Wall clock time and date at job start Sun Mar 29 2020 21:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00081 * 2 1 4 4 H 1.48494 * 109.47105 * 269.99711 * 3 2 1 5 5 H 1.48498 * 109.47224 * 29.99670 * 3 2 1 6 6 H 1.48504 * 109.46936 * 149.99828 * 3 2 1 7 7 C 1.37877 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99824 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99987 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99755 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.18578 * 325.62594 * 11 10 9 13 13 C 1.52833 * 109.22266 * 85.00403 * 11 10 9 14 14 C 1.53735 * 109.88452 * 58.84600 * 13 11 10 15 15 N 1.47384 * 106.64973 * 52.82936 * 14 13 11 16 16 C 1.33675 * 127.74895 * 124.97438 * 15 14 13 17 17 O 1.21282 * 125.39510 * 19.45890 * 16 15 14 18 18 C 1.51506 * 109.21363 * 199.42487 * 16 15 14 19 19 C 1.54554 * 104.00659 * 334.85595 * 18 16 15 20 20 C 1.47714 * 121.15544 * 305.90912 * 15 14 13 21 21 H 1.09005 * 110.30664 * 295.49473 * 20 15 14 22 22 C 1.53033 * 107.21570 * 55.59283 * 20 15 14 23 23 H 0.97000 * 119.99418 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47066 * 60.00543 * 9 7 2 25 25 H 1.08999 * 109.47090 * 300.00132 * 9 7 2 26 26 H 1.00900 * 111.00445 * 303.95257 * 10 9 7 27 27 H 1.09001 * 109.39893 * 298.71906 * 13 11 10 28 28 H 1.08996 * 109.33389 * 178.93484 * 13 11 10 29 29 H 1.09005 * 110.01274 * 293.54687 * 14 13 11 30 30 H 1.09000 * 110.09952 * 172.16462 * 14 13 11 31 31 H 1.08997 * 110.52292 * 93.48834 * 18 16 15 32 32 H 1.09001 * 110.52137 * 216.22871 * 18 16 15 33 33 H 1.09004 * 110.70234 * 139.36009 * 19 18 16 34 34 H 1.09001 * 110.70725 * 262.59044 * 19 18 16 35 35 H 1.08998 * 109.62247 * 185.66516 * 22 20 15 36 36 H 1.09005 * 109.62806 * 65.09724 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0022 12 1 5.8509 -1.7782 -0.5785 13 6 5.9748 -2.5066 1.4403 14 6 5.4091 -3.6603 2.2843 15 7 5.7332 -4.9065 1.5672 16 6 6.3903 -5.9725 2.0348 17 8 6.5463 -6.2432 3.2067 18 6 6.9085 -6.7897 0.8690 19 6 5.9502 -6.4361 -0.2909 20 6 5.3484 -5.0971 0.1539 21 1 4.2629 -5.1090 0.0556 22 6 5.9399 -3.9288 -0.6381 23 1 -0.4849 0.8401 0.0004 24 1 3.8745 -0.6801 0.8912 25 1 3.8752 -0.6804 -0.8888 26 1 3.6254 -3.0956 0.7821 27 1 5.6525 -1.5557 1.8644 28 1 7.0637 -2.5545 1.4450 29 1 4.3284 -3.5562 2.3818 30 1 5.8734 -3.6657 3.2704 31 1 7.9298 -6.4993 0.6229 32 1 6.8571 -7.8546 1.0960 33 1 6.5013 -6.3200 -1.2242 34 1 5.1727 -7.1932 -0.3929 35 1 5.5958 -3.9755 -1.6713 36 1 7.0283 -3.9805 -0.6090 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172146983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:26 Heat of formation + Delta-G solvation = -55.649189 kcal Electronic energy + Delta-G solvation = -17536.790962 eV Core-core repulsion = 14826.468053 eV Total energy + Delta-G solvation = -2710.322910 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.85875 -39.06853 -36.99613 -35.05420 -33.96092 -32.37305 -30.26323 -28.72669 -27.11836 -24.49141 -23.39612 -22.58931 -21.40571 -19.83368 -18.86469 -17.56229 -17.04571 -16.73383 -16.58791 -16.07317 -15.61591 -15.31780 -14.94863 -14.65295 -14.40496 -14.12737 -13.98642 -13.53931 -13.33675 -13.01182 -12.75245 -12.56554 -12.43529 -12.16890 -11.95261 -11.80831 -11.64554 -11.61520 -11.27539 -10.81675 -10.78292 -9.62230 -9.10108 -8.29953 -6.34178 1.35127 1.36464 1.46919 1.51775 2.03754 2.33693 3.04775 3.41120 3.48726 3.61161 3.86442 3.97264 4.03674 4.06144 4.23182 4.28018 4.51476 4.59485 4.65216 4.78350 4.84476 4.87134 4.91201 4.97972 5.12382 5.13432 5.19577 5.20533 5.38004 5.53733 5.61791 5.97385 6.24731 6.54772 6.67147 6.77492 7.14310 7.31051 8.86869 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041626 B = 0.005814 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.499179 B = 4814.582537 C = 4886.174121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.526 4.526 8 H 0.035 0.965 9 C 0.175 3.825 10 N -0.679 5.679 11 C 0.076 3.924 12 H 0.076 0.924 13 C -0.154 4.154 14 C 0.126 3.874 15 N -0.618 5.618 16 C 0.508 3.492 17 O -0.592 6.592 18 C -0.141 4.141 19 C -0.114 4.114 20 C 0.124 3.876 21 H 0.075 0.925 22 C -0.102 4.102 23 H 0.267 0.733 24 H -0.014 1.014 25 H 0.026 0.974 26 H 0.332 0.668 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.174 -9.407 -2.384 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.565 4.565 8 H 0.053 0.947 9 C 0.047 3.953 10 N -0.311 5.311 11 C -0.034 4.034 12 H 0.094 0.906 13 C -0.194 4.194 14 C 0.004 3.996 15 N -0.351 5.351 16 C 0.298 3.702 17 O -0.473 6.473 18 C -0.181 4.181 19 C -0.151 4.151 20 C 0.021 3.979 21 H 0.093 0.907 22 C -0.140 4.140 23 H 0.075 0.925 24 H 0.004 0.996 25 H 0.044 0.956 26 H 0.151 0.849 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.026 -9.436 -2.414 19.615 hybrid contribution -0.436 1.341 1.280 1.904 sum 16.590 -8.095 -1.135 18.495 Atomic orbital electron populations 1.70063 1.08258 1.28152 1.52487 1.25886 0.95585 1.03323 0.94230 0.85660 0.79296 0.78375 0.79236 1.18977 1.21053 1.17293 1.21361 0.91655 0.93229 1.50217 0.94667 1.19763 0.93355 0.87536 0.94688 1.60595 1.06616 1.14251 1.49598 1.21725 0.87904 0.99355 0.94441 0.90581 1.22520 1.02139 0.97513 0.97178 1.21643 0.99787 0.82545 0.95655 1.48789 1.56314 1.15881 1.14133 1.21617 0.76773 0.81819 0.90007 1.90671 1.61934 1.73431 1.21270 1.22416 1.01926 1.01383 0.92358 1.22374 0.99197 0.94482 0.99065 1.21963 0.99974 0.96797 0.79181 0.90671 1.21934 1.00695 0.91667 0.99709 0.92451 0.99603 0.95629 0.84891 0.91639 0.89664 0.92375 0.90049 0.85725 0.87235 0.86264 0.89022 0.89363 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 2 C 0.01 0.41 5.47 84.65 0.46 0.87 16 3 Si 0.95 43.34 27.47 68.60 1.88 45.22 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 7 C -0.53 -29.91 9.87 25.60 0.25 -29.65 16 8 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 9 C 0.18 7.95 4.29 85.56 0.37 8.32 16 10 N -0.68 -25.27 5.67 -495.43 -2.81 -28.08 16 11 C 0.08 2.10 2.80 44.94 0.13 2.23 16 12 H 0.08 2.12 7.77 -2.39 -0.02 2.10 16 13 C -0.15 -3.98 5.65 30.79 0.17 -3.80 16 14 C 0.13 3.52 6.47 86.46 0.56 4.08 16 15 N -0.62 -15.89 2.94 -791.01 -2.32 -18.22 16 16 C 0.51 13.69 8.01 88.09 0.71 14.40 16 17 O -0.59 -21.41 17.86 -3.04 -0.05 -21.47 16 18 C -0.14 -2.21 6.92 30.63 0.21 -2.00 16 19 C -0.11 -1.53 6.71 31.26 0.21 -1.32 16 20 C 0.12 2.63 3.15 44.90 0.14 2.77 16 21 H 0.08 1.95 7.45 -2.38 -0.02 1.93 16 22 C -0.10 -2.08 5.07 30.69 0.16 -1.93 16 23 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 24 H -0.01 -0.61 6.49 -2.39 -0.02 -0.63 16 25 H 0.03 1.15 7.48 -2.39 -0.02 1.14 16 26 H 0.33 12.70 5.74 -89.69 -0.51 12.19 16 27 H 0.06 1.85 7.46 -2.39 -0.02 1.83 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.81 6.60 -2.38 -0.02 1.80 16 30 H 0.08 2.31 8.03 -2.39 -0.02 2.29 16 31 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 0.98 7.81 -2.39 -0.02 0.97 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -71.53 283.11 0.86 -70.67 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.50 Total: 16.68 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 3.37 Total: -6.03 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -4.84 Total: -105.07 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -71.53 0.86 -70.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172146983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.017 kcal (2) G-P(sol) polarization free energy of solvation -71.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds