Wall clock time and date at job start Sun Mar 29 2020 21:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.21594 * 34.99893 * 11 10 9 13 13 C 1.52823 * 109.22170 * 275.61209 * 11 10 9 14 14 C 1.53738 * 109.89705 * 301.13074 * 13 11 10 15 15 N 1.47388 * 106.64548 * 307.19453 * 14 13 11 16 16 C 1.33682 * 127.75656 * 235.01141 * 15 14 13 17 17 O 1.21280 * 125.39480 * 340.64269 * 16 15 14 18 18 C 1.51506 * 109.21646 * 160.62376 * 16 15 14 19 19 C 1.54553 * 104.01276 * 25.11840 * 18 16 15 20 20 C 1.47715 * 121.15029 * 54.09520 * 15 14 13 21 21 H 1.08996 * 110.30646 * 65.08840 * 20 15 14 22 22 C 1.52954 * 107.18446 * 304.36948 * 20 15 14 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.00899 * 111.00283 * 303.95218 * 10 9 7 27 27 H 1.09000 * 109.40211 * 61.26153 * 13 11 10 28 28 H 1.09003 * 109.40427 * 181.00258 * 13 11 10 29 29 H 1.09000 * 110.01249 * 66.47586 * 14 13 11 30 30 H 1.09001 * 110.01793 * 187.81282 * 14 13 11 31 31 H 1.08992 * 110.52020 * 143.75252 * 18 16 15 32 32 H 1.09001 * 110.51581 * 266.35197 * 18 16 15 33 33 H 1.08999 * 110.70044 * 97.41353 * 19 18 16 34 34 H 1.08999 * 110.70624 * 220.64953 * 19 18 16 35 35 H 1.09002 * 109.64135 * 294.92276 * 22 20 15 36 36 H 1.09000 * 109.56696 * 174.38379 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.5928 -4.8207 -0.5889 13 6 1.1417 -5.2817 1.4375 14 6 2.4152 -5.3651 2.2947 15 7 3.3393 -6.2723 1.5907 16 6 3.9293 -7.3724 2.0690 17 8 4.0726 -7.6384 3.2436 18 6 4.3901 -8.2345 0.9115 19 6 4.5743 -7.2328 -0.2510 20 6 3.7108 -6.0406 0.1799 21 1 4.2739 -5.1123 0.0846 22 6 2.4114 -5.9728 -0.6242 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8404 -3.5487 -0.7808 27 1 0.4756 -4.5248 1.8516 28 1 0.6376 -6.2481 1.4432 29 1 2.8647 -4.3769 2.3922 30 1 2.1762 -5.7648 3.2802 31 1 5.3357 -8.7210 1.1502 32 1 3.6317 -8.9768 0.6625 33 1 5.6196 -6.9381 -0.3436 34 1 4.2078 -7.6561 -1.1862 35 1 1.9118 -6.9412 -0.5954 36 1 2.6347 -5.7036 -1.6566 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172146984.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:29 Heat of formation + Delta-G solvation = -38.233675 kcal Electronic energy + Delta-G solvation = -17469.789551 eV Core-core repulsion = 14760.221835 eV Total energy + Delta-G solvation = -2709.567716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63880 -37.59982 -35.54553 -33.41689 -32.51302 -30.57757 -29.20929 -26.81944 -25.44700 -23.34500 -21.89554 -21.43115 -20.13879 -18.49640 -16.62318 -16.17938 -15.80082 -15.50593 -14.94083 -14.77773 -14.10313 -13.87621 -13.55883 -13.24581 -13.02073 -12.41926 -12.30603 -12.16906 -11.93176 -11.83131 -11.28026 -11.08628 -10.89799 -10.82725 -10.65926 -10.39346 -10.34923 -9.86635 -9.56442 -9.18214 -8.56822 -8.35577 -7.36209 -6.07808 -4.09790 2.70799 3.26042 3.27977 3.35813 3.40200 4.39039 4.39258 4.51566 4.73655 4.95704 5.06559 5.17257 5.25977 5.29064 5.37823 5.55750 5.56972 5.63495 5.75784 5.79062 5.87292 5.98908 6.14070 6.25243 6.29080 6.34580 6.55342 6.82770 7.19667 7.35580 7.47380 7.73776 8.07735 8.31951 8.36871 8.54039 8.99836 9.55707 11.03232 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038932 B = 0.005522 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.029474 B = 5069.213254 C = 5078.269232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.683 5.683 11 C 0.083 3.917 12 H 0.039 0.961 13 C -0.118 4.118 14 C 0.141 3.859 15 N -0.609 5.609 16 C 0.517 3.483 17 O -0.545 6.545 18 C -0.154 4.154 19 C -0.129 4.129 20 C 0.135 3.865 21 H 0.095 0.905 22 C -0.126 4.126 23 H 0.261 0.739 24 H 0.028 0.972 25 H -0.015 1.015 26 H 0.329 0.671 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.707 -14.010 -2.653 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.315 5.315 11 C -0.027 4.027 12 H 0.057 0.943 13 C -0.157 4.157 14 C 0.020 3.980 15 N -0.343 5.343 16 C 0.305 3.695 17 O -0.423 6.423 18 C -0.195 4.195 19 C -0.167 4.167 20 C 0.031 3.969 21 H 0.113 0.887 22 C -0.165 4.165 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.003 0.997 26 H 0.146 0.854 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.648 -13.958 -1.275 15.111 hybrid contribution -0.134 1.035 -1.007 1.450 sum 5.513 -12.923 -2.282 14.234 Atomic orbital electron populations 1.69967 1.06089 1.26707 1.50935 1.24983 0.94851 0.99377 0.95327 0.86450 0.80057 0.83424 0.77518 1.19685 1.21126 1.20999 1.21206 0.93492 0.90237 1.50280 0.91976 1.19594 0.90549 0.87344 0.95711 1.60755 1.21096 1.00884 1.48747 1.21400 0.95557 0.90752 0.95021 0.94325 1.21909 0.97060 1.00716 0.96035 1.21673 0.88510 0.93816 0.94015 1.48597 1.46117 1.26307 1.13248 1.20667 0.77478 0.82015 0.89382 1.90691 1.57490 1.75647 1.18500 1.22378 1.03762 0.98491 0.94841 1.22376 1.00821 0.95084 0.98410 1.21688 0.95366 0.98901 0.80904 0.88727 1.22148 0.95874 0.99556 0.98930 0.92958 0.95367 0.99692 0.85440 0.90398 0.92668 0.89313 0.90808 0.88711 0.88224 0.89992 0.89477 0.91447 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.51 -13.98 9.32 -34.44 -0.32 -14.30 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.19 4.80 5.23 -4.97 -0.03 4.77 16 10 N -0.68 -13.08 4.95 -107.95 -0.53 -13.62 16 11 C 0.08 1.32 2.77 -67.68 -0.19 1.14 16 12 H 0.04 0.66 7.78 -51.93 -0.40 0.26 16 13 C -0.12 -1.83 5.65 -26.44 -0.15 -1.98 16 14 C 0.14 2.22 6.66 -3.17 -0.02 2.20 16 15 N -0.61 -8.86 2.94 -163.80 -0.48 -9.34 16 16 C 0.52 7.77 8.01 -11.08 -0.09 7.69 16 17 O -0.54 -10.36 17.86 5.56 0.10 -10.26 16 18 C -0.15 -1.57 6.92 -26.67 -0.18 -1.75 16 19 C -0.13 -1.15 6.71 -25.71 -0.17 -1.32 16 20 C 0.14 1.63 3.26 -67.09 -0.22 1.42 16 21 H 0.09 1.25 7.55 -51.93 -0.39 0.86 16 22 C -0.13 -1.53 4.72 -26.63 -0.13 -1.65 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.03 0.76 7.39 -51.93 -0.38 0.37 16 25 H -0.01 -0.39 8.05 -51.93 -0.42 -0.81 16 26 H 0.33 5.99 8.05 -39.29 -0.32 5.68 16 27 H 0.08 1.33 7.42 -51.93 -0.39 0.94 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.57 7.84 -51.93 -0.41 1.16 16 30 H 0.07 1.16 8.03 -51.93 -0.42 0.74 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.61 7.81 -51.93 -0.41 0.20 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 289.50 15.07 4.36 4.36 Total: -1.00 -31.27 289.50 -8.04 -39.31 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.61 Total: 1.14 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.59 Total: -2.34 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.28 Total: -48.50 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.10 Total: -10.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.27 -8.04 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172146984.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.080 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds