.24909 0.94734 0.98948 0.94688 0.86825 0.80210 0.83891 0.78566 1.20160 1.21226 1.19310 1.21044 0.88957 0.94760 1.50809 0.90382 1.20029 0.96610 0.85040 0.94713 1.60673 1.03694 1.16782 1.49494 1.21542 0.90732 0.97286 0.93483 0.90693 1.22642 1.01083 0.98485 0.98220 1.21741 1.00856 0.81458 0.95298 1.48641 1.56731 1.16315 1.13409 1.20712 0.77412 0.81555 0.89516 1.90701 1.60142 1.72254 1.18899 1.22382 1.00878 1.01511 0.94627 1.22337 0.99077 0.96550 0.98380 1.21853 1.00850 0.94691 0.80185 0.88487 1.21971 0.99218 0.93811 0.99951 0.92612 0.99785 0.96023 0.84588 0.90490 0.91708 0.90569 0.89705 0.88103 0.88551 0.89246 0.89884 0.89959 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.35 9.87 -34.44 -0.34 -14.69 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 9 C 0.16 3.76 4.29 -4.98 -0.02 3.74 16 10 N -0.67 -12.68 5.67 -107.95 -0.61 -13.29 16 11 C 0.08 1.20 2.80 -67.67 -0.19 1.01 16 12 H 0.07 1.15 7.77 -51.93 -0.40 0.75 16 13 C -0.16 -2.26 5.65 -26.43 -0.15 -2.41 16 14 C 0.13 1.80 6.47 -3.18 -0.02 1.78 16 15 N -0.62 -8.30 2.94 -163.76 -0.48 -8.78 16 16 C 0.52 7.38 8.01 -11.08 -0.09 7.29 16 17 O -0.54 -9.83 17.86 5.56 0.10 -9.73 16 18 C -0.15 -1.48 6.92 -26.67 -0.18 -1.66 16 19 C -0.13 -1.09 6.71 -25.71 -0.17 -1.26 16 20 C 0.13 1.50 3.15 -67.04 -0.21 1.28 16 21 H 0.10 1.29 7.45 -51.93 -0.39 0.90 16 22 C -0.11 -1.31 5.07 -26.59 -0.13 -1.45 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H -0.02 -0.36 6.49 -51.93 -0.34 -0.69 16 25 H 0.02 0.51 7.48 -51.93 -0.39 0.12 16 26 H 0.33 6.26 5.74 -39.29 -0.23 6.04 16 27 H 0.08 1.13 7.46 -51.93 -0.39 0.74 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.14 6.60 -51.93 -0.34 0.80 16 30 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.62 7.81 -51.93 -0.41 0.21 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 283.11 15.07 4.27 4.27 Total: -1.00 -31.91 283.11 -7.65 -39.57 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.42 Total: 2.48 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.61 Total: -4.50 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.32 Total: -48.54 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.10 Total: -9.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.91 -7.65 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172146983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.836 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds